RNA–Protein interactions for RNA: ENST00000554467.5

SHMT2-212, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 3,416 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-212ENST00000554467 C22orf23Q9BZE7 217 aa14.47□□□□□ -0.09
SHMT2-212ENST00000554467 HMMRO75330 724 aa14.47□□□□□ -0.09
SHMT2-212ENST00000554467 EVA1CP58658 441 aa14.47□□□□□ -0.09
SHMT2-212ENST00000554467 ADCY9O60503 1353 aa14.47□□□□□ -0.09
SHMT2-212ENST00000554467 CPDO75976 1380 aa14.46□□□□□ -0.09
SHMT2-212ENST00000554467 TBC1D9Q6ZT07 1266 aa14.46□□□□□ -0.09
SHMT2-212ENST00000554467 SOS1Q07889 1333 aaPredicted RBP14.46□□□□□ -0.09
SHMT2-212ENST00000554467 GLIPR1L2Q4G1C9 344 aa14.46□□□□□ -0.09
SHMT2-212ENST00000554467 BEND3Q5T5X7 828 aa14.46□□□□□ -0.09
SHMT2-212ENST00000554467 WDR17Q8IZU2 1322 aa14.46□□□□□ -0.1
SHMT2-212ENST00000554467 CRYBG1Q9Y4K1 1723 aa14.46□□□□□ -0.1
SHMT2-212ENST00000554467 HOXB7P09629 217 aa14.46□□□□□ -0.1
SHMT2-212ENST00000554467 CABP4P57796 275 aa14.46□□□□□ -0.1
SHMT2-212ENST00000554467 USP16Q9Y5T5 823 aa14.46□□□□□ -0.1
SHMT2-212ENST00000554467 IL1RAPL2Q9NP60 686 aa14.45□□□□□ -0.1
SHMT2-212ENST00000554467 PPP1R42Q7Z4L9 355 aa14.44□□□□□ -0.1
SHMT2-212ENST00000554467 TTC5Q8N0Z6 440 aa14.44□□□□□ -0.1
SHMT2-212ENST00000554467 DCAF5Q96JK2 942 aa14.44□□□□□ -0.1
SHMT2-212ENST00000554467 CACNA1FO60840 1977 aa14.44□□□□□ -0.1
SHMT2-212ENST00000554467 ATP8B2P98198 1209 aa14.44□□□□□ -0.1
SHMT2-212ENST00000554467 PDIA6Q15084 440 aa14.44□□□□□ -0.1
SHMT2-212ENST00000554467 ZCRB1Q8TBF4 217 aaKnown RBP14.44□□□□□ -0.1
SHMT2-212ENST00000554467 JARID2Q92833 1246 aaPredicted RBP14.44□□□□□ -0.1
SHMT2-212ENST00000554467 TTC22Q5TAA0 569 aa14.43□□□□□ -0.1
SHMT2-212ENST00000554467 HEG1Q9ULI3 1381 aa14.43□□□□□ -0.1
SHMT2-212ENST00000554467 SRGAP3O43295 1099 aa14.43□□□□□ -0.1
SHMT2-212ENST00000554467 BTG4Q9NY30 223 aa14.43□□□□□ -0.1
SHMT2-212ENST00000554467 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP14.43□□□□□ -0.1
SHMT2-212ENST00000554467 COL5A2P05997 1499 aaPredicted RBP14.42□□□□□ -0.1
SHMT2-212ENST00000554467 PTCD1O75127 700 aaKnown RBP14.42□□□□□ -0.1
SHMT2-212ENST00000554467 C9orf78Q9NZ63 289 aaPredicted RBP14.42□□□□□ -0.1
SHMT2-212ENST00000554467 KAT6BQ8WYB5 2073 aa14.42□□□□□ -0.1
SHMT2-212ENST00000554467 XAGE3Q8WTP9 111 aa14.42□□□□□ -0.1
SHMT2-212ENST00000554467 SURF6O75683 361 aaKnown RBP14.41□□□□□ -0.1
SHMT2-212ENST00000554467 SDSP20132 328 aa14.41□□□□□ -0.1
SHMT2-212ENST00000554467 HSP90AA2PQ14568 343 aaPredicted RBP14.41□□□□□ -0.1
SHMT2-212ENST00000554467 OVOS2A0A0G2JMS6 1433 aa14.41□□□□□ -0.1
SHMT2-212ENST00000554467 KSR2Q6VAB6 950 aa14.41□□□□□ -0.1
SHMT2-212ENST00000554467 COPS6Q7L5N1 327 aa14.41□□□□□ -0.1
SHMT2-212ENST00000554467 TBC1D2Q9BYX2 928 aa14.41□□□□□ -0.1
SHMT2-212ENST00000554467 LRRCC1Q9C099 1032 aa14.41□□□□□ -0.1
SHMT2-212ENST00000554467 DDX21Q9NR30 783 aaKnown RBP eCLIP14.41□□□□□ -0.1
SHMT2-212ENST00000554467 SIPA1L3O60292 1781 aaPredicted RBP14.41□□□□□ -0.1
SHMT2-212ENST00000554467 SCN11AQ9UI33 1791 aa14.41□□□□□ -0.1
SHMT2-212ENST00000554467 RIC3Q7Z5B4 369 aa14.41□□□□□ -0.1
SHMT2-212ENST00000554467 IL2RBP14784 551 aa14.4□□□□□ -0.1
SHMT2-212ENST00000554467 HYPKQ9NX55 129 aa14.4□□□□□ -0.1
SHMT2-212ENST00000554467 NUTM1Q86Y26 1132 aa14.4□□□□□ -0.1
SHMT2-212ENST00000554467 CDC45O75419 566 aa14.4□□□□□ -0.1
SHMT2-212ENST00000554467 PDE1AP54750 535 aa14.39□□□□□ -0.11
SHMT2-212ENST00000554467 C5P01031 1676 aa14.39□□□□□ -0.11
SHMT2-212ENST00000554467 NAP1L5Q96NT1 182 aaPredicted RBP14.39□□□□□ -0.11
SHMT2-212ENST00000554467 FMNL2Q96PY5 1086 aa14.39□□□□□ -0.11
SHMT2-212ENST00000554467 PA2G4Q9UQ80 394 aaKnown RBP14.39□□□□□ -0.11
SHMT2-212ENST00000554467 SNRPA1P09661 255 aaKnown RBP14.38□□□□□ -0.11
SHMT2-212ENST00000554467 BECN1Q14457 450 aa14.38□□□□□ -0.11
SHMT2-212ENST00000554467 RBM42Q9BTD8 480 aaKnown RBP14.38□□□□□ -0.11
SHMT2-212ENST00000554467 PXDNLA1KZ92 1463 aa14.38□□□□□ -0.11
SHMT2-212ENST00000554467 PCDH11XQ9BZA7 1347 aa14.38□□□□□ -0.11
SHMT2-212ENST00000554467 PCDH11YQ9BZA8 1340 aa14.38□□□□□ -0.11
SHMT2-212ENST00000554467 MAP4K4O95819 1239 aaPredicted RBP14.38□□□□□ -0.11
SHMT2-212ENST00000554467 MYD88Q99836 296 aa14.38□□□□□ -0.11
SHMT2-212ENST00000554467 CARD10Q9BWT7 1032 aa14.38□□□□□ -0.11
SHMT2-212ENST00000554467 RRP9O43818 475 aaKnown RBP14.38□□□□□ -0.11
SHMT2-212ENST00000554467 ADAMTS2O95450 1211 aa14.38□□□□□ -0.11
SHMT2-212ENST00000554467 IBTKQ9P2D0 1353 aaPredicted RBP14.37□□□□□ -0.11
SHMT2-212ENST00000554467 ATP5J2-PTCD1G3V325 749 aa14.37□□□□□ -0.11
SHMT2-212ENST00000554467 SSH3Q8TE77 659 aa14.37□□□□□ -0.11
SHMT2-212ENST00000554467 CHMP4AQ9BY43 222 aa14.37□□□□□ -0.11
SHMT2-212ENST00000554467 ADAMTS7Q9UKP4 1686 aa14.37□□□□□ -0.11
SHMT2-212ENST00000554467 IGKV5-2P06315 115 aa14.37□□□□□ -0.11
SHMT2-212ENST00000554467 HSP90AB1P08238 724 aaKnown RBP14.37□□□□□ -0.11
SHMT2-212ENST00000554467 OS9Q13438 667 aaPredicted RBP14.37□□□□□ -0.11
SHMT2-212ENST00000554467 ZNF330Q9Y3S2 320 aaPredicted RBP14.37□□□□□ -0.11
SHMT2-212ENST00000554467 DDX58O95786 925 aaKnown RBP14.36□□□□□ -0.11
SHMT2-212ENST00000554467 XRCC6P12956 609 aaKnown RBP eCLIP14.36□□□□□ -0.11
SHMT2-212ENST00000554467 PIP4K2BP78356 416 aa14.36□□□□□ -0.11
SHMT2-212ENST00000554467 SUCLG2Q96I99 432 aa14.36□□□□□ -0.11
SHMT2-212ENST00000554467 MX1P20591 662 aa14.36□□□□□ -0.11
SHMT2-212ENST00000554467 RILPL2Q969X0 211 aa14.36□□□□□ -0.11
SHMT2-212ENST00000554467 ABCA3Q99758 1704 aa14.35□□□□□ -0.11
SHMT2-212ENST00000554467 TRIM6-TRIM34B2RNG4 842 aa14.35□□□□□ -0.11
SHMT2-212ENST00000554467 A1BGP04217 495 aa14.35□□□□□ -0.11
SHMT2-212ENST00000554467 PANK2Q9BZ23 570 aa14.35□□□□□ -0.11
SHMT2-212ENST00000554467 PODXL2Q9NZ53 605 aa14.35□□□□□ -0.11
SHMT2-212ENST00000554467 A0A0G2JS52 829 aa14.35□□□□□ -0.11
SHMT2-212ENST00000554467 KLHDC4Q8TBB5 520 aa14.35□□□□□ -0.11
SHMT2-212ENST00000554467 CLCN1P35523 988 aa14.35□□□□□ -0.11
SHMT2-212ENST00000554467 POLA2Q14181 598 aa14.35□□□□□ -0.11
SHMT2-212ENST00000554467 UNC5CLQ8IV45 518 aa14.35□□□□□ -0.11
SHMT2-212ENST00000554467 LINS1Q8NG48 757 aa14.35□□□□□ -0.11
SHMT2-212ENST00000554467 BICC1Q9H694 974 aaKnown RBP14.35□□□□□ -0.11
SHMT2-212ENST00000554467 PKD1L3Q7Z443 1732 aa14.35□□□□□ -0.11
SHMT2-212ENST00000554467 GRM8O00222 908 aa14.34□□□□□ -0.11
SHMT2-212ENST00000554467 HSP90AA1P07900 732 aaKnown RBP14.34□□□□□ -0.11
SHMT2-212ENST00000554467 ANKRD13DQ6ZTN6 518 aa14.34□□□□□ -0.11
SHMT2-212ENST00000554467 KAZALD1Q96I82 304 aa14.34□□□□□ -0.11
SHMT2-212ENST00000554467 SIL1Q9H173 461 aa14.34□□□□□ -0.11
SHMT2-212ENST00000554467 NUTM2BA6NNL0 878 aaPredicted RBP14.34□□□□□ -0.11
SHMT2-212ENST00000554467 NUTM2EB1AL46 878 aaPredicted RBP14.34□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms