RNA–Protein interactions for RNA: ENST00000545942.5

CHD4-214, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 1 (best)

Gene CHD4, Length 1,317 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-214ENST00000545942 DDR1Q08345 913 aa30.33■■■□□ 2.45
CHD4-214ENST00000545942 NARFQ9UHQ1 456 aa30.33■■■□□ 2.45
CHD4-214ENST00000545942 CANXP27824 592 aaKnown RBP30.32■■■□□ 2.44
CHD4-214ENST00000545942 RTF1Q92541 710 aaKnown RBP30.32■■■□□ 2.44
CHD4-214ENST00000545942 TEX13AQ9BXU3 409 aaPredicted RBP30.32■■■□□ 2.44
CHD4-214ENST00000545942 KIAA1551Q9HCM1 1747 aa30.31■■■□□ 2.44
CHD4-214ENST00000545942 DPEP1P16444 411 aa30.31■■■□□ 2.44
CHD4-214ENST00000545942 TM4SF1P30408 202 aa30.31■■■□□ 2.44
CHD4-214ENST00000545942 FMNL2Q96PY5 1086 aa30.31■■■□□ 2.44
CHD4-214ENST00000545942 SIPA1L3O60292 1781 aaPredicted RBP30.3■■■□□ 2.44
CHD4-214ENST00000545942 BTBD11A6QL63 1104 aa30.3■■■□□ 2.44
CHD4-214ENST00000545942 POLRMTO00411 1230 aaKnown RBP30.3■■■□□ 2.44
CHD4-214ENST00000545942 BCS1LQ9Y276 419 aa30.3■■■□□ 2.44
CHD4-214ENST00000545942 ATP10DQ9P241 1426 aa30.28■■■□□ 2.44
CHD4-214ENST00000545942 N4BP2Q86UW6 1770 aaPredicted RBP30.27■■■□□ 2.44
CHD4-214ENST00000545942 GIGYF1O75420 1035 aaPredicted RBP30.27■■■□□ 2.44
CHD4-214ENST00000545942 EIF5P55010 431 aaKnown RBP30.27■■■□□ 2.44
CHD4-214ENST00000545942 MCM10Q7L590 875 aa30.26■■■□□ 2.44
CHD4-214ENST00000545942 ADCY9O60503 1353 aa30.26■■■□□ 2.43
CHD4-214ENST00000545942 A0A087WZG4 1122 aa30.25■■■□□ 2.43
CHD4-214ENST00000545942 HTATSF1O43719 755 aaKnown RBP30.25■■■□□ 2.43
CHD4-214ENST00000545942 C1QTNF8P60827 252 aa30.25■■■□□ 2.43
CHD4-214ENST00000545942 NFIXQ14938 502 aa30.25■■■□□ 2.43
CHD4-214ENST00000545942 BCL2L12Q9HB09 334 aa30.25■■■□□ 2.43
CHD4-214ENST00000545942 KCNQ3O43525 872 aa30.24■■■□□ 2.43
CHD4-214ENST00000545942 KCNA3P22001 575 aa30.24■■■□□ 2.43
CHD4-214ENST00000545942 NEFMP07197 916 aa30.23■■■□□ 2.43
CHD4-214ENST00000545942 PIM2Q9P1W9 311 aa30.22■■■□□ 2.43
CHD4-214ENST00000545942 IL6STP40189 918 aaPredicted RBP30.21■■■□□ 2.43
CHD4-214ENST00000545942 DCTN1Q14203 1278 aa30.21■■■□□ 2.43
CHD4-214ENST00000545942 ZNF330Q9Y3S2 320 aaPredicted RBP30.21■■■□□ 2.43
CHD4-214ENST00000545942 GPBP1L1Q9HC44 474 aaPredicted RBP30.2■■■□□ 2.42
CHD4-214ENST00000545942 A1BGP04217 495 aa30.19■■■□□ 2.42
CHD4-214ENST00000545942 ARHGAP27Q6ZUM4 889 aa30.19■■■□□ 2.42
CHD4-214ENST00000545942 SERPINB2P05120 415 aa30.18■■■□□ 2.42
CHD4-214ENST00000545942 CHRNA5P30532 468 aa30.18■■■□□ 2.42
CHD4-214ENST00000545942 DALRD3Q5D0E6 543 aaKnown RBP30.18■■■□□ 2.42
CHD4-214ENST00000545942 NPM2Q86SE8 214 aaKnown RBP30.18■■■□□ 2.42
CHD4-214ENST00000545942 BRCA1P38398 1863 aaKnown RBP30.17■■■□□ 2.42
CHD4-214ENST00000545942 SNRPA1P09661 255 aaKnown RBP30.16■■■□□ 2.42
CHD4-214ENST00000545942 RALBP1Q15311 655 aa30.16■■■□□ 2.42
CHD4-214ENST00000545942 PLEKHF1Q96S99 279 aa30.16■■■□□ 2.42
CHD4-214ENST00000545942 TBC1D2BQ9UPU7 963 aa30.16■■■□□ 2.42
CHD4-214ENST00000545942 USP16Q9Y5T5 823 aa30.16■■■□□ 2.42
CHD4-214ENST00000545942 TAF7Q15545 349 aaPredicted RBP30.15■■■□□ 2.42
CHD4-214ENST00000545942 BICDL1Q6ZP65 573 aa30.15■■■□□ 2.42
CHD4-214ENST00000545942 ZNF526Q8TF50 670 aaPredicted RBP30.15■■■□□ 2.42
CHD4-214ENST00000545942 PNNQ9H307 717 aaKnown RBP30.15■■■□□ 2.42
CHD4-214ENST00000545942 NRXN2Q9P2S2 1712 aa30.14■■■□□ 2.41
CHD4-214ENST00000545942 TBC1D9BQ66K14 1250 aa30.13■■■□□ 2.41
CHD4-214ENST00000545942 PRAMEF22A3QJZ6 481 aa30.12■■■□□ 2.41
CHD4-214ENST00000545942 DDX10Q13206 875 aaKnown RBP30.11■■■□□ 2.41
CHD4-214ENST00000545942 NFE2L2Q16236 605 aa30.11■■■□□ 2.41
CHD4-214ENST00000545942 SCN7AQ01118 1682 aa30.1■■■□□ 2.41
CHD4-214ENST00000545942 AFDNP55196 1824 aaKnown RBP30.1■■■□□ 2.41
CHD4-214ENST00000545942 MAPK8IP3Q9UPT6 1336 aa30.1■■■□□ 2.41
CHD4-214ENST00000545942 SENP3-EIF4A1A0A087X0R7 540 aa30.09■■■□□ 2.41
CHD4-214ENST00000545942 CAMTA2O94983 1202 aa30.09■■■□□ 2.41
CHD4-214ENST00000545942 DZIP3Q86Y13 1208 aaKnown RBP30.09■■■□□ 2.41
CHD4-214ENST00000545942 ARFGEF1Q9Y6D6 1849 aa30.08■■■□□ 2.41
CHD4-214ENST00000545942 PNISRQ8TF01 805 aaKnown RBP30.08■■■□□ 2.41
CHD4-214ENST00000545942 CARMIL3Q8ND23 1372 aa30.08■■■□□ 2.41
CHD4-214ENST00000545942 PIP4K2AP48426 406 aaPredicted RBP30.07■■■□□ 2.4
CHD4-214ENST00000545942 MIS18AQ9NYP9 233 aa30.07■■■□□ 2.4
CHD4-214ENST00000545942 C2CD5Q86YS7 1000 aa30.05■■■□□ 2.4
CHD4-214ENST00000545942 SETDB2Q96T68 719 aa30.05■■■□□ 2.4
CHD4-214ENST00000545942 H0YIN7 160 aa30.04■■■□□ 2.4
CHD4-214ENST00000545942 C9orf131Q5VYM1 1079 aa30.03■■■□□ 2.4
CHD4-214ENST00000545942 MYBBP1AQ9BQG0 1328 aaKnown RBP30.03■■■□□ 2.4
CHD4-214ENST00000545942 PRR5LQ6MZQ0 368 aa30.02■■■□□ 2.4
CHD4-214ENST00000545942 TTLL6Q8N841 843 aa30.02■■■□□ 2.4
CHD4-214ENST00000545942 BRIP1Q9BX63 1249 aa30.02■■■□□ 2.4
CHD4-214ENST00000545942 NBPF26B4DH59 902 aa30.01■■■□□ 2.4
CHD4-214ENST00000545942 NBPF10Q6P3W6 841 aaKnown RBP30.01■■■□□ 2.4
CHD4-214ENST00000545942 CLEC4GQ6UXB4 293 aa30.01■■■□□ 2.4
CHD4-214ENST00000545942 NBPF15Q8N660 670 aa30.01■■■□□ 2.4
CHD4-214ENST00000545942 THUMPD2Q9BTF0 503 aaKnown RBP30.01■■■□□ 2.4
CHD4-214ENST00000545942 PDZRN3Q9UPQ7 1066 aa30.01■■■□□ 2.4
CHD4-214ENST00000545942 DLG5Q8TDM6 1919 aa30.01■■■□□ 2.4
CHD4-214ENST00000545942 PDE6BP35913 854 aa30■■■□□ 2.39
CHD4-214ENST00000545942 ZNF652Q9Y2D9 606 aa30■■■□□ 2.39
CHD4-214ENST00000545942 NPHP1O15259 732 aa29.99■■■□□ 2.39
CHD4-214ENST00000545942 CNBD1Q8NA66 436 aa29.99■■■□□ 2.39
CHD4-214ENST00000545942 BCORQ6W2J9 1755 aa29.98■■■□□ 2.39
CHD4-214ENST00000545942 DLEC1Q9Y238 1755 aa29.98■■■□□ 2.39
CHD4-214ENST00000545942 KIF3CO14782 793 aa29.97■■■□□ 2.39
CHD4-214ENST00000545942 EIF4A1P60842 406 aaKnown RBP29.97■■■□□ 2.39
CHD4-214ENST00000545942 CCDC24Q8N4L8 307 aa29.97■■■□□ 2.39
CHD4-214ENST00000545942 RNF181Q9P0P0 153 aa29.97■■■□□ 2.39
CHD4-214ENST00000545942 RGL2O15211 777 aa29.96■■■□□ 2.39
CHD4-214ENST00000545942 ST5P78524 1137 aa29.96■■■□□ 2.39
CHD4-214ENST00000545942 KDM3BQ7LBC6 1761 aa29.96■■■□□ 2.39
CHD4-214ENST00000545942 RIPK4P57078 832 aa29.95■■■□□ 2.38
CHD4-214ENST00000545942 ZNF622Q969S3 477 aaKnown RBP eCLIP29.95■■■□□ 2.382e-12■■□□□ 13.1
CHD4-214ENST00000545942 LAMB4A4D0S4 1761 aa29.93■■■□□ 2.38
CHD4-214ENST00000545942 NBPF5PQ86XG9 351 aaPredicted RBP29.93■■■□□ 2.38
CHD4-214ENST00000545942 ANKRD31Q8N7Z5 1873 aa29.92■■■□□ 2.38
CHD4-214ENST00000545942 TMPOP42166 694 aaKnown RBP29.92■■■□□ 2.38
CHD4-214ENST00000545942 RASSF7Q02833 373 aa29.92■■■□□ 2.38
CHD4-214ENST00000545942 LMOD3Q0VAK6 560 aa29.92■■■□□ 2.38
Retrieved 100 of 20,778 RNA–protein pairs in 65.4 ms