RNA–Protein interactions for RNA: ENST00000544983.1

SNHG1-221, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 2

Gene SNHG1, Length 870 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-221ENST00000544983 SLC15A2Q16348 729 aa15.19■□□□□ 0.02
SNHG1-221ENST00000544983 TRMT2AQ8IZ69 625 aaKnown RBP15.19■□□□□ 0.02
SNHG1-221ENST00000544983 TSR2Q969E8 191 aaKnown RBP15.19■□□□□ 0.02
SNHG1-221ENST00000544983 CCDC87Q9NVE4 849 aa15.19■□□□□ 0.02
SNHG1-221ENST00000544983 TJP1Q07157 1748 aa15.19■□□□□ 0.02
SNHG1-221ENST00000544983 C4BP0C0L5 1744 aa15.18■□□□□ 0.02
SNHG1-221ENST00000544983 COL5A3P25940 1745 aaPredicted RBP15.18■□□□□ 0.02
SNHG1-221ENST00000544983 DUSP27Q5VZP5 1158 aa15.18■□□□□ 0.02
SNHG1-221ENST00000544983 SPINK5Q9NQ38 1064 aaPredicted RBP15.18■□□□□ 0.02
SNHG1-221ENST00000544983 RTCBQ9Y3I0 505 aaKnown RBP15.18■□□□□ 0.02
SNHG1-221ENST00000544983 USP16Q9Y5T5 823 aa15.18■□□□□ 0.02
SNHG1-221ENST00000544983 RPS6KA4O75676 772 aa15.17■□□□□ 0.02
SNHG1-221ENST00000544983 CT47B1P0C2W7 299 aaPredicted RBP15.17■□□□□ 0.02
SNHG1-221ENST00000544983 SSFA2P28290 1259 aa15.17■□□□□ 0.02
SNHG1-221ENST00000544983 NPM2Q86SE8 214 aaKnown RBP15.17■□□□□ 0.02
SNHG1-221ENST00000544983 ZNF428Q96B54 188 aa15.17■□□□□ 0.02
SNHG1-221ENST00000544983 TFCP2L1Q9NZI6 479 aa15.17■□□□□ 0.02
SNHG1-221ENST00000544983 IL6STP40189 918 aaPredicted RBP15.16■□□□□ 0.02
SNHG1-221ENST00000544983 INTS5Q6P9B9 1019 aaKnown RBP15.16■□□□□ 0.02
SNHG1-221ENST00000544983 LAMB4A4D0S4 1761 aa15.16■□□□□ 0.02
SNHG1-221ENST00000544983 A0A087WZG4 1122 aa15.15■□□□□ 0.02
SNHG1-221ENST00000544983 GNPATO15228 680 aa15.15■□□□□ 0.02
SNHG1-221ENST00000544983 TWISTNBQ3B726 338 aaPredicted RBP15.15■□□□□ 0.02
SNHG1-221ENST00000544983 HDGFL1Q5TGJ6 251 aa15.15■□□□□ 0.02
SNHG1-221ENST00000544983 CCDC30Q5VVM6 783 aa15.15■□□□□ 0.02
SNHG1-221ENST00000544983 C8orf58Q8NAV2 365 aa15.15■□□□□ 0.02
SNHG1-221ENST00000544983 ANO8Q9HCE9 1232 aaPredicted RBP15.15■□□□□ 0.02
SNHG1-221ENST00000544983 EXOSC9Q06265 439 aaKnown RBP15.14■□□□□ 0.01
SNHG1-221ENST00000544983 ZNF827Q17R98 1081 aa15.14■□□□□ 0.01
SNHG1-221ENST00000544983 TRAPPC3LQ5T215 181 aa15.14■□□□□ 0.01
SNHG1-221ENST00000544983 CDCA7LQ96GN5 454 aa15.14■□□□□ 0.01
SNHG1-221ENST00000544983 DBF4Q9UBU7 674 aaPredicted RBP15.14■□□□□ 0.01
SNHG1-221ENST00000544983 MYH14Q7Z406 1995 aaKnown RBP15.14■□□□□ 0.01
SNHG1-221ENST00000544983 QSER1Q2KHR3 1735 aa15.14■□□□□ 0.01
SNHG1-221ENST00000544983 PRAMEF22A3QJZ6 481 aa15.13■□□□□ 0.01
SNHG1-221ENST00000544983 A1BGP04217 495 aa15.13■□□□□ 0.01
SNHG1-221ENST00000544983 EIF2S2P20042 333 aaKnown RBP15.13■□□□□ 0.01
SNHG1-221ENST00000544983 KRT24Q2M2I5 525 aa15.13■□□□□ 0.01
SNHG1-221ENST00000544983 SLC16A10Q8TF71 515 aa15.13■□□□□ 0.01
SNHG1-221ENST00000544983 DDX21Q9NR30 783 aaKnown RBP eCLIP15.13■□□□□ 0.01
SNHG1-221ENST00000544983 ZBTB1Q9Y2K1 713 aa15.13■□□□□ 0.01
SNHG1-221ENST00000544983 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP15.12■□□□□ 0.01
SNHG1-221ENST00000544983 ELL2O00472 640 aaPredicted RBP15.12■□□□□ 0.01
SNHG1-221ENST00000544983 RGL2O15211 777 aa15.12■□□□□ 0.01
SNHG1-221ENST00000544983 VAMP4O75379 141 aa15.12■□□□□ 0.01
SNHG1-221ENST00000544983 CANXP27824 592 aaKnown RBP15.12■□□□□ 0.01
SNHG1-221ENST00000544983 EIF5P55010 431 aaKnown RBP15.12■□□□□ 0.01
SNHG1-221ENST00000544983 TSPYL6Q8N831 410 aa15.12■□□□□ 0.01
SNHG1-221ENST00000544983 STK31Q9BXU1 1019 aa15.12■□□□□ 0.01
SNHG1-221ENST00000544983 HYPKQ9NX55 129 aa15.12■□□□□ 0.01
SNHG1-221ENST00000544983 UBR3Q6ZT12 1888 aa15.12■□□□□ 0.01
SNHG1-221ENST00000544983 LRP5O75197 1615 aa15.11■□□□□ 0.01
SNHG1-221ENST00000544983 NBPF26B4DH59 902 aa15.1■□□□□ 0.01
SNHG1-221ENST00000544983 RFC4P35249 363 aa15.1■□□□□ 0.01
SNHG1-221ENST00000544983 R3HDM1Q15032 1099 aaKnown RBP15.1■□□□□ 0.01
SNHG1-221ENST00000544983 NBPF10Q6P3W6 841 aaKnown RBP15.1■□□□□ 0.01
SNHG1-221ENST00000544983 NBPF15Q8N660 670 aa15.1■□□□□ 0.01
SNHG1-221ENST00000544983 CACNA1FO60840 1977 aa15.1■□□□□ 0.01
SNHG1-221ENST00000544983 PNPLA7Q6ZV29 1317 aa15.1■□□□□ 0.01
SNHG1-221ENST00000544983 COL15A1P39059 1388 aa15.1■□□□□ 0.01
SNHG1-221ENST00000544983 YY1P25490 414 aa15.09■□□□□ 0.01
SNHG1-221ENST00000544983 PDIA6Q15084 440 aa15.09■□□□□ 0.01
SNHG1-221ENST00000544983 ARHGEF1Q92888 912 aaKnown RBP15.09■□□□□ 0.01
SNHG1-221ENST00000544983 CHPF2Q9P2E5 772 aa15.09■□□□□ 0.01
SNHG1-221ENST00000544983 ZPR1O75312 459 aa15.08■□□□□ 0
SNHG1-221ENST00000544983 COL23A1Q86Y22 540 aaPredicted RBP15.08■□□□□ 0
SNHG1-221ENST00000544983 NARFQ9UHQ1 456 aa15.08■□□□□ 0
SNHG1-221ENST00000544983 ERVV-1B6SEH8 477 aa15.07■□□□□ 0
SNHG1-221ENST00000544983 PHF14O94880 888 aa15.07■□□□□ 0
SNHG1-221ENST00000544983 MYL6BP14649 208 aa15.07■□□□□ 0
SNHG1-221ENST00000544983 ALDH1L2Q3SY69 923 aa15.07■□□□□ 0
SNHG1-221ENST00000544983 CLEC4GQ6UXB4 293 aa15.07■□□□□ 0
SNHG1-221ENST00000544983 LRP10Q7Z4F1 713 aa15.07■□□□□ 0
SNHG1-221ENST00000544983 NECTIN2Q92692 538 aa15.07■□□□□ 0
SNHG1-221ENST00000544983 YTHDC1Q96MU7 727 aaKnown RBP15.07■□□□□ 0
SNHG1-221ENST00000544983 TUBGCP6Q96RT7 1819 aa15.06■□□□□ 0
SNHG1-221ENST00000544983 MSH5O43196 834 aa15.06■□□□□ 0
SNHG1-221ENST00000544983 KIF6Q6ZMV9 814 aa15.06■□□□□ 0
SNHG1-221ENST00000544983 DZIP3Q86Y13 1208 aaKnown RBP15.06■□□□□ 0
SNHG1-221ENST00000544983 NLGN1Q8N2Q7 840 aa15.06■□□□□ 0
SNHG1-221ENST00000544983 ZNF652Q9Y2D9 606 aa15.06■□□□□ 0
SNHG1-221ENST00000544983 ZNF330Q9Y3S2 320 aaPredicted RBP15.06■□□□□ 0
SNHG1-221ENST00000544983 USP42Q9H9J4 1324 aaKnown RBP15.06■□□□□ 0
SNHG1-221ENST00000544983 SLC4A2P04920 1241 aa15.05■□□□□ -0
SNHG1-221ENST00000544983 AMIGO3Q86WK7 504 aa15.05■□□□□ -0
SNHG1-221ENST00000544983 MTFR1LQ9H019 292 aa15.05■□□□□ -0
SNHG1-221ENST00000544983 PSDA5PKW4 1024 aaPredicted RBP15.04■□□□□ -0
SNHG1-221ENST00000544983 DDX58O95786 925 aaKnown RBP15.04■□□□□ -0
SNHG1-221ENST00000544983 PIP4K2AP48426 406 aaPredicted RBP15.04■□□□□ -0
SNHG1-221ENST00000544983 BRPF1P55201 1214 aaPredicted RBP15.04■□□□□ -0
SNHG1-221ENST00000544983 PROSER3Q2NL68 480 aa15.04■□□□□ -0
SNHG1-221ENST00000544983 COPS6Q7L5N1 327 aa15.04■□□□□ -0
SNHG1-221ENST00000544983 MAP3K15Q6ZN16 1313 aa15.03■□□□□ -0
SNHG1-221ENST00000544983 CAMTA2O94983 1202 aa15.03■□□□□ -0
SNHG1-221ENST00000544983 XAGE3Q8WTP9 111 aa15.03■□□□□ -0
SNHG1-221ENST00000544983 ARXQ96QS3 562 aa15.03■□□□□ -0
SNHG1-221ENST00000544983 TBC1D2BQ9UPU7 963 aa15.03■□□□□ -0
SNHG1-221ENST00000544983 CASZ1Q86V15 1759 aa15.03■□□□□ -0
SNHG1-221ENST00000544983 GYS1P13807 737 aa15.02■□□□□ -0
SNHG1-221ENST00000544983 HSP90AB3PQ58FF7 597 aa15.02■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 153.1 ms