RNA–Protein interactions for RNA: ENST00000555213.1

SHMT2-218, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 611 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-218ENST00000555213 AKT1S1Q96B36 256 aa14.12□□□□□ -0.15
SHMT2-218ENST00000555213 CCDC87Q9NVE4 849 aa14.12□□□□□ -0.15
SHMT2-218ENST00000555213 TAF1LQ8IZX4 1826 aa14.12□□□□□ -0.15
SHMT2-218ENST00000555213 CRKLP46109 303 aaKnown RBP14.11□□□□□ -0.15
SHMT2-218ENST00000555213 R3HDM1Q15032 1099 aaKnown RBP14.11□□□□□ -0.15
SHMT2-218ENST00000555213 RC3H1Q5TC82 1133 aaKnown RBP14.11□□□□□ -0.15
SHMT2-218ENST00000555213 NPM2Q86SE8 214 aaKnown RBP14.11□□□□□ -0.15
SHMT2-218ENST00000555213 FLAD1Q8NFF5 587 aa14.11□□□□□ -0.15
SHMT2-218ENST00000555213 LAMB4A4D0S4 1761 aa14.1□□□□□ -0.15
SHMT2-218ENST00000555213 GIGYF1O75420 1035 aaPredicted RBP14.1□□□□□ -0.15
SHMT2-218ENST00000555213 HOXB7P09629 217 aa14.1□□□□□ -0.15
SHMT2-218ENST00000555213 CYP19A1P11511 503 aaPredicted RBP14.1□□□□□ -0.15
SHMT2-218ENST00000555213 SSFA2P28290 1259 aa14.1□□□□□ -0.15
SHMT2-218ENST00000555213 CHMP4AQ9BY43 222 aa14.1□□□□□ -0.15
SHMT2-218ENST00000555213 RTCBQ9Y3I0 505 aaKnown RBP14.1□□□□□ -0.15
SHMT2-218ENST00000555213 FANCIQ9NVI1 1328 aa14.1□□□□□ -0.15
SHMT2-218ENST00000555213 PSDA5PKW4 1024 aaPredicted RBP14.09□□□□□ -0.15
SHMT2-218ENST00000555213 E9PSI1 815 aa14.09□□□□□ -0.15
SHMT2-218ENST00000555213 ADRA2BP18089 450 aa14.09□□□□□ -0.15
SHMT2-218ENST00000555213 TSR2Q969E8 191 aaKnown RBP14.09□□□□□ -0.15
SHMT2-218ENST00000555213 SOS1Q07889 1333 aaPredicted RBP14.09□□□□□ -0.15
SHMT2-218ENST00000555213 MSH5O43196 834 aa14.08□□□□□ -0.16
SHMT2-218ENST00000555213 PHF14O94880 888 aa14.08□□□□□ -0.16
SHMT2-218ENST00000555213 SUPT16HQ9Y5B9 1047 aaKnown RBP14.08□□□□□ -0.16
SHMT2-218ENST00000555213 ERBB4Q15303 1308 aa14.08□□□□□ -0.16
SHMT2-218ENST00000555213 QSER1Q2KHR3 1735 aa14.07□□□□□ -0.16
SHMT2-218ENST00000555213 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP14.07□□□□□ -0.16
SHMT2-218ENST00000555213 RPS6KA4O75676 772 aa14.07□□□□□ -0.16
SHMT2-218ENST00000555213 ZBTB1Q9Y2K1 713 aa14.07□□□□□ -0.16
SHMT2-218ENST00000555213 RNF123Q5XPI4 1314 aa14.07□□□□□ -0.16
SHMT2-218ENST00000555213 PNPLA7Q6ZV29 1317 aa14.07□□□□□ -0.16
SHMT2-218ENST00000555213 PRAMEF22A3QJZ6 481 aa14.06□□□□□ -0.16
SHMT2-218ENST00000555213 CANXP27824 592 aaKnown RBP14.06□□□□□ -0.16
SHMT2-218ENST00000555213 TRAPPC3LQ5T215 181 aa14.06□□□□□ -0.16
SHMT2-218ENST00000555213 HDGFL1Q5TGJ6 251 aa14.06□□□□□ -0.16
SHMT2-218ENST00000555213 INTS5Q6P9B9 1019 aaKnown RBP14.06□□□□□ -0.16
SHMT2-218ENST00000555213 ZNF330Q9Y3S2 320 aaPredicted RBP14.06□□□□□ -0.16
SHMT2-218ENST00000555213 USP16Q9Y5T5 823 aa14.06□□□□□ -0.16
SHMT2-218ENST00000555213 COL15A1P39059 1388 aa14.06□□□□□ -0.16
SHMT2-218ENST00000555213 A0A087WZG4 1122 aa14.05□□□□□ -0.16
SHMT2-218ENST00000555213 EIF2S2P20042 333 aaKnown RBP14.05□□□□□ -0.16
SHMT2-218ENST00000555213 RFC4P35249 363 aa14.05□□□□□ -0.16
SHMT2-218ENST00000555213 IL6STP40189 918 aaPredicted RBP14.05□□□□□ -0.16
SHMT2-218ENST00000555213 GTF3C3Q9Y5Q9 886 aa14.05□□□□□ -0.16
SHMT2-218ENST00000555213 UBR3Q6ZT12 1888 aa14.05□□□□□ -0.16
SHMT2-218ENST00000555213 TUBGCP6Q96RT7 1819 aa14.04□□□□□ -0.16
SHMT2-218ENST00000555213 KRT24Q2M2I5 525 aa14.04□□□□□ -0.16
SHMT2-218ENST00000555213 SLC16A10Q8TF71 515 aa14.04□□□□□ -0.16
SHMT2-218ENST00000555213 A1BGP04217 495 aa14.03□□□□□ -0.16
SHMT2-218ENST00000555213 TWISTNBQ3B726 338 aaPredicted RBP14.03□□□□□ -0.16
SHMT2-218ENST00000555213 COL23A1Q86Y22 540 aaPredicted RBP14.03□□□□□ -0.16
SHMT2-218ENST00000555213 CASZ1Q86V15 1759 aa14.03□□□□□ -0.16
SHMT2-218ENST00000555213 ELL2O00472 640 aaPredicted RBP14.02□□□□□ -0.17
SHMT2-218ENST00000555213 ZPR1O75312 459 aa14.02□□□□□ -0.17
SHMT2-218ENST00000555213 EIF5P55010 431 aaKnown RBP14.02□□□□□ -0.17
SHMT2-218ENST00000555213 CCDC30Q5VVM6 783 aa14.02□□□□□ -0.17
SHMT2-218ENST00000555213 C8orf58Q8NAV2 365 aa14.02□□□□□ -0.17
SHMT2-218ENST00000555213 MTFR1LQ9H019 292 aa14.02□□□□□ -0.17
SHMT2-218ENST00000555213 MYH14Q7Z406 1995 aaKnown RBP14.02□□□□□ -0.17
SHMT2-218ENST00000555213 USP42Q9H9J4 1324 aaKnown RBP14.01□□□□□ -0.17
SHMT2-218ENST00000555213 EXOSC9Q06265 439 aaKnown RBP14.01□□□□□ -0.17
SHMT2-218ENST00000555213 AMIGO3Q86WK7 504 aa14.01□□□□□ -0.17
SHMT2-218ENST00000555213 NECTIN2Q92692 538 aa14.01□□□□□ -0.17
SHMT2-218ENST00000555213 ARHGEF1Q92888 912 aaKnown RBP14.01□□□□□ -0.17
SHMT2-218ENST00000555213 ARXQ96QS3 562 aa14.01□□□□□ -0.17
SHMT2-218ENST00000555213 STK31Q9BXU1 1019 aa14.01□□□□□ -0.17
SHMT2-218ENST00000555213 DBF4Q9UBU7 674 aaPredicted RBP14.01□□□□□ -0.17
SHMT2-218ENST00000555213 RCAN3Q9UKA8 241 aa14.01□□□□□ -0.17
SHMT2-218ENST00000555213 NBPF26B4DH59 902 aa14□□□□□ -0.17
SHMT2-218ENST00000555213 ZBTB7AO95365 584 aa14□□□□□ -0.17
SHMT2-218ENST00000555213 MYL6BP14649 208 aa14□□□□□ -0.17
SHMT2-218ENST00000555213 PIP4K2AP48426 406 aaPredicted RBP14□□□□□ -0.17
SHMT2-218ENST00000555213 NBPF10Q6P3W6 841 aaKnown RBP14□□□□□ -0.17
SHMT2-218ENST00000555213 KIF6Q6ZMV9 814 aa14□□□□□ -0.17
SHMT2-218ENST00000555213 NBPF15Q8N660 670 aa14□□□□□ -0.17
SHMT2-218ENST00000555213 DDX21Q9NR30 783 aaKnown RBP eCLIP14□□□□□ -0.17
SHMT2-218ENST00000555213 CHPF2Q9P2E5 772 aa14□□□□□ -0.17
SHMT2-218ENST00000555213 C4AP0C0L4 1744 aa14□□□□□ -0.17
SHMT2-218ENST00000555213 POLD1P28340 1107 aa13.99□□□□□ -0.17
SHMT2-218ENST00000555213 SMIM5Q71RC9 77 aa13.99□□□□□ -0.17
SHMT2-218ENST00000555213 DZIP3Q86Y13 1208 aaKnown RBP13.99□□□□□ -0.17
SHMT2-218ENST00000555213 TSPYL6Q8N831 410 aa13.99□□□□□ -0.17
SHMT2-218ENST00000555213 PDGFDQ9GZP0 370 aaPredicted RBP13.99□□□□□ -0.17
SHMT2-218ENST00000555213 SPON1Q9HCB6 807 aa13.99□□□□□ -0.17
SHMT2-218ENST00000555213 HYPKQ9NX55 129 aa13.99□□□□□ -0.17
SHMT2-218ENST00000555213 NARFQ9UHQ1 456 aa13.99□□□□□ -0.17
SHMT2-218ENST00000555213 ZNF652Q9Y2D9 606 aa13.99□□□□□ -0.17
SHMT2-218ENST00000555213 NLGN1Q8N2Q7 840 aa13.98□□□□□ -0.17
SHMT2-218ENST00000555213 SCN7AQ01118 1682 aa13.98□□□□□ -0.17
SHMT2-218ENST00000555213 RGL2O15211 777 aa13.97□□□□□ -0.17
SHMT2-218ENST00000555213 CT47B1P0C2W7 299 aaPredicted RBP13.97□□□□□ -0.17
SHMT2-218ENST00000555213 USPL1Q5W0Q7 1092 aa13.97□□□□□ -0.17
SHMT2-218ENST00000555213 MSL1Q68DK7 614 aa13.97□□□□□ -0.17
SHMT2-218ENST00000555213 ZNF428Q96B54 188 aa13.97□□□□□ -0.17
SHMT2-218ENST00000555213 SRP68Q9UHB9 627 aaKnown RBP13.97□□□□□ -0.17
SHMT2-218ENST00000555213 TBC1D2BQ9UPU7 963 aa13.97□□□□□ -0.17
SHMT2-218ENST00000555213 VAMP4O75379 141 aa13.96□□□□□ -0.17
SHMT2-218ENST00000555213 GYS1P13807 737 aa13.96□□□□□ -0.17
SHMT2-218ENST00000555213 PDIA6Q15084 440 aa13.96□□□□□ -0.17
SHMT2-218ENST00000555213 PROSER3Q2NL68 480 aa13.96□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 98.3 ms