RNA–Protein interactions for RNA: ENST00000541488.1

PRKDC-210, Transcript of protein kinase, DNA-activated, catalytic subunit, humanhuman

TSL 3

Gene PRKDC, Length 719 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDC-210ENST00000541488 CLUAP1Q96AJ1 413 aa8.64□□□□□ -1.03
PRKDC-210ENST00000541488 WWC1Q8IX03 1113 aa8.63□□□□□ -1.03
PRKDC-210ENST00000541488 PLPP7Q8NBV4 271 aa8.63□□□□□ -1.03
PRKDC-210ENST00000541488 TPSG1Q9NRR2 321 aa8.63□□□□□ -1.03
PRKDC-210ENST00000541488 IL2RAP01589 272 aa8.62□□□□□ -1.03
PRKDC-210ENST00000541488 USP4Q13107 963 aa8.62□□□□□ -1.03
PRKDC-210ENST00000541488 CLN3Q13286 438 aa8.62□□□□□ -1.03
PRKDC-210ENST00000541488 CNKSR1Q969H4 720 aa8.62□□□□□ -1.03
PRKDC-210ENST00000541488 GNRH1P01148 92 aa8.6□□□□□ -1.03
PRKDC-210ENST00000541488 SKIP12755 728 aa8.6□□□□□ -1.03
PRKDC-210ENST00000541488 PHKA2P46019 1235 aa8.6□□□□□ -1.03
PRKDC-210ENST00000541488 CTBSQ01459 385 aa8.6□□□□□ -1.03
PRKDC-210ENST00000541488 PRSS36Q5K4E3 855 aa8.6□□□□□ -1.03
PRKDC-210ENST00000541488 ABHD17AQ96GS6 310 aa8.6□□□□□ -1.03
PRKDC-210ENST00000541488 ATXN7L1Q9ULK2 861 aaPredicted RBP8.6□□□□□ -1.03
PRKDC-210ENST00000541488 SPATA31C1P0DKV0 1188 aa8.59□□□□□ -1.03
PRKDC-210ENST00000541488 SOX11P35716 441 aa8.59□□□□□ -1.03
PRKDC-210ENST00000541488 CENPCQ03188 943 aa8.59□□□□□ -1.03
PRKDC-210ENST00000541488 CHSY3Q70JA7 882 aa8.59□□□□□ -1.03
PRKDC-210ENST00000541488 DEPDC4Q8N2C3 294 aa8.59□□□□□ -1.03
PRKDC-210ENST00000541488 TRIM11Q96F44 468 aa8.59□□□□□ -1.03
PRKDC-210ENST00000541488 NEURL1BA8MQ27 555 aa8.58□□□□□ -1.04
PRKDC-210ENST00000541488 FGFR3P22607 806 aa8.58□□□□□ -1.04
PRKDC-210ENST00000541488 LRP8Q14114 963 aa8.58□□□□□ -1.04
PRKDC-210ENST00000541488 LCE1DQ5T752 114 aa8.58□□□□□ -1.04
PRKDC-210ENST00000541488 ADAMTS19Q8TE59 1207 aa8.58□□□□□ -1.04
PRKDC-210ENST00000541488 ESYT1Q9BSJ8 1104 aa8.58□□□□□ -1.04
PRKDC-210ENST00000541488 ALG2Q9H553 416 aa8.58□□□□□ -1.04
PRKDC-210ENST00000541488 ETNK1Q9HBU6 452 aa8.58□□□□□ -1.04
PRKDC-210ENST00000541488 ARAFP10398 606 aa8.57□□□□□ -1.04
PRKDC-210ENST00000541488 CHIC2Q9UKJ5 165 aa8.57□□□□□ -1.04
PRKDC-210ENST00000541488 HDGFL1Q5TGJ6 251 aa8.56□□□□□ -1.04
PRKDC-210ENST00000541488 TMEM214Q6NUQ4 689 aaKnown RBP8.56□□□□□ -1.04
PRKDC-210ENST00000541488 ZSCAN10Q96SZ4 725 aaPredicted RBP8.56□□□□□ -1.04
PRKDC-210ENST00000541488 PLVAPQ9BX97 442 aa8.56□□□□□ -1.04
PRKDC-210ENST00000541488 RUBCNLQ9H714 662 aa8.56□□□□□ -1.04
PRKDC-210ENST00000541488 NDFIP2Q9NV92 336 aa8.56□□□□□ -1.04
PRKDC-210ENST00000541488 SERTAD1Q9UHV2 236 aa8.56□□□□□ -1.04
PRKDC-210ENST00000541488 A0A1B0GTH6 734 aa8.55□□□□□ -1.04
PRKDC-210ENST00000541488 GDF10P55107 478 aa8.55□□□□□ -1.04
PRKDC-210ENST00000541488 NCOA4Q13772 614 aa8.55□□□□□ -1.04
PRKDC-210ENST00000541488 LBRQ14739 615 aaKnown RBP8.55□□□□□ -1.04
PRKDC-210ENST00000541488 TLR1Q15399 786 aa8.55□□□□□ -1.04
PRKDC-210ENST00000541488 MAP7D1Q3KQU3 841 aa8.55□□□□□ -1.04
PRKDC-210ENST00000541488 ESCO1Q5FWF5 840 aa8.55□□□□□ -1.04
PRKDC-210ENST00000541488 SIRT1Q96EB6 747 aa8.55□□□□□ -1.04
PRKDC-210ENST00000541488 XAGE2Q96GT9 111 aa8.55□□□□□ -1.04
PRKDC-210ENST00000541488 BNIP3LO60238 219 aa8.54□□□□□ -1.04
PRKDC-210ENST00000541488 SCNN1DP51172 638 aa8.54□□□□□ -1.04
PRKDC-210ENST00000541488 EML3Q32P44 896 aa8.54□□□□□ -1.04
PRKDC-210ENST00000541488 PROSER2Q86WR7 435 aaPredicted RBP8.54□□□□□ -1.04
PRKDC-210ENST00000541488 HYAL3O43820 417 aaPredicted RBP8.53□□□□□ -1.04
PRKDC-210ENST00000541488 GTF2E1P29083 439 aaPredicted RBP8.53□□□□□ -1.04
PRKDC-210ENST00000541488 PSME1Q06323 249 aa8.53□□□□□ -1.04
PRKDC-210ENST00000541488 FHDC1Q9C0D6 1143 aaPredicted RBP8.53□□□□□ -1.04
PRKDC-210ENST00000541488 HRH3Q9Y5N1 445 aa8.53□□□□□ -1.04
PRKDC-210ENST00000541488 USP17L5A8MUK1 530 aa8.52□□□□□ -1.05
PRKDC-210ENST00000541488 COBLO75128 1261 aa8.52□□□□□ -1.05
PRKDC-210ENST00000541488 CSB-PGBD3P0DP91 1061 aa8.52□□□□□ -1.05
PRKDC-210ENST00000541488 C4orf17Q53FE4 359 aa8.52□□□□□ -1.05
PRKDC-210ENST00000541488 GNASQ5JWF2 1037 aa8.52□□□□□ -1.05
PRKDC-210ENST00000541488 TBC1D9Q6ZT07 1266 aa8.52□□□□□ -1.05
PRKDC-210ENST00000541488 PGBD3Q8N328 593 aa8.52□□□□□ -1.05
PRKDC-210ENST00000541488 INHAP05111 366 aa8.51□□□□□ -1.05
PRKDC-210ENST00000541488 GTF2IP78347 998 aa8.51□□□□□ -1.05
PRKDC-210ENST00000541488 EFHC2Q5JST6 749 aa8.51□□□□□ -1.05
PRKDC-210ENST00000541488 UCN2Q96RP3 112 aa8.51□□□□□ -1.05
PRKDC-210ENST00000541488 NOD1Q9Y239 953 aa8.51□□□□□ -1.05
PRKDC-210ENST00000541488 GLMNQ92990 594 aa8.5□□□□□ -1.05
PRKDC-210ENST00000541488 TMEM229AB2RXF0 380 aa8.49□□□□□ -1.05
PRKDC-210ENST00000541488 MSX1P28360 303 aa8.49□□□□□ -1.05
PRKDC-210ENST00000541488 PLA2G4AP47712 749 aa8.49□□□□□ -1.05
PRKDC-210ENST00000541488 MCTP1Q6DN14 999 aa8.49□□□□□ -1.05
PRKDC-210ENST00000541488 FCHSD1Q86WN1 690 aa8.49□□□□□ -1.05
PRKDC-210ENST00000541488 FNBP4Q8N3X1 1017 aaPredicted RBP8.49□□□□□ -1.05
PRKDC-210ENST00000541488 SERBP1Q8NC51 408 aaKnown RBP eCLIP8.49□□□□□ -1.05
PRKDC-210ENST00000541488 KLF15Q9UIH9 416 aa8.49□□□□□ -1.05
PRKDC-210ENST00000541488 PCDHGA11Q9Y5H2 935 aa8.49□□□□□ -1.05
PRKDC-210ENST00000541488 APBA3O96018 575 aa8.48□□□□□ -1.05
PRKDC-210ENST00000541488 USP17L3A6NCW0 530 aa8.47□□□□□ -1.05
PRKDC-210ENST00000541488 USP17L4A6NCW7 530 aa8.47□□□□□ -1.05
PRKDC-210ENST00000541488 ADH6P28332 368 aa8.47□□□□□ -1.05
PRKDC-210ENST00000541488 SMTNP53814 917 aa8.47□□□□□ -1.05
PRKDC-210ENST00000541488 USP17L2Q6R6M4 530 aa8.47□□□□□ -1.05
PRKDC-210ENST00000541488 USP17L1Q7RTZ2 530 aa8.47□□□□□ -1.05
PRKDC-210ENST00000541488 RHBDD1Q8TEB9 315 aa8.47□□□□□ -1.05
PRKDC-210ENST00000541488 AIDAQ96BJ3 306 aa8.47□□□□□ -1.05
PRKDC-210ENST00000541488 USP3Q9Y6I4 520 aa8.47□□□□□ -1.05
PRKDC-210ENST00000541488 PRRT3Q5FWE3 981 aa8.46□□□□□ -1.06
PRKDC-210ENST00000541488 PPARGC1BQ86YN6 1023 aaKnown RBP8.46□□□□□ -1.06
PRKDC-210ENST00000541488 NFATC2IPQ8NCF5 419 aa8.46□□□□□ -1.06
PRKDC-210ENST00000541488 KIAA1024Q9UPX6 916 aa8.46□□□□□ -1.06
PRKDC-210ENST00000541488 PARP3Q9Y6F1 533 aa8.46□□□□□ -1.06
PRKDC-210ENST00000541488 ATP9BO43861 1147 aa8.45□□□□□ -1.06
PRKDC-210ENST00000541488 TBCELQ5QJ74 424 aa8.45□□□□□ -1.06
PRKDC-210ENST00000541488 CALR3Q96L12 384 aaKnown RBP8.45□□□□□ -1.06
PRKDC-210ENST00000541488 TFIP11Q9UBB9 837 aaKnown RBP8.45□□□□□ -1.06
PRKDC-210ENST00000541488 A6NJY4 79 aa8.44□□□□□ -1.06
PRKDC-210ENST00000541488 ZNF358Q9NW07 568 aa8.44□□□□□ -1.06
PRKDC-210ENST00000541488 CABP1Q9NZU7 370 aa8.44□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 75.2 ms