RNA–Protein interactions for RNA: ENST00000550872.1

CHMP1A-209, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 2

Gene CHMP1A, Length 533 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-209ENST00000550872 SMIM5Q71RC9 77 aa21.12■□□□□ 0.97
CHMP1A-209ENST00000550872 WDR63Q8IWG1 891 aa21.12■□□□□ 0.97
CHMP1A-209ENST00000550872 PDGFDQ9GZP0 370 aaPredicted RBP21.12■□□□□ 0.97
CHMP1A-209ENST00000550872 MBIPQ9NS73 344 aa21.12■□□□□ 0.97
CHMP1A-209ENST00000550872 COL5A3P25940 1745 aaPredicted RBP21.12■□□□□ 0.97
CHMP1A-209ENST00000550872 CICQ96RK0 1608 aaPredicted RBP21.11■□□□□ 0.97
CHMP1A-209ENST00000550872 MYH14Q7Z406 1995 aaKnown RBP21.11■□□□□ 0.97
CHMP1A-209ENST00000550872 GIGYF1O75420 1035 aaPredicted RBP21.11■□□□□ 0.97
CHMP1A-209ENST00000550872 COL23A1Q86Y22 540 aaPredicted RBP21.11■□□□□ 0.97
CHMP1A-209ENST00000550872 IL16Q14005 1332 aa21.1■□□□□ 0.97
CHMP1A-209ENST00000550872 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP21.1■□□□□ 0.97
CHMP1A-209ENST00000550872 SSFA2P28290 1259 aa21.1■□□□□ 0.97
CHMP1A-209ENST00000550872 AMIGO3Q86WK7 504 aa21.1■□□□□ 0.97
CHMP1A-209ENST00000550872 A1BGP04217 495 aa21.09■□□□□ 0.97
CHMP1A-209ENST00000550872 CANXP27824 592 aaKnown RBP21.09■□□□□ 0.97
CHMP1A-209ENST00000550872 TRAPPC3LQ5T215 181 aa21.09■□□□□ 0.97
CHMP1A-209ENST00000550872 ZBTB1Q9Y2K1 713 aa21.09■□□□□ 0.97
CHMP1A-209ENST00000550872 TUBGCP6Q96RT7 1819 aa21.08■□□□□ 0.97
CHMP1A-209ENST00000550872 UBR3Q6ZT12 1888 aa21.08■□□□□ 0.97
CHMP1A-209ENST00000550872 SPON1Q9HCB6 807 aa21.08■□□□□ 0.97
CHMP1A-209ENST00000550872 KRT24Q2M2I5 525 aa21.07■□□□□ 0.96
CHMP1A-209ENST00000550872 QSER1Q2KHR3 1735 aa21.07■□□□□ 0.96
CHMP1A-209ENST00000550872 ZBTB7AO95365 584 aa21.06■□□□□ 0.96
CHMP1A-209ENST00000550872 ADRA2BP18089 450 aa21.06■□□□□ 0.96
CHMP1A-209ENST00000550872 SLC16A10Q8TF71 515 aa21.06■□□□□ 0.96
CHMP1A-209ENST00000550872 ARHGEF1Q92888 912 aaKnown RBP21.06■□□□□ 0.96
CHMP1A-209ENST00000550872 TSR2Q969E8 191 aaKnown RBP21.06■□□□□ 0.96
CHMP1A-209ENST00000550872 EIF2S2P20042 333 aaKnown RBP21.05■□□□□ 0.96
CHMP1A-209ENST00000550872 ZNF330Q9Y3S2 320 aaPredicted RBP21.05■□□□□ 0.96
CHMP1A-209ENST00000550872 SOS1Q07889 1333 aaPredicted RBP21.04■□□□□ 0.96
CHMP1A-209ENST00000550872 ZNF521Q96K83 1311 aa21.04■□□□□ 0.96
CHMP1A-209ENST00000550872 RFC4P35249 363 aa21.04■□□□□ 0.96
CHMP1A-209ENST00000550872 PIP4K2AP48426 406 aaPredicted RBP21.04■□□□□ 0.96
CHMP1A-209ENST00000550872 DUSP27Q5VZP5 1158 aa21.04■□□□□ 0.96
CHMP1A-209ENST00000550872 NPM2Q86SE8 214 aaKnown RBP21.04■□□□□ 0.96
CHMP1A-209ENST00000550872 ATF5Q9Y2D1 282 aaPredicted RBP21.04■□□□□ 0.96
CHMP1A-209ENST00000550872 CASZ1Q86V15 1759 aa21.03■□□□□ 0.96
CHMP1A-209ENST00000550872 ELL2O00472 640 aaPredicted RBP21.03■□□□□ 0.96
CHMP1A-209ENST00000550872 MTFR1LQ9H019 292 aa21.03■□□□□ 0.96
CHMP1A-209ENST00000550872 SPINK5Q9NQ38 1064 aaPredicted RBP21.03■□□□□ 0.96
CHMP1A-209ENST00000550872 IL6STP40189 918 aaPredicted RBP21.02■□□□□ 0.96
CHMP1A-209ENST00000550872 EIF5P55010 431 aaKnown RBP21.02■□□□□ 0.96
CHMP1A-209ENST00000550872 HNRNPUQ00839 825 aaKnown RBP eCLIP21.02■□□□□ 0.96
CHMP1A-209ENST00000550872 GOLGA2Q08379 1002 aa21.02■□□□□ 0.96
CHMP1A-209ENST00000550872 NECTIN2Q92692 538 aa21.02■□□□□ 0.96
CHMP1A-209ENST00000550872 MYH16Q9H6N6 1097 aa21.02■□□□□ 0.96
CHMP1A-209ENST00000550872 A0A087WZG4 1122 aa21.01■□□□□ 0.95
CHMP1A-209ENST00000550872 NBPF26B4DH59 902 aa21.01■□□□□ 0.95
CHMP1A-209ENST00000550872 HOXB7P09629 217 aa21.01■□□□□ 0.95
CHMP1A-209ENST00000550872 NBPF10Q6P3W6 841 aaKnown RBP21.01■□□□□ 0.95
CHMP1A-209ENST00000550872 NBPF15Q8N660 670 aa21.01■□□□□ 0.95
CHMP1A-209ENST00000550872 C8orf58Q8NAV2 365 aa21.01■□□□□ 0.95
CHMP1A-209ENST00000550872 FANCIQ9NVI1 1328 aa21.01■□□□□ 0.95
CHMP1A-209ENST00000550872 COL15A1P39059 1388 aa21■□□□□ 0.95
CHMP1A-209ENST00000550872 MSL1Q68DK7 614 aa21■□□□□ 0.95
CHMP1A-209ENST00000550872 ARXQ96QS3 562 aa21■□□□□ 0.95
CHMP1A-209ENST00000550872 PPP1R1BQ9UD71 204 aaPredicted RBP21■□□□□ 0.95
CHMP1A-209ENST00000550872 LAMB4A4D0S4 1761 aa21■□□□□ 0.95
CHMP1A-209ENST00000550872 ZPR1O75312 459 aa20.99■□□□□ 0.95
CHMP1A-209ENST00000550872 HDGFL1Q5TGJ6 251 aa20.99■□□□□ 0.95
CHMP1A-209ENST00000550872 SRP68Q9UHB9 627 aaKnown RBP20.99■□□□□ 0.95
CHMP1A-209ENST00000550872 MYL6BP14649 208 aa20.98■□□□□ 0.95
CHMP1A-209ENST00000550872 TSPYL6Q8N831 410 aa20.98■□□□□ 0.95
CHMP1A-209ENST00000550872 ERBB4Q15303 1308 aa20.98■□□□□ 0.95
CHMP1A-209ENST00000550872 E9PSI1 815 aa20.97■□□□□ 0.95
CHMP1A-209ENST00000550872 NARFQ9UHQ1 456 aa20.97■□□□□ 0.95
CHMP1A-209ENST00000550872 TBC1D2BQ9UPU7 963 aa20.97■□□□□ 0.95
CHMP1A-209ENST00000550872 USP42Q9H9J4 1324 aaKnown RBP20.97■□□□□ 0.95
CHMP1A-209ENST00000550872 EXOSC9Q06265 439 aaKnown RBP20.96■□□□□ 0.95
CHMP1A-209ENST00000550872 SLFN5Q08AF3 891 aa20.96■□□□□ 0.95
CHMP1A-209ENST00000550872 TWISTNBQ3B726 338 aaPredicted RBP20.96■□□□□ 0.95
CHMP1A-209ENST00000550872 USPL1Q5W0Q7 1092 aa20.96■□□□□ 0.95
CHMP1A-209ENST00000550872 DZIP3Q86Y13 1208 aaKnown RBP20.96■□□□□ 0.95
CHMP1A-209ENST00000550872 GYS1P13807 737 aa20.95■□□□□ 0.94
CHMP1A-209ENST00000550872 POLD1P28340 1107 aa20.95■□□□□ 0.94
CHMP1A-209ENST00000550872 PDIA6Q15084 440 aa20.95■□□□□ 0.94
CHMP1A-209ENST00000550872 NLGN1Q8N2Q7 840 aa20.95■□□□□ 0.94
CHMP1A-209ENST00000550872 CDCA7LQ96GN5 454 aa20.95■□□□□ 0.94
CHMP1A-209ENST00000550872 CHMP4AQ9BY43 222 aa20.95■□□□□ 0.94
CHMP1A-209ENST00000550872 ANXA1P04083 346 aa20.94■□□□□ 0.94
CHMP1A-209ENST00000550872 PTGER2P43116 358 aa20.94■□□□□ 0.94
CHMP1A-209ENST00000550872 DDX21Q9NR30 783 aaKnown RBP eCLIP20.94■□□□□ 0.94
CHMP1A-209ENST00000550872 CHPF2Q9P2E5 772 aa20.94■□□□□ 0.94
CHMP1A-209ENST00000550872 C4AP0C0L4 1744 aa20.93■□□□□ 0.94
CHMP1A-209ENST00000550872 DCAF8L1A6NGE4 600 aa20.93■□□□□ 0.94
CHMP1A-209ENST00000550872 PROSER3Q2NL68 480 aa20.93■□□□□ 0.94
CHMP1A-209ENST00000550872 DBF4Q9UBU7 674 aaPredicted RBP20.93■□□□□ 0.94
CHMP1A-209ENST00000550872 FKBP8Q14318 412 aa20.92■□□□□ 0.94
CHMP1A-209ENST00000550872 CCDC30Q5VVM6 783 aa20.92■□□□□ 0.94
CHMP1A-209ENST00000550872 SGIP1Q9BQI5 828 aa20.92■□□□□ 0.94
CHMP1A-209ENST00000550872 CAMTA2O94983 1202 aa20.91■□□□□ 0.94
CHMP1A-209ENST00000550872 BCL2L12Q9HB09 334 aa20.91■□□□□ 0.94
CHMP1A-209ENST00000550872 VAMP4O75379 141 aa20.9■□□□□ 0.94
CHMP1A-209ENST00000550872 YY1P25490 414 aa20.9■□□□□ 0.94
CHMP1A-209ENST00000550872 TTLL7Q6ZT98 887 aa20.9■□□□□ 0.94
CHMP1A-209ENST00000550872 TCERG1O14776 1098 aaKnown RBP20.89■□□□□ 0.93
CHMP1A-209ENST00000550872 MMP10P09238 476 aa20.89■□□□□ 0.93
CHMP1A-209ENST00000550872 AIMP1Q12904 312 aaKnown RBP20.89■□□□□ 0.93
CHMP1A-209ENST00000550872 KIF6Q6ZMV9 814 aa20.89■□□□□ 0.93
CHMP1A-209ENST00000550872 COPS6Q7L5N1 327 aa20.89■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 62.8 ms