RNA–Protein interactions for RNA: ENST00000555067.1

VRK1-203, Transcript of vaccinia related kinase 1, humanhuman

TSL 3

Gene VRK1, Length 604 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-203ENST00000555067 FAM182BQ5T319 152 aa11.57□□□□□ -0.56
VRK1-203ENST00000555067 C1orf216Q8TAB5 229 aa11.57□□□□□ -0.56
VRK1-203ENST00000555067 USP4Q13107 963 aa11.56□□□□□ -0.56
VRK1-203ENST00000555067 TBC1D9Q6ZT07 1266 aa11.56□□□□□ -0.56
VRK1-203ENST00000555067 AVENQ9NQS1 362 aaPredicted RBP11.56□□□□□ -0.56
VRK1-203ENST00000555067 TBC1D2BQ9UPU7 963 aa11.56□□□□□ -0.56
VRK1-203ENST00000555067 PRKCSHP14314 528 aaPredicted RBP11.55□□□□□ -0.56
VRK1-203ENST00000555067 PLA2G4AP47712 749 aa11.55□□□□□ -0.56
VRK1-203ENST00000555067 CHIC2Q9UKJ5 165 aa11.55□□□□□ -0.56
VRK1-203ENST00000555067 ADH6P28332 368 aa11.54□□□□□ -0.56
VRK1-203ENST00000555067 FCHSD1Q86WN1 690 aa11.54□□□□□ -0.56
VRK1-203ENST00000555067 SCNN1DP51172 638 aa11.53□□□□□ -0.56
VRK1-203ENST00000555067 TNP2Q05952 138 aa11.53□□□□□ -0.56
VRK1-203ENST00000555067 TRIM11Q96F44 468 aa11.53□□□□□ -0.56
VRK1-203ENST00000555067 DOLKQ9UPQ8 538 aa11.53□□□□□ -0.56
VRK1-203ENST00000555067 KRTAP9-6A0A140TA67 174 aa11.52□□□□□ -0.57
VRK1-203ENST00000555067 ATXN7O15265 892 aaPredicted RBP11.52□□□□□ -0.57
VRK1-203ENST00000555067 DOC2BQ14184 412 aa11.52□□□□□ -0.57
VRK1-203ENST00000555067 ZNF295-AS1Q8N0V1 137 aa11.52□□□□□ -0.57
VRK1-203ENST00000555067 SEMA6BQ9H3T3 888 aa11.52□□□□□ -0.57
VRK1-203ENST00000555067 MAPTP10636 758 aaKnown RBP11.51□□□□□ -0.57
VRK1-203ENST00000555067 EIF4G2P78344 907 aaKnown RBP eCLIP11.51□□□□□ -0.57
VRK1-203ENST00000555067 INHAP05111 366 aa11.5□□□□□ -0.57
VRK1-203ENST00000555067 NIFKQ9BYG3 293 aaKnown RBP11.49□□□□□ -0.57
VRK1-203ENST00000555067 A0A1W2PNR3 127 aa11.48□□□□□ -0.57
VRK1-203ENST00000555067 DCDC2BA2VCK2 349 aa11.48□□□□□ -0.57
VRK1-203ENST00000555067 CD33P20138 364 aa11.48□□□□□ -0.57
VRK1-203ENST00000555067 GDF10P55107 478 aa11.48□□□□□ -0.57
VRK1-203ENST00000555067 IRF5Q13568 498 aa11.48□□□□□ -0.57
VRK1-203ENST00000555067 GATA4P43694 442 aa11.47□□□□□ -0.57
VRK1-203ENST00000555067 SIRT1Q96EB6 747 aa11.47□□□□□ -0.57
VRK1-203ENST00000555067 SPATA31C1P0DKV0 1188 aa11.46□□□□□ -0.57
VRK1-203ENST00000555067 SMTNP53814 917 aa11.46□□□□□ -0.57
VRK1-203ENST00000555067 MCM6Q14566 821 aa11.46□□□□□ -0.57
VRK1-203ENST00000555067 SLFNL1Q499Z3 407 aa11.46□□□□□ -0.57
VRK1-203ENST00000555067 ZMYM1Q5SVZ6 1142 aa11.46□□□□□ -0.57
VRK1-203ENST00000555067 ZNF468Q5VIY5 522 aaPredicted RBP11.46□□□□□ -0.57
VRK1-203ENST00000555067 PLVAPQ9BX97 442 aa11.46□□□□□ -0.57
VRK1-203ENST00000555067 FAM157BP0CG42 384 aa11.45□□□□□ -0.58
VRK1-203ENST00000555067 RSPO4Q2I0M5 234 aaPredicted RBP11.45□□□□□ -0.58
VRK1-203ENST00000555067 OXLD1Q5BKU9 147 aa11.45□□□□□ -0.58
VRK1-203ENST00000555067 AIDAQ96BJ3 306 aa11.45□□□□□ -0.58
VRK1-203ENST00000555067 MDFIQ99750 246 aa11.45□□□□□ -0.58
VRK1-203ENST00000555067 GDPD2Q9HCC8 539 aa11.45□□□□□ -0.58
VRK1-203ENST00000555067 KHNYNO15037 678 aaKnown RBP11.44□□□□□ -0.58
VRK1-203ENST00000555067 WASHC4Q2M389 1173 aa11.44□□□□□ -0.58
VRK1-203ENST00000555067 ZDHHC3Q9NYG2 299 aa11.44□□□□□ -0.58
VRK1-203ENST00000555067 IQSEC3Q9UPP2 1182 aaPredicted RBP11.44□□□□□ -0.58
VRK1-203ENST00000555067 ABL2P42684 1182 aa11.43□□□□□ -0.58
VRK1-203ENST00000555067 PCBP4P57723 403 aaKnown RBP11.43□□□□□ -0.58
VRK1-203ENST00000555067 MTFR1Q15390 333 aa11.43□□□□□ -0.58
VRK1-203ENST00000555067 SAMD5Q5TGI4 173 aa11.43□□□□□ -0.58
VRK1-203ENST00000555067 ZIC5Q96T25 663 aa11.43□□□□□ -0.58
VRK1-203ENST00000555067 VAC14Q08AM6 782 aa11.42□□□□□ -0.58
VRK1-203ENST00000555067 NKAPLQ5M9Q1 402 aa11.42□□□□□ -0.58
VRK1-203ENST00000555067 SLC4A9Q96Q91 983 aa11.42□□□□□ -0.58
VRK1-203ENST00000555067 EFSO43281 561 aa11.41□□□□□ -0.58
VRK1-203ENST00000555067 NBPF1Q3BBV0 1214 aa11.41□□□□□ -0.58
VRK1-203ENST00000555067 FOXD4L6Q3SYB3 417 aaPredicted RBP11.41□□□□□ -0.58
VRK1-203ENST00000555067 ARSJQ5FYB0 599 aaPredicted RBP11.41□□□□□ -0.58
VRK1-203ENST00000555067 FOXD4L3Q6VB84 417 aaPredicted RBP11.41□□□□□ -0.58
VRK1-203ENST00000555067 TMEM229AB2RXF0 380 aa11.4□□□□□ -0.58
VRK1-203ENST00000555067 CDK2AP1O14519 115 aa11.4□□□□□ -0.58
VRK1-203ENST00000555067 SOX11P35716 441 aa11.4□□□□□ -0.58
VRK1-203ENST00000555067 STRN4Q9NRL3 753 aa11.4□□□□□ -0.58
VRK1-203ENST00000555067 LAMC2Q13753 1193 aa11.39□□□□□ -0.59
VRK1-203ENST00000555067 MARK1Q9P0L2 795 aa11.39□□□□□ -0.59
VRK1-203ENST00000555067 USP3Q9Y6I4 520 aa11.39□□□□□ -0.59
VRK1-203ENST00000555067 ELOA3CA0A087WX78 387 aaPredicted RBP11.38□□□□□ -0.59
VRK1-203ENST00000555067 ELOA3DA6NLF2 546 aaPredicted RBP11.38□□□□□ -0.59
VRK1-203ENST00000555067 TATP17735 454 aaPredicted RBP11.38□□□□□ -0.59
VRK1-203ENST00000555067 MAP7D1Q3KQU3 841 aa11.38□□□□□ -0.59
VRK1-203ENST00000555067 ELOA3BQ3SY89 546 aa11.38□□□□□ -0.59
VRK1-203ENST00000555067 ELOA3Q8NG57 546 aa11.38□□□□□ -0.59
VRK1-203ENST00000555067 PRR12Q9ULL5 1215 aa11.38□□□□□ -0.59
VRK1-203ENST00000555067 A6NJY4 79 aa11.37□□□□□ -0.59
VRK1-203ENST00000555067 COL9A3Q14050 684 aaPredicted RBP11.36□□□□□ -0.59
VRK1-203ENST00000555067 TPSG1Q9NRR2 321 aa11.36□□□□□ -0.59
VRK1-203ENST00000555067 SERTAD1Q9UHV2 236 aa11.36□□□□□ -0.59
VRK1-203ENST00000555067 SEMA3FQ13275 785 aa11.35□□□□□ -0.59
VRK1-203ENST00000555067 COG6Q9Y2V7 657 aa11.35□□□□□ -0.59
VRK1-203ENST00000555067 SPDYE3A6NKU9 549 aa11.34□□□□□ -0.59
VRK1-203ENST00000555067 PLPP7Q8NBV4 271 aa11.34□□□□□ -0.59
VRK1-203ENST00000555067 ADARB2-AS1A8MUL3 147 aa11.33□□□□□ -0.6
VRK1-203ENST00000555067 DYRK3O43781 588 aa11.33□□□□□ -0.6
VRK1-203ENST00000555067 SYT9Q86SS6 491 aa11.33□□□□□ -0.6
VRK1-203ENST00000555067 KRTAP1-3Q8IUG1 177 aa11.33□□□□□ -0.6
VRK1-203ENST00000555067 WWC1Q8IX03 1113 aa11.33□□□□□ -0.6
VRK1-203ENST00000555067 GJA3Q9Y6H8 435 aa11.33□□□□□ -0.6
VRK1-203ENST00000555067 SIN3BO75182 1162 aa11.32□□□□□ -0.6
VRK1-203ENST00000555067 ALAS2P22557 587 aa11.32□□□□□ -0.6
VRK1-203ENST00000555067 PRRT3Q5FWE3 981 aa11.32□□□□□ -0.6
VRK1-203ENST00000555067 PRDM6Q9NQX0 595 aa11.32□□□□□ -0.6
VRK1-203ENST00000555067 CABP1Q9NZU7 370 aa11.32□□□□□ -0.6
VRK1-203ENST00000555067 TXLNAP40222 546 aa11.3□□□□□ -0.6
VRK1-203ENST00000555067 FLIIQ13045 1269 aa11.3□□□□□ -0.6
VRK1-203ENST00000555067 PCDHGA11Q9Y5H2 935 aa11.3□□□□□ -0.6
VRK1-203ENST00000555067 APBA3O96018 575 aa11.29□□□□□ -0.6
VRK1-203ENST00000555067 ARTNQ5T4W7 220 aa11.29□□□□□ -0.6
VRK1-203ENST00000555067 TNFRSF25Q93038 417 aa11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 75.6 ms