RNA–Protein interactions for RNA: ENST00000556413.1

SCFD1-219, Transcript of sec1 family domain containing 1, humanhuman

TSL 3

Gene SCFD1, Length 512 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-219ENST00000556413 SKIP12755 728 aa8.73□□□□□ -1.01
SCFD1-219ENST00000556413 EML3Q32P44 896 aa8.73□□□□□ -1.01
SCFD1-219ENST00000556413 FIGNL1Q6PIW4 674 aa8.73□□□□□ -1.01
SCFD1-219ENST00000556413 NLRP8Q86W28 1048 aa8.73□□□□□ -1.01
SCFD1-219ENST00000556413 A0A1W2PNR3 127 aa8.72□□□□□ -1.01
SCFD1-219ENST00000556413 GGA1Q9UJY5 639 aa8.72□□□□□ -1.01
SCFD1-219ENST00000556413 HCN2Q9UL51 889 aa8.72□□□□□ -1.01
SCFD1-219ENST00000556413 LZTS3O60299 673 aaPredicted RBP8.71□□□□□ -1.02
SCFD1-219ENST00000556413 NBPF1Q3BBV0 1214 aa8.71□□□□□ -1.02
SCFD1-219ENST00000556413 ARSJQ5FYB0 599 aaPredicted RBP8.71□□□□□ -1.02
SCFD1-219ENST00000556413 SLCO4C1Q6ZQN7 724 aa8.71□□□□□ -1.02
SCFD1-219ENST00000556413 NFATC2IPQ8NCF5 419 aa8.71□□□□□ -1.02
SCFD1-219ENST00000556413 CABP1Q9NZU7 370 aa8.71□□□□□ -1.02
SCFD1-219ENST00000556413 NOD1Q9Y239 953 aa8.71□□□□□ -1.02
SCFD1-219ENST00000556413 ATXN7O15265 892 aaPredicted RBP8.7□□□□□ -1.02
SCFD1-219ENST00000556413 GTF2IP78347 998 aa8.7□□□□□ -1.02
SCFD1-219ENST00000556413 NCOA4Q13772 614 aa8.7□□□□□ -1.02
SCFD1-219ENST00000556413 RRAGCQ9HB90 399 aa8.7□□□□□ -1.02
SCFD1-219ENST00000556413 ZDHHC3Q9NYG2 299 aa8.7□□□□□ -1.02
SCFD1-219ENST00000556413 MKL2Q9ULH7 1088 aa8.7□□□□□ -1.02
SCFD1-219ENST00000556413 DCDC2BA2VCK2 349 aa8.69□□□□□ -1.02
SCFD1-219ENST00000556413 MSTNO14793 375 aa8.69□□□□□ -1.02
SCFD1-219ENST00000556413 BACH1O14867 736 aa8.69□□□□□ -1.02
SCFD1-219ENST00000556413 ARAFP10398 606 aa8.69□□□□□ -1.02
SCFD1-219ENST00000556413 MAPTP10636 758 aaKnown RBP8.69□□□□□ -1.02
SCFD1-219ENST00000556413 HOXB4P17483 251 aaPredicted RBP8.69□□□□□ -1.02
SCFD1-219ENST00000556413 TATP17735 454 aaPredicted RBP8.69□□□□□ -1.02
SCFD1-219ENST00000556413 TNP2Q05952 138 aa8.69□□□□□ -1.02
SCFD1-219ENST00000556413 WWC1Q8IX03 1113 aa8.69□□□□□ -1.02
SCFD1-219ENST00000556413 ZIC5Q96T25 663 aa8.69□□□□□ -1.02
SCFD1-219ENST00000556413 SPOCK3Q9BQ16 436 aa8.69□□□□□ -1.02
SCFD1-219ENST00000556413 PARP3Q9Y6F1 533 aa8.69□□□□□ -1.02
SCFD1-219ENST00000556413 AMPD1P23109 780 aa8.68□□□□□ -1.02
SCFD1-219ENST00000556413 SERBP1Q8NC51 408 aaKnown RBP eCLIP8.68□□□□□ -1.02
SCFD1-219ENST00000556413 ZNF358Q9NW07 568 aa8.68□□□□□ -1.02
SCFD1-219ENST00000556413 NEURL1BA8MQ27 555 aa8.67□□□□□ -1.02
SCFD1-219ENST00000556413 USP17L5A8MUK1 530 aa8.67□□□□□ -1.02
SCFD1-219ENST00000556413 EPXP11678 715 aa8.67□□□□□ -1.02
SCFD1-219ENST00000556413 CD33P20138 364 aa8.67□□□□□ -1.02
SCFD1-219ENST00000556413 COL8A1P27658 744 aa8.67□□□□□ -1.02
SCFD1-219ENST00000556413 PSME1Q06323 249 aa8.67□□□□□ -1.02
SCFD1-219ENST00000556413 LINC00114Q6XXX2 140 aa8.67□□□□□ -1.02
SCFD1-219ENST00000556413 DEPDC4Q8N2C3 294 aa8.67□□□□□ -1.02
SCFD1-219ENST00000556413 BTBD6Q96KE9 485 aa8.67□□□□□ -1.02
SCFD1-219ENST00000556413 SCHIP1Q9P0W5 487 aaPredicted RBP8.67□□□□□ -1.02
SCFD1-219ENST00000556413 KRBA1A5PL33 1030 aa8.66□□□□□ -1.02
SCFD1-219ENST00000556413 POM121CA8CG34 1229 aa8.66□□□□□ -1.02
SCFD1-219ENST00000556413 KHNYNO15037 678 aaKnown RBP8.66□□□□□ -1.02
SCFD1-219ENST00000556413 RAD21O60216 631 aa8.66□□□□□ -1.02
SCFD1-219ENST00000556413 PROCP04070 461 aa8.66□□□□□ -1.02
SCFD1-219ENST00000556413 FAM182BQ5T319 152 aa8.66□□□□□ -1.02
SCFD1-219ENST00000556413 ADAMTS19Q8TE59 1207 aa8.66□□□□□ -1.02
SCFD1-219ENST00000556413 ZDHHC1Q8WTX9 485 aa8.66□□□□□ -1.02
SCFD1-219ENST00000556413 KLF15Q9UIH9 416 aa8.66□□□□□ -1.02
SCFD1-219ENST00000556413 TXLNAP40222 546 aa8.65□□□□□ -1.02
SCFD1-219ENST00000556413 EPHA4P54764 986 aa8.65□□□□□ -1.02
SCFD1-219ENST00000556413 FAM157BP0CG42 384 aa8.64□□□□□ -1.03
SCFD1-219ENST00000556413 TEAD4Q15561 434 aa8.64□□□□□ -1.03
SCFD1-219ENST00000556413 L3MBTL2Q969R5 705 aa8.64□□□□□ -1.03
SCFD1-219ENST00000556413 SUV39H2Q9H5I1 410 aa8.64□□□□□ -1.03
SCFD1-219ENST00000556413 GJA3Q9Y6H8 435 aa8.64□□□□□ -1.03
SCFD1-219ENST00000556413 ADH6P28332 368 aa8.63□□□□□ -1.03
SCFD1-219ENST00000556413 FLIIQ13045 1269 aa8.63□□□□□ -1.03
SCFD1-219ENST00000556413 SAMD5Q5TGI4 173 aa8.63□□□□□ -1.03
SCFD1-219ENST00000556413 BICDL1Q6ZP65 573 aa8.63□□□□□ -1.03
SCFD1-219ENST00000556413 ALYREFQ86V81 257 aaKnown RBP8.63□□□□□ -1.03
SCFD1-219ENST00000556413 SLC9A9Q8IVB4 645 aa8.63□□□□□ -1.03
SCFD1-219ENST00000556413 TNS4Q8IZW8 715 aa8.63□□□□□ -1.03
SCFD1-219ENST00000556413 AVENQ9NQS1 362 aaPredicted RBP8.63□□□□□ -1.03
SCFD1-219ENST00000556413 UBTFP17480 764 aaKnown RBP8.62□□□□□ -1.03
SCFD1-219ENST00000556413 NOS2P35228 1153 aa8.62□□□□□ -1.03
SCFD1-219ENST00000556413 DGKGP49619 791 aa8.62□□□□□ -1.03
SCFD1-219ENST00000556413 TBCELQ5QJ74 424 aa8.62□□□□□ -1.03
SCFD1-219ENST00000556413 FCHSD1Q86WN1 690 aa8.62□□□□□ -1.03
SCFD1-219ENST00000556413 STRN4Q9NRL3 753 aa8.62□□□□□ -1.03
SCFD1-219ENST00000556413 KIAA1024Q9UPX6 916 aa8.62□□□□□ -1.03
SCFD1-219ENST00000556413 EML1O00423 815 aa8.61□□□□□ -1.03
SCFD1-219ENST00000556413 GNB5O14775 395 aa8.61□□□□□ -1.03
SCFD1-219ENST00000556413 ZBTB7BO15156 539 aaPredicted RBP8.61□□□□□ -1.03
SCFD1-219ENST00000556413 EFSO43281 561 aa8.61□□□□□ -1.03
SCFD1-219ENST00000556413 GRIN2CQ14957 1233 aa8.61□□□□□ -1.03
SCFD1-219ENST00000556413 HDGFL1Q5TGJ6 251 aa8.61□□□□□ -1.03
SCFD1-219ENST00000556413 CHSY3Q70JA7 882 aa8.61□□□□□ -1.03
SCFD1-219ENST00000556413 TRIM50Q86XT4 487 aa8.61□□□□□ -1.03
SCFD1-219ENST00000556413 PLEKHM2Q8IWE5 1019 aa8.61□□□□□ -1.03
SCFD1-219ENST00000556413 C7orf43Q8WVR3 580 aa8.61□□□□□ -1.03
SCFD1-219ENST00000556413 UCN2Q96RP3 112 aa8.61□□□□□ -1.03
SCFD1-219ENST00000556413 MARK1Q9P0L2 795 aa8.61□□□□□ -1.03
SCFD1-219ENST00000556413 USP17L3A6NCW0 530 aa8.6□□□□□ -1.03
SCFD1-219ENST00000556413 USP17L4A6NCW7 530 aa8.6□□□□□ -1.03
SCFD1-219ENST00000556413 PCBP4P57723 403 aaKnown RBP8.6□□□□□ -1.03
SCFD1-219ENST00000556413 CLDN10P78369 228 aa8.6□□□□□ -1.03
SCFD1-219ENST00000556413 ZNF468Q5VIY5 522 aaPredicted RBP8.6□□□□□ -1.03
SCFD1-219ENST00000556413 USP17L2Q6R6M4 530 aa8.6□□□□□ -1.03
SCFD1-219ENST00000556413 USP17L1Q7RTZ2 530 aa8.6□□□□□ -1.03
SCFD1-219ENST00000556413 TPCN2Q8NHX9 752 aa8.6□□□□□ -1.03
SCFD1-219ENST00000556413 PRR12Q9ULL5 1215 aa8.6□□□□□ -1.03
SCFD1-219ENST00000556413 PIK3R2O00459 728 aa8.59□□□□□ -1.03
SCFD1-219ENST00000556413 ADAM23O75077 832 aa8.59□□□□□ -1.03
SCFD1-219ENST00000556413 LAMC2Q13753 1193 aa8.59□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 59.2 ms