RNA–Protein interactions for RNA: ENST00000557222.5

VRK1-206, Transcript of vaccinia related kinase 1, humanhuman

TSL 5

Gene VRK1, Length 1,029 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-206ENST00000557222 ARHGAP33O14559 1287 aa12.16□□□□□ -0.46
VRK1-206ENST00000557222 HOXC9P31274 260 aa12.16□□□□□ -0.46
VRK1-206ENST00000557222 LRRC4BQ9NT99 713 aa12.16□□□□□ -0.46
VRK1-206ENST00000557222 MAP3K19Q56UN5 1328 aa12.15□□□□□ -0.46
VRK1-206ENST00000557222 AMPHP49418 695 aa12.15□□□□□ -0.46
VRK1-206ENST00000557222 ZNF827Q17R98 1081 aa12.15□□□□□ -0.46
VRK1-206ENST00000557222 ZNF454Q8N9F8 522 aa12.15□□□□□ -0.46
VRK1-206ENST00000557222 DDX54Q8TDD1 881 aaKnown RBP12.15□□□□□ -0.46
VRK1-206ENST00000557222 RTL1A6NKG5 1358 aa12.15□□□□□ -0.46
VRK1-206ENST00000557222 ANKRD36BQ8N2N9 1353 aa12.15□□□□□ -0.46
VRK1-206ENST00000557222 ZCRB1Q8TBF4 217 aaKnown RBP12.14□□□□□ -0.47
VRK1-206ENST00000557222 POLD1P28340 1107 aa12.13□□□□□ -0.47
VRK1-206ENST00000557222 FOSBP53539 338 aa12.13□□□□□ -0.47
VRK1-206ENST00000557222 ZNF784Q8NCA9 323 aaPredicted RBP12.13□□□□□ -0.47
VRK1-206ENST00000557222 LTV1Q96GA3 475 aaPredicted RBP12.13□□□□□ -0.47
VRK1-206ENST00000557222 QSER1Q2KHR3 1735 aa12.13□□□□□ -0.47
VRK1-206ENST00000557222 CHD4Q14839 1912 aa12.12□□□□□ -0.47
VRK1-206ENST00000557222 PRIM1P49642 420 aaKnown RBP12.12□□□□□ -0.47
VRK1-206ENST00000557222 PSEN2P49810 448 aa12.12□□□□□ -0.47
VRK1-206ENST00000557222 TMF1P82094 1093 aa12.12□□□□□ -0.47
VRK1-206ENST00000557222 CDCA8Q53HL2 280 aa12.12□□□□□ -0.47
VRK1-206ENST00000557222 KIF24Q5T7B8 1368 aa12.12□□□□□ -0.47
VRK1-206ENST00000557222 PNPLA7Q6ZV29 1317 aa12.11□□□□□ -0.47
VRK1-206ENST00000557222 DPYSL4O14531 572 aa12.11□□□□□ -0.47
VRK1-206ENST00000557222 FYB1O15117 783 aa12.11□□□□□ -0.47
VRK1-206ENST00000557222 TFCP2L1Q9NZI6 479 aa12.11□□□□□ -0.47
VRK1-206ENST00000557222 COL24A1Q17RW2 1714 aa12.11□□□□□ -0.47
VRK1-206ENST00000557222 NSD2O96028 1365 aa12.1□□□□□ -0.47
VRK1-206ENST00000557222 SYTL4Q96C24 671 aaPredicted RBP12.1□□□□□ -0.47
VRK1-206ENST00000557222 GOLGB1Q14789 3259 aaKnown RBP12.1□□□□□ -0.47
VRK1-206ENST00000557222 SMG6Q86US8 1419 aaKnown RBP12.1□□□□□ -0.47
VRK1-206ENST00000557222 NBPF6Q5VWK0 638 aa12.09□□□□□ -0.47
VRK1-206ENST00000557222 DMRTA1Q5VZB9 504 aa12.09□□□□□ -0.47
VRK1-206ENST00000557222 RAPGEF4Q8WZA2 1011 aa12.09□□□□□ -0.47
VRK1-206ENST00000557222 NBPF4Q96M43 638 aa12.09□□□□□ -0.47
VRK1-206ENST00000557222 TSHZ2Q9NRE2 1034 aa12.09□□□□□ -0.47
VRK1-206ENST00000557222 WDR70Q9NW82 654 aa12.09□□□□□ -0.47
VRK1-206ENST00000557222 INSRP06213 1382 aa12.08□□□□□ -0.48
VRK1-206ENST00000557222 USP47Q96K76 1375 aa12.08□□□□□ -0.48
VRK1-206ENST00000557222 MEGF6O75095 1541 aa12.08□□□□□ -0.48
VRK1-206ENST00000557222 TATP17735 454 aaPredicted RBP12.08□□□□□ -0.48
VRK1-206ENST00000557222 FBLN1P23142 703 aa12.08□□□□□ -0.48
VRK1-206ENST00000557222 GPR162Q16538 588 aa12.08□□□□□ -0.48
VRK1-206ENST00000557222 FLAD1Q8NFF5 587 aa12.08□□□□□ -0.48
VRK1-206ENST00000557222 KCNK17Q96T54 332 aa12.08□□□□□ -0.48
VRK1-206ENST00000557222 CCNL1Q9UK58 526 aaPredicted RBP12.08□□□□□ -0.48
VRK1-206ENST00000557222 LY75O60449 1722 aa12.08□□□□□ -0.48
VRK1-206ENST00000557222 RRS1Q15050 365 aaKnown RBP12.07□□□□□ -0.48
VRK1-206ENST00000557222 E2F4Q16254 413 aa12.07□□□□□ -0.48
VRK1-206ENST00000557222 GGNBP2Q9H3C7 697 aa12.07□□□□□ -0.48
VRK1-206ENST00000557222 BCL2L12Q9HB09 334 aa12.07□□□□□ -0.48
VRK1-206ENST00000557222 PCDH11XQ9BZA7 1347 aa12.07□□□□□ -0.48
VRK1-206ENST00000557222 PCDH11YQ9BZA8 1340 aa12.07□□□□□ -0.48
VRK1-206ENST00000557222 FLT4P35916 1363 aa12.06□□□□□ -0.48
VRK1-206ENST00000557222 ZDHHC16Q969W1 377 aa12.06□□□□□ -0.48
VRK1-206ENST00000557222 DOT1LQ8TEK3 1739 aa12.06□□□□□ -0.48
VRK1-206ENST00000557222 SHANK3Q9BYB0 1731 aa12.06□□□□□ -0.48
VRK1-206ENST00000557222 GRIN3BO60391 1043 aa12.05□□□□□ -0.48
VRK1-206ENST00000557222 ADGRD1Q6QNK2 874 aa12.05□□□□□ -0.48
VRK1-206ENST00000557222 RNF166Q96A37 237 aaPredicted RBP12.05□□□□□ -0.48
VRK1-206ENST00000557222 TIMELESSQ9UNS1 1208 aa12.05□□□□□ -0.48
VRK1-206ENST00000557222 PCDHGA10Q9Y5H3 936 aa12.05□□□□□ -0.48
VRK1-206ENST00000557222 RGPD2P0DJD1 1756 aa12.05□□□□□ -0.48
VRK1-206ENST00000557222 KCNQ4P56696 695 aa12.04□□□□□ -0.48
VRK1-206ENST00000557222 C1QTNF8P60827 252 aa12.04□□□□□ -0.48
VRK1-206ENST00000557222 HSP90AB2PQ58FF8 381 aa12.04□□□□□ -0.48
VRK1-206ENST00000557222 COL23A1Q86Y22 540 aaPredicted RBP12.04□□□□□ -0.48
VRK1-206ENST00000557222 SMARCC1Q92922 1105 aaPredicted RBP12.04□□□□□ -0.48
VRK1-206ENST00000557222 ADAM33Q9BZ11 813 aa12.04□□□□□ -0.48
VRK1-206ENST00000557222 TK2O00142 265 aa12.03□□□□□ -0.48
VRK1-206ENST00000557222 CD2APQ9Y5K6 639 aa12.03□□□□□ -0.48
VRK1-206ENST00000557222 TUBGCP6Q96RT7 1819 aa12.02□□□□□ -0.48
VRK1-206ENST00000557222 CYP27B1O15528 508 aa12.02□□□□□ -0.49
VRK1-206ENST00000557222 USHBP1Q8N6Y0 703 aa12.02□□□□□ -0.49
VRK1-206ENST00000557222 NCAPD2Q15021 1401 aa12.02□□□□□ -0.49
VRK1-206ENST00000557222 PHF14O94880 888 aa12.01□□□□□ -0.49
VRK1-206ENST00000557222 PTPREP23469 700 aa12.01□□□□□ -0.49
VRK1-206ENST00000557222 NLGN2Q8NFZ4 835 aa12.01□□□□□ -0.49
VRK1-206ENST00000557222 CARD14Q9BXL6 1004 aa12.01□□□□□ -0.49
VRK1-206ENST00000557222 SPG7Q9UQ90 795 aa12.01□□□□□ -0.49
VRK1-206ENST00000557222 WASHC2AQ641Q2 1341 aa12.01□□□□□ -0.49
VRK1-206ENST00000557222 PALLDQ8WX93 1383 aa12.01□□□□□ -0.49
VRK1-206ENST00000557222 PLEKHG2Q9H7P9 1386 aa12.01□□□□□ -0.49
VRK1-206ENST00000557222 NSD3Q9BZ95 1437 aa12.01□□□□□ -0.49
VRK1-206ENST00000557222 TRIM26Q12899 539 aaPredicted RBP12□□□□□ -0.49
VRK1-206ENST00000557222 MPRIPQ6WCQ1 1025 aa12□□□□□ -0.49
VRK1-206ENST00000557222 KIF20BQ96Q89 1820 aa12□□□□□ -0.49
VRK1-206ENST00000557222 GIGYF1O75420 1035 aaPredicted RBP11.99□□□□□ -0.49
VRK1-206ENST00000557222 PDIA6Q15084 440 aa11.99□□□□□ -0.49
VRK1-206ENST00000557222 ARIH1Q9Y4X5 557 aaPredicted RBP11.99□□□□□ -0.49
VRK1-206ENST00000557222 CEP350Q5VT06 3117 aa11.98□□□□□ -0.49
VRK1-206ENST00000557222 HRO43593 1189 aa11.98□□□□□ -0.49
VRK1-206ENST00000557222 YBX3P16989 372 aaKnown RBP eCLIP11.98□□□□□ -0.496e-6■□□□□ 10.6
VRK1-206ENST00000557222 TYW1BQ6NUM6 668 aa11.98□□□□□ -0.49
VRK1-206ENST00000557222 PIGBQ92521 554 aa11.98□□□□□ -0.49
VRK1-206ENST00000557222 AK7Q96M32 723 aa11.98□□□□□ -0.49
VRK1-206ENST00000557222 EMILIN1Q9Y6C2 1016 aa11.98□□□□□ -0.49
VRK1-206ENST00000557222 PKD1L3Q7Z443 1732 aa11.97□□□□□ -0.49
VRK1-206ENST00000557222 C5P01031 1676 aa11.97□□□□□ -0.49
VRK1-206ENST00000557222 CLSPNQ9HAW4 1339 aa11.97□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms