RNA–Protein interactions for RNA: ENST00000541366.1

COPA-205, Transcript of coatomer protein complex subunit alpha, humanhuman

TSL 2

Gene COPA, Length 616 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPA-205ENST00000541366 USPL1Q5W0Q7 1092 aa16.31■□□□□ 0.2
COPA-205ENST00000541366 POLR3GLQ9BT43 218 aa16.3■□□□□ 0.2
COPA-205ENST00000541366 CCDC88AQ3V6T2 1871 aa16.29■□□□□ 0.2
COPA-205ENST00000541366 AFDNP55196 1824 aaKnown RBP16.29■□□□□ 0.2
COPA-205ENST00000541366 GLTPD2A6NH11 291 aa16.29■□□□□ 0.2
COPA-205ENST00000541366 VEGFAP15692 232 aaPredicted RBP16.29■□□□□ 0.2
COPA-205ENST00000541366 DNAJC10Q8IXB1 793 aa16.29■□□□□ 0.2
COPA-205ENST00000541366 ZPR1O75312 459 aa16.28■□□□□ 0.2
COPA-205ENST00000541366 LMNB1P20700 586 aa16.28■□□□□ 0.2
COPA-205ENST00000541366 NFIXQ14938 502 aa16.28■□□□□ 0.2
COPA-205ENST00000541366 AMOTQ4VCS5 1084 aa16.28■□□□□ 0.2
COPA-205ENST00000541366 POTECB2RU33 542 aa16.27■□□□□ 0.2
COPA-205ENST00000541366 C1orf141Q5JVX7 400 aa16.27■□□□□ 0.2
COPA-205ENST00000541366 SOS1Q07889 1333 aaPredicted RBP16.26■□□□□ 0.19
COPA-205ENST00000541366 NFKBIEO00221 500 aa16.26■□□□□ 0.19
COPA-205ENST00000541366 BCL2L12Q9HB09 334 aa16.26■□□□□ 0.19
COPA-205ENST00000541366 CARMIL3Q8ND23 1372 aa16.26■□□□□ 0.19
COPA-205ENST00000541366 TIAM2Q8IVF5 1701 aa16.25■□□□□ 0.19
COPA-205ENST00000541366 ZC3H4Q9UPT8 1303 aaKnown RBP16.25■□□□□ 0.19
COPA-205ENST00000541366 SERPINB2P05120 415 aa16.24■□□□□ 0.19
COPA-205ENST00000541366 SLC39A6Q13433 755 aa16.24■□□□□ 0.19
COPA-205ENST00000541366 SULT6B1Q6IMI4 303 aa16.24■□□□□ 0.19
COPA-205ENST00000541366 TTLL6Q8N841 843 aa16.24■□□□□ 0.19
COPA-205ENST00000541366 LGR6Q9HBX8 967 aa16.24■□□□□ 0.19
COPA-205ENST00000541366 ZNF219Q9P2Y4 722 aaPredicted RBP16.24■□□□□ 0.19
COPA-205ENST00000541366 NRXN2Q9P2S2 1712 aa16.24■□□□□ 0.19
COPA-205ENST00000541366 SCN11AQ9UI33 1791 aa16.23■□□□□ 0.19
COPA-205ENST00000541366 CYP19A1P11511 503 aaPredicted RBP16.23■□□□□ 0.19
COPA-205ENST00000541366 C2CD5Q86YS7 1000 aa16.23■□□□□ 0.19
COPA-205ENST00000541366 NARFQ9UHQ1 456 aa16.23■□□□□ 0.19
COPA-205ENST00000541366 ZBTB1Q9Y2K1 713 aa16.23■□□□□ 0.19
COPA-205ENST00000541366 DLEC1Q9Y238 1755 aa16.23■□□□□ 0.19
COPA-205ENST00000541366 POTEIP0CG38 1075 aa16.22■□□□□ 0.19
COPA-205ENST00000541366 POTEJP0CG39 1038 aa16.22■□□□□ 0.19
COPA-205ENST00000541366 MKRN1Q9UHC7 482 aaKnown RBP16.22■□□□□ 0.19
COPA-205ENST00000541366 COL15A1P39059 1388 aa16.22■□□□□ 0.19
COPA-205ENST00000541366 BICDL1Q6ZP65 573 aa16.21■□□□□ 0.19
COPA-205ENST00000541366 CCDC24Q8N4L8 307 aa16.21■□□□□ 0.19
COPA-205ENST00000541366 SLC52A2Q9HAB3 445 aa16.2■□□□□ 0.18
COPA-205ENST00000541366 H0YIN7 160 aa16.19■□□□□ 0.18
COPA-205ENST00000541366 PANK3Q9H999 370 aa16.19■□□□□ 0.18
COPA-205ENST00000541366 FOXN1O15353 648 aa16.18■□□□□ 0.18
COPA-205ENST00000541366 C21orf2O43822 256 aa16.18■□□□□ 0.18
COPA-205ENST00000541366 CANXP27824 592 aaKnown RBP16.18■□□□□ 0.18
COPA-205ENST00000541366 DPY19L2Q6NUT2 758 aa16.18■□□□□ 0.18
COPA-205ENST00000541366 ZNF622Q969S3 477 aaKnown RBP eCLIP16.18■□□□□ 0.18
COPA-205ENST00000541366 ANKRD31Q8N7Z5 1873 aa16.17■□□□□ 0.18
COPA-205ENST00000541366 RNMTO43148 476 aaKnown RBP16.17■□□□□ 0.18
COPA-205ENST00000541366 IL13P35225 146 aa16.17■□□□□ 0.18
COPA-205ENST00000541366 ERFEQ4G0M1 354 aa16.17■□□□□ 0.18
COPA-205ENST00000541366 AKAP4Q5JQC9 854 aa16.17■□□□□ 0.18
COPA-205ENST00000541366 DICER1Q9UPY3 1922 aaKnown RBP16.16■□□□□ 0.18
COPA-205ENST00000541366 DDNO94850 711 aaPredicted RBP16.16■□□□□ 0.18
COPA-205ENST00000541366 TBC1D9BQ66K14 1250 aa16.16■□□□□ 0.18
COPA-205ENST00000541366 CHADLQ6NUI6 762 aa16.16■□□□□ 0.18
COPA-205ENST00000541366 MORC1Q86VD1 984 aa16.16■□□□□ 0.18
COPA-205ENST00000541366 CREBZFQ9NS37 354 aa16.16■□□□□ 0.18
COPA-205ENST00000541366 VIRMAQ69YN4 1812 aaKnown RBP16.15■□□□□ 0.18
COPA-205ENST00000541366 COL11A2P13942 1736 aaPredicted RBP16.15■□□□□ 0.18
COPA-205ENST00000541366 FER1L6Q2WGJ9 1857 aa16.15■□□□□ 0.18
COPA-205ENST00000541366 HMOX1P09601 288 aa16.14■□□□□ 0.17
COPA-205ENST00000541366 MRC1P22897 1456 aa16.14■□□□□ 0.17
COPA-205ENST00000541366 EIF5P55010 431 aaKnown RBP16.13■□□□□ 0.17
COPA-205ENST00000541366 PRR5LQ6MZQ0 368 aa16.13■□□□□ 0.17
COPA-205ENST00000541366 TBC1D2BQ9UPU7 963 aa16.12■□□□□ 0.17
COPA-205ENST00000541366 ZNF330Q9Y3S2 320 aaPredicted RBP16.12■□□□□ 0.17
COPA-205ENST00000541366 SLX4Q8IY92 1834 aa16.12■□□□□ 0.17
COPA-205ENST00000541366 CNTNAP1P78357 1384 aa16.12■□□□□ 0.17
COPA-205ENST00000541366 MTHFSDQ2M296 383 aaKnown RBP16.11■□□□□ 0.17
COPA-205ENST00000541366 BRIP1Q9BX63 1249 aa16.11■□□□□ 0.17
COPA-205ENST00000541366 CACNA1SQ13698 1873 aa16.11■□□□□ 0.17
COPA-205ENST00000541366 PDE6BP35913 854 aa16.1■□□□□ 0.17
COPA-205ENST00000541366 VEGFBP49765 207 aa16.1■□□□□ 0.17
COPA-205ENST00000541366 VSIG10Q8N0Z9 540 aa16.1■□□□□ 0.17
COPA-205ENST00000541366 TAOK3Q9H2K8 898 aa16.1■□□□□ 0.17
COPA-205ENST00000541366 PASKQ96RG2 1323 aa16.1■□□□□ 0.17
COPA-205ENST00000541366 UBR2Q8IWV8 1755 aa16.1■□□□□ 0.17
COPA-205ENST00000541366 PRDM10Q9NQV6 1147 aa16.09■□□□□ 0.17
COPA-205ENST00000541366 PRPF40BQ6NWY9 871 aaKnown RBP16.08■□□□□ 0.16
COPA-205ENST00000541366 ZNF496Q96IT1 587 aaPredicted RBP16.08■□□□□ 0.16
COPA-205ENST00000541366 LTBP3Q9NS15 1303 aa16.08■□□□□ 0.16
COPA-205ENST00000541366 A0A087WZG4 1122 aa16.07■□□□□ 0.16
COPA-205ENST00000541366 STARD3NLO95772 234 aa16.07■□□□□ 0.16
COPA-205ENST00000541366 HSPA5P11021 654 aaKnown RBP16.07■□□□□ 0.16
COPA-205ENST00000541366 CTCFP49711 727 aaPredicted RBP16.07■□□□□ 0.16
COPA-205ENST00000541366 LBX1P52954 281 aa16.07■□□□□ 0.16
COPA-205ENST00000541366 TAF1DQ9H5J8 278 aaPredicted RBP16.07■□□□□ 0.16
COPA-205ENST00000541366 SCN7AQ01118 1682 aa16.07■□□□□ 0.16
COPA-205ENST00000541366 ITGBL1O95965 494 aaPredicted RBP16.06■□□□□ 0.16
COPA-205ENST00000541366 LDHDQ86WU2 507 aa16.06■□□□□ 0.16
COPA-205ENST00000541366 AIDAQ96BJ3 306 aa16.06■□□□□ 0.16
COPA-205ENST00000541366 ZNF541Q9H0D2 1346 aa16.05■□□□□ 0.16
COPA-205ENST00000541366 TMEM88BA6NKF7 163 aa16.05■□□□□ 0.16
COPA-205ENST00000541366 A1BGP04217 495 aa16.05■□□□□ 0.16
COPA-205ENST00000541366 SRGNP10124 158 aa16.05■□□□□ 0.16
COPA-205ENST00000541366 EAPPQ56P03 285 aaPredicted RBP16.05■□□□□ 0.16
COPA-205ENST00000541366 OLFM4Q6UX06 510 aa16.05■□□□□ 0.16
COPA-205ENST00000541366 TTC5Q8N0Z6 440 aa16.05■□□□□ 0.16
COPA-205ENST00000541366 CNBD1Q8NA66 436 aa16.05■□□□□ 0.16
COPA-205ENST00000541366 CNKSR1Q969H4 720 aa16.05■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms