RNA–Protein interactions for RNA: ENST00000541586.5

CCM2-218, Transcript of CCM2 scaffold protein, humanhuman

TSL 3 BASIC

Gene CCM2, Length 1,719 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2-218ENST00000541586 KCPQ6ZWJ8 1503 aa35.55■■■■□ 3.28
CCM2-218ENST00000541586 KDM3BQ7LBC6 1761 aa35.55■■■■□ 3.28
CCM2-218ENST00000541586 HEG1Q9ULI3 1381 aa35.55■■■■□ 3.28
CCM2-218ENST00000541586 PDE3AQ14432 1141 aa35.54■■■■□ 3.28
CCM2-218ENST00000541586 SLC27A3Q5K4L6 730 aa35.54■■■■□ 3.28
CCM2-218ENST00000541586 SNRPA1P09661 255 aaKnown RBP35.54■■■■□ 3.28
CCM2-218ENST00000541586 ITPK1Q13572 414 aa35.54■■■■□ 3.28
CCM2-218ENST00000541586 DNAJC10Q8IXB1 793 aa35.53■■■■□ 3.28
CCM2-218ENST00000541586 GIGYF1O75420 1035 aaPredicted RBP35.52■■■■□ 3.28
CCM2-218ENST00000541586 VSIG10Q8N0Z9 540 aa35.52■■■■□ 3.28
CCM2-218ENST00000541586 BRPF1P55201 1214 aaPredicted RBP35.51■■■■□ 3.27
CCM2-218ENST00000541586 USP16Q9Y5T5 823 aa35.51■■■■□ 3.27
CCM2-218ENST00000541586 LY75O60449 1722 aa35.49■■■■□ 3.27
CCM2-218ENST00000541586 ZKSCAN2Q63HK3 967 aa35.49■■■■□ 3.27
CCM2-218ENST00000541586 UBR2Q8IWV8 1755 aa35.49■■■■□ 3.27
CCM2-218ENST00000541586 EIF2S2P20042 333 aaKnown RBP35.49■■■■□ 3.27
CCM2-218ENST00000541586 KIF16BQ96L93 1317 aa35.48■■■■□ 3.27
CCM2-218ENST00000541586 MRPL50Q8N5N7 158 aaKnown RBP35.48■■■■□ 3.27
CCM2-218ENST00000541586 LINC00116Q8NCU8 138 aa35.48■■■■□ 3.27
CCM2-218ENST00000541586 NOB1Q9ULX3 412 aaKnown RBP35.48■■■■□ 3.27
CCM2-218ENST00000541586 B4GALNT3Q6L9W6 998 aa35.47■■■■□ 3.27
CCM2-218ENST00000541586 PANK1Q8TE04 598 aa35.47■■■■□ 3.27
CCM2-218ENST00000541586 NECTIN2Q92692 538 aa35.47■■■■□ 3.27
CCM2-218ENST00000541586 TNNQ9UQP3 1299 aa35.47■■■■□ 3.27
CCM2-218ENST00000541586 TEX13AQ9BXU3 409 aaPredicted RBP35.46■■■■□ 3.27
CCM2-218ENST00000541586 TCERG1O14776 1098 aaKnown RBP35.45■■■■□ 3.27
CCM2-218ENST00000541586 STARD3NLO95772 234 aa35.45■■■■□ 3.27
CCM2-218ENST00000541586 SOCS7O14512 581 aa35.43■■■■□ 3.26
CCM2-218ENST00000541586 CYP19A1P11511 503 aaPredicted RBP35.43■■■■□ 3.26
CCM2-218ENST00000541586 RLBP1P12271 317 aa35.43■■■■□ 3.26
CCM2-218ENST00000541586 IPO8O15397 1037 aaKnown RBP35.42■■■■□ 3.26
CCM2-218ENST00000541586 TRIM27P14373 513 aa35.42■■■■□ 3.26
CCM2-218ENST00000541586 ATF7IPQ6VMQ6 1270 aa35.42■■■■□ 3.26
CCM2-218ENST00000541586 CLUAP1Q96AJ1 413 aa35.41■■■■□ 3.26
CCM2-218ENST00000541586 A1BGP04217 495 aa35.4■■■■□ 3.26
CCM2-218ENST00000541586 CRKLP46109 303 aaKnown RBP35.4■■■■□ 3.26
CCM2-218ENST00000541586 CCDC136Q96JN2 1154 aa35.4■■■■□ 3.26
CCM2-218ENST00000541586 COG6Q9Y2V7 657 aa35.4■■■■□ 3.26
CCM2-218ENST00000541586 RGPD3A6NKT7 1758 aaPredicted RBP35.39■■■■□ 3.26
CCM2-218ENST00000541586 RGPD4Q7Z3J3 1758 aa35.39■■■■□ 3.26
CCM2-218ENST00000541586 SOS1Q07889 1333 aaPredicted RBP35.39■■■■□ 3.26
CCM2-218ENST00000541586 MS4A1P11836 297 aa35.39■■■■□ 3.26
CCM2-218ENST00000541586 PIP4K2AP48426 406 aaPredicted RBP35.39■■■■□ 3.26
CCM2-218ENST00000541586 DZIP1LQ8IYY4 767 aaKnown RBP35.39■■■■□ 3.26
CCM2-218ENST00000541586 HDGFL1Q5TGJ6 251 aa35.37■■■■□ 3.25
CCM2-218ENST00000541586 FTSJ3Q8IY81 847 aaKnown RBP35.37■■■■□ 3.25
CCM2-218ENST00000541586 AK7Q96M32 723 aa35.37■■■■□ 3.25
CCM2-218ENST00000541586 HOXB7P09629 217 aa35.36■■■■□ 3.25
CCM2-218ENST00000541586 HMGB2P26583 209 aaKnown RBP35.36■■■■□ 3.25
CCM2-218ENST00000541586 TJP1Q07157 1748 aa35.36■■■■□ 3.25
CCM2-218ENST00000541586 ARHGAP45Q92619 1136 aa35.35■■■■□ 3.25
CCM2-218ENST00000541586 C5P01031 1676 aa35.35■■■■□ 3.25
CCM2-218ENST00000541586 INTS5Q6P9B9 1019 aaKnown RBP35.35■■■■□ 3.25
CCM2-218ENST00000541586 CCDC87Q9NVE4 849 aa35.35■■■■□ 3.25
CCM2-218ENST00000541586 ZNF330Q9Y3S2 320 aaPredicted RBP35.35■■■■□ 3.25
CCM2-218ENST00000541586 GNPATO15228 680 aa35.34■■■■□ 3.25
CCM2-218ENST00000541586 SMIM5Q71RC9 77 aa35.34■■■■□ 3.25
CCM2-218ENST00000541586 ZBTB1Q9Y2K1 713 aa35.34■■■■□ 3.25
CCM2-218ENST00000541586 ZNF827Q17R98 1081 aa35.33■■■■□ 3.25
CCM2-218ENST00000541586 NBPF14Q5TI25 921 aa35.33■■■■□ 3.25
CCM2-218ENST00000541586 ANO8Q9HCE9 1232 aaPredicted RBP35.33■■■■□ 3.25
CCM2-218ENST00000541586 TFCP2L1Q9NZI6 479 aa35.33■■■■□ 3.25
CCM2-218ENST00000541586 RC3H1Q5TC82 1133 aaKnown RBP35.32■■■■□ 3.25
CCM2-218ENST00000541586 ZNF831Q5JPB2 1677 aa35.32■■■■□ 3.24
CCM2-218ENST00000541586 TAF1LQ8IZX4 1826 aa35.32■■■■□ 3.24
CCM2-218ENST00000541586 MYL6BP14649 208 aa35.32■■■■□ 3.24
CCM2-218ENST00000541586 STK32BQ9NY57 414 aa35.32■■■■□ 3.24
CCM2-218ENST00000541586 CNTNAP4Q9C0A0 1308 aa35.31■■■■□ 3.24
CCM2-218ENST00000541586 ANXA1P04083 346 aa35.3■■■■□ 3.24
CCM2-218ENST00000541586 CCDC30Q5VVM6 783 aa35.3■■■■□ 3.24
CCM2-218ENST00000541586 AKT1S1Q96B36 256 aa35.3■■■■□ 3.24
CCM2-218ENST00000541586 RREB1Q92766 1687 aa35.3■■■■□ 3.24
CCM2-218ENST00000541586 MVPQ14764 893 aaKnown RBP35.29■■■■□ 3.24
CCM2-218ENST00000541586 CHPF2Q9P2E5 772 aa35.29■■■■□ 3.24
CCM2-218ENST00000541586 C4BP0C0L5 1744 aa35.29■■■■□ 3.24
CCM2-218ENST00000541586 PHF14O94880 888 aa35.29■■■■□ 3.24
CCM2-218ENST00000541586 SLC4A2P04920 1241 aa35.29■■■■□ 3.24
CCM2-218ENST00000541586 SLC15A2Q16348 729 aa35.29■■■■□ 3.24
CCM2-218ENST00000541586 NBPF26B4DH59 902 aa35.28■■■■□ 3.24
CCM2-218ENST00000541586 NBPF10Q6P3W6 841 aaKnown RBP35.28■■■■□ 3.24
CCM2-218ENST00000541586 NBPF15Q8N660 670 aa35.28■■■■□ 3.24
CCM2-218ENST00000541586 ARXQ96QS3 562 aa35.28■■■■□ 3.24
CCM2-218ENST00000541586 RTCBQ9Y3I0 505 aaKnown RBP35.28■■■■□ 3.24
CCM2-218ENST00000541586 COL5A3P25940 1745 aaPredicted RBP35.27■■■■□ 3.24
CCM2-218ENST00000541586 MYH14Q7Z406 1995 aaKnown RBP35.27■■■■□ 3.24
CCM2-218ENST00000541586 NUP188Q5SRE5 1749 aa35.26■■■■□ 3.24
CCM2-218ENST00000541586 NPM2Q86SE8 214 aaKnown RBP35.26■■■■□ 3.24
CCM2-218ENST00000541586 AMIGO3Q86WK7 504 aa35.26■■■■□ 3.24
CCM2-218ENST00000541586 STK31Q9BXU1 1019 aa35.26■■■■□ 3.24
CCM2-218ENST00000541586 CHMP4AQ9BY43 222 aa35.26■■■■□ 3.24
CCM2-218ENST00000541586 PROSER3Q2NL68 480 aa35.26■■■■□ 3.23
CCM2-218ENST00000541586 RPS6KA4O75676 772 aa35.25■■■■□ 3.23
CCM2-218ENST00000541586 PDIA6Q15084 440 aa35.25■■■■□ 3.23
CCM2-218ENST00000541586 TMEM57Q8N5G2 664 aa35.25■■■■□ 3.23
CCM2-218ENST00000541586 API5Q9BZZ5 524 aaKnown RBP35.25■■■■□ 3.23
CCM2-218ENST00000541586 DBF4Q9UBU7 674 aaPredicted RBP35.24■■■■□ 3.23
CCM2-218ENST00000541586 CICQ96RK0 1608 aaPredicted RBP35.24■■■■□ 3.23
CCM2-218ENST00000541586 ITPRIPQ8IWB1 547 aa35.23■■■■□ 3.23
CCM2-218ENST00000541586 DDX21Q9NR30 783 aaKnown RBP eCLIP35.23■■■■□ 3.23
CCM2-218ENST00000541586 LAMB4A4D0S4 1761 aa35.23■■■■□ 3.23
Retrieved 100 of 20,778 RNA–protein pairs in 58 ms