RNA–Protein interactions for RNA: ENST00000557341.5

SNX6-210, Transcript of sorting nexin 6, humanhuman

TSL 5

Gene SNX6, Length 559 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX6-210ENST00000557341 RSPH6AQ9H0K4 717 aa18.99■□□□□ 0.63
SNX6-210ENST00000557341 CEMIPQ8WUJ3 1361 aa18.98■□□□□ 0.63
SNX6-210ENST00000557341 ZPR1O75312 459 aa18.98■□□□□ 0.63
SNX6-210ENST00000557341 ZBTB1Q9Y2K1 713 aa18.98■□□□□ 0.63
SNX6-210ENST00000557341 C1QTNF8P60827 252 aa18.97■□□□□ 0.63
SNX6-210ENST00000557341 IL17REQ8NFR9 667 aa18.97■□□□□ 0.63
SNX6-210ENST00000557341 SBF1O95248 1867 aa18.97■□□□□ 0.63
SNX6-210ENST00000557341 HEG1Q9ULI3 1381 aa18.96■□□□□ 0.63
SNX6-210ENST00000557341 A0A0G2JLW4 131 aa18.96■□□□□ 0.63
SNX6-210ENST00000557341 DDR1Q08345 913 aa18.96■□□□□ 0.63
SNX6-210ENST00000557341 USPL1Q5W0Q7 1092 aa18.96■□□□□ 0.63
SNX6-210ENST00000557341 BCS1LQ9Y276 419 aa18.96■□□□□ 0.63
SNX6-210ENST00000557341 ANKRD31Q8N7Z5 1873 aa18.96■□□□□ 0.63
SNX6-210ENST00000557341 CACNA1SQ13698 1873 aa18.95■□□□□ 0.62
SNX6-210ENST00000557341 STARD3NLO95772 234 aa18.95■□□□□ 0.62
SNX6-210ENST00000557341 U2AF1L5P0DN76 240 aaPredicted RBP18.95■□□□□ 0.62
SNX6-210ENST00000557341 U2AF1Q01081 240 aaKnown RBP eCLIP18.95■□□□□ 0.62
SNX6-210ENST00000557341 ZNF790Q6PG37 636 aa18.95■□□□□ 0.62
SNX6-210ENST00000557341 PHACTR3Q96KR7 559 aa18.95■□□□□ 0.62
SNX6-210ENST00000557341 KDM3BQ7LBC6 1761 aa18.95■□□□□ 0.62
SNX6-210ENST00000557341 DPEP1P16444 411 aa18.94■□□□□ 0.62
SNX6-210ENST00000557341 ZNF496Q96IT1 587 aaPredicted RBP18.94■□□□□ 0.62
SNX6-210ENST00000557341 NARFQ9UHQ1 456 aa18.94■□□□□ 0.62
SNX6-210ENST00000557341 POLRMTO00411 1230 aaKnown RBP18.93■□□□□ 0.62
SNX6-210ENST00000557341 CCDC88AQ3V6T2 1871 aa18.92■□□□□ 0.62
SNX6-210ENST00000557341 COL11A2P13942 1736 aaPredicted RBP18.92■□□□□ 0.62
SNX6-210ENST00000557341 CANXP27824 592 aaKnown RBP18.92■□□□□ 0.62
SNX6-210ENST00000557341 TM4SF1P30408 202 aa18.92■□□□□ 0.62
SNX6-210ENST00000557341 FMNL2Q96PY5 1086 aa18.92■□□□□ 0.62
SNX6-210ENST00000557341 TEX13AQ9BXU3 409 aaPredicted RBP18.92■□□□□ 0.62
SNX6-210ENST00000557341 GPBP1L1Q9HC44 474 aaPredicted RBP18.92■□□□□ 0.62
SNX6-210ENST00000557341 SENP3-EIF4A1A0A087X0R7 540 aa18.91■□□□□ 0.62
SNX6-210ENST00000557341 FCHSD2O94868 740 aa18.91■□□□□ 0.62
SNX6-210ENST00000557341 ZNF526Q8TF50 670 aaPredicted RBP18.9■□□□□ 0.62
SNX6-210ENST00000557341 RTF1Q92541 710 aaKnown RBP18.9■□□□□ 0.62
SNX6-210ENST00000557341 ARFGEF2Q9Y6D5 1785 aa18.9■□□□□ 0.62
SNX6-210ENST00000557341 TIAM2Q8IVF5 1701 aa18.89■□□□□ 0.61
SNX6-210ENST00000557341 A0A087WZG4 1122 aa18.89■□□□□ 0.61
SNX6-210ENST00000557341 BTBD11A6QL63 1104 aa18.89■□□□□ 0.61
SNX6-210ENST00000557341 KCNA3P22001 575 aa18.89■□□□□ 0.61
SNX6-210ENST00000557341 EIF5P55010 431 aaKnown RBP18.89■□□□□ 0.61
SNX6-210ENST00000557341 NFIXQ14938 502 aa18.89■□□□□ 0.61
SNX6-210ENST00000557341 PIM2Q9P1W9 311 aa18.89■□□□□ 0.61
SNX6-210ENST00000557341 BCL2L12Q9HB09 334 aa18.88■□□□□ 0.61
SNX6-210ENST00000557341 CEP350Q5VT06 3117 aa18.88■□□□□ 0.61
SNX6-210ENST00000557341 TNRC6CQ9HCJ0 1690 aaKnown RBP18.88■□□□□ 0.61
SNX6-210ENST00000557341 ARHGAP27Q6ZUM4 889 aa18.87■□□□□ 0.61
SNX6-210ENST00000557341 CHRNA5P30532 468 aa18.86■□□□□ 0.61
SNX6-210ENST00000557341 IL6STP40189 918 aaPredicted RBP18.86■□□□□ 0.61
SNX6-210ENST00000557341 DALRD3Q5D0E6 543 aaKnown RBP18.86■□□□□ 0.61
SNX6-210ENST00000557341 MCM10Q7L590 875 aa18.86■□□□□ 0.61
SNX6-210ENST00000557341 ZNF330Q9Y3S2 320 aaPredicted RBP18.86■□□□□ 0.61
SNX6-210ENST00000557341 CARMIL3Q8ND23 1372 aa18.85■□□□□ 0.61
SNX6-210ENST00000557341 HTATSF1O43719 755 aaKnown RBP18.85■□□□□ 0.61
SNX6-210ENST00000557341 SERPINB2P05120 415 aa18.85■□□□□ 0.61
SNX6-210ENST00000557341 NEFMP07197 916 aa18.85■□□□□ 0.61
SNX6-210ENST00000557341 NPM2Q86SE8 214 aaKnown RBP18.85■□□□□ 0.61
SNX6-210ENST00000557341 DICER1Q9UPY3 1922 aaKnown RBP18.84■□□□□ 0.61
SNX6-210ENST00000557341 KCNQ3O43525 872 aa18.84■□□□□ 0.61
SNX6-210ENST00000557341 FER1L6Q2WGJ9 1857 aa18.83■□□□□ 0.6
SNX6-210ENST00000557341 NUP98P52948 1817 aa18.83■□□□□ 0.6
SNX6-210ENST00000557341 A1BGP04217 495 aa18.82■□□□□ 0.6
SNX6-210ENST00000557341 DCTN1Q14203 1278 aa18.82■□□□□ 0.6
SNX6-210ENST00000557341 BICDL1Q6ZP65 573 aa18.82■□□□□ 0.6
SNX6-210ENST00000557341 TBC1D2BQ9UPU7 963 aa18.82■□□□□ 0.6
SNX6-210ENST00000557341 TBC1D9BQ66K14 1250 aa18.81■□□□□ 0.6
SNX6-210ENST00000557341 SNRPA1P09661 255 aaKnown RBP18.8■□□□□ 0.6
SNX6-210ENST00000557341 C9orf131Q5VYM1 1079 aa18.79■□□□□ 0.6
SNX6-210ENST00000557341 DZIP3Q86Y13 1208 aaKnown RBP18.79■□□□□ 0.6
SNX6-210ENST00000557341 USP16Q9Y5T5 823 aa18.79■□□□□ 0.6
SNX6-210ENST00000557341 MAPK8IP3Q9UPT6 1336 aa18.78■□□□□ 0.6
SNX6-210ENST00000557341 PRAMEF22A3QJZ6 481 aa18.78■□□□□ 0.6
SNX6-210ENST00000557341 KIF3CO14782 793 aa18.78■□□□□ 0.6
SNX6-210ENST00000557341 CAMTA2O94983 1202 aa18.78■□□□□ 0.6
SNX6-210ENST00000557341 C2CD5Q86YS7 1000 aa18.78■□□□□ 0.6
SNX6-210ENST00000557341 PLEKHF1Q96S99 279 aa18.78■□□□□ 0.6
SNX6-210ENST00000557341 SLX4Q8IY92 1834 aa18.77■□□□□ 0.6
SNX6-210ENST00000557341 H0YIN7 160 aa18.77■□□□□ 0.6
SNX6-210ENST00000557341 PIP4K2AP48426 406 aaPredicted RBP18.77■□□□□ 0.6
SNX6-210ENST00000557341 TAF7Q15545 349 aaPredicted RBP18.77■□□□□ 0.6
SNX6-210ENST00000557341 PNNQ9H307 717 aaKnown RBP18.77■□□□□ 0.6
SNX6-210ENST00000557341 RNF181Q9P0P0 153 aa18.77■□□□□ 0.6
SNX6-210ENST00000557341 NFE2L2Q16236 605 aa18.76■□□□□ 0.59
SNX6-210ENST00000557341 PRR5LQ6MZQ0 368 aa18.76■□□□□ 0.59
SNX6-210ENST00000557341 TTLL6Q8N841 843 aa18.76■□□□□ 0.59
SNX6-210ENST00000557341 SETDB2Q96T68 719 aa18.76■□□□□ 0.59
SNX6-210ENST00000557341 PDZRN3Q9UPQ7 1066 aa18.76■□□□□ 0.59
SNX6-210ENST00000557341 NPHP1O15259 732 aa18.75■□□□□ 0.59
SNX6-210ENST00000557341 PDE6BP35913 854 aa18.75■□□□□ 0.59
SNX6-210ENST00000557341 RALBP1Q15311 655 aa18.75■□□□□ 0.59
SNX6-210ENST00000557341 CNBD1Q8NA66 436 aa18.75■□□□□ 0.59
SNX6-210ENST00000557341 PNISRQ8TF01 805 aaKnown RBP18.75■□□□□ 0.59
SNX6-210ENST00000557341 BRIP1Q9BX63 1249 aa18.75■□□□□ 0.59
SNX6-210ENST00000557341 ZNF652Q9Y2D9 606 aa18.75■□□□□ 0.59
SNX6-210ENST00000557341 ANKRD36CQ5JPF3 1778 aa18.74■□□□□ 0.59
SNX6-210ENST00000557341 WDR90Q96KV7 1748 aa18.74■□□□□ 0.59
SNX6-210ENST00000557341 ST5P78524 1137 aa18.73■□□□□ 0.59
SNX6-210ENST00000557341 RASSF7Q02833 373 aa18.73■□□□□ 0.59
SNX6-210ENST00000557341 CLEC4GQ6UXB4 293 aa18.73■□□□□ 0.59
SNX6-210ENST00000557341 KDM2BQ8NHM5 1336 aa18.73■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms