RNA–Protein interactions for RNA: ENST00000536483.1

PRKDC-207, Transcript of protein kinase, DNA-activated, catalytic subunit, humanhuman

TSL 2

Gene PRKDC, Length 834 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDC-207ENST00000536483 SOS1Q07889 1333 aaPredicted RBP16.7■□□□□ 0.26
PRKDC-207ENST00000536483 ADAMTS7Q9UKP4 1686 aa16.69■□□□□ 0.26
PRKDC-207ENST00000536483 MRC1P22897 1456 aa16.68■□□□□ 0.26
PRKDC-207ENST00000536483 NARFQ9UHQ1 456 aa16.68■□□□□ 0.26
PRKDC-207ENST00000536483 ZBTB1Q9Y2K1 713 aa16.68■□□□□ 0.26
PRKDC-207ENST00000536483 ZEB1P37275 1124 aaPredicted RBP16.67■□□□□ 0.26
PRKDC-207ENST00000536483 APLP1P51693 650 aa16.67■□□□□ 0.26
PRKDC-207ENST00000536483 NFIXQ14938 502 aa16.67■□□□□ 0.26
PRKDC-207ENST00000536483 RNF181Q9P0P0 153 aa16.67■□□□□ 0.26
PRKDC-207ENST00000536483 NUDCQ9Y266 331 aa16.67■□□□□ 0.26
PRKDC-207ENST00000536483 ARFGEF1Q9Y6D6 1849 aa16.67■□□□□ 0.26
PRKDC-207ENST00000536483 COL15A1P39059 1388 aa16.66■□□□□ 0.26
PRKDC-207ENST00000536483 KCPQ6ZWJ8 1503 aa16.66■□□□□ 0.26
PRKDC-207ENST00000536483 CNGB1Q14028 1251 aaPredicted RBP16.66■□□□□ 0.26
PRKDC-207ENST00000536483 BCL2L12Q9HB09 334 aa16.66■□□□□ 0.26
PRKDC-207ENST00000536483 U2SURPO15042 1029 aaKnown RBP16.65■□□□□ 0.26
PRKDC-207ENST00000536483 CANXP27824 592 aaKnown RBP16.65■□□□□ 0.26
PRKDC-207ENST00000536483 VSIG10Q8N0Z9 540 aa16.65■□□□□ 0.26
PRKDC-207ENST00000536483 RSPH6AQ9H0K4 717 aa16.65■□□□□ 0.26
PRKDC-207ENST00000536483 SERPINB2P05120 415 aa16.64■□□□□ 0.25
PRKDC-207ENST00000536483 RALBP1Q15311 655 aa16.64■□□□□ 0.25
PRKDC-207ENST00000536483 GAS2L2Q8NHY3 880 aa16.64■□□□□ 0.25
PRKDC-207ENST00000536483 C16orf71Q8IYS4 520 aaPredicted RBP16.63■□□□□ 0.25
PRKDC-207ENST00000536483 TTC5Q8N0Z6 440 aa16.63■□□□□ 0.25
PRKDC-207ENST00000536483 RBM46Q8TBY0 533 aaKnown RBP16.63■□□□□ 0.25
PRKDC-207ENST00000536483 KDM2BQ8NHM5 1336 aa16.63■□□□□ 0.25
PRKDC-207ENST00000536483 VIRMAQ69YN4 1812 aaKnown RBP16.62■□□□□ 0.25
PRKDC-207ENST00000536483 RASSF7Q02833 373 aa16.62■□□□□ 0.25
PRKDC-207ENST00000536483 DNAJC5GQ8N7S2 189 aa16.62■□□□□ 0.25
PRKDC-207ENST00000536483 RRAGCQ9HB90 399 aa16.62■□□□□ 0.25
PRKDC-207ENST00000536483 STARD3NLO95772 234 aa16.61■□□□□ 0.25
PRKDC-207ENST00000536483 EIF5P55010 431 aaKnown RBP16.61■□□□□ 0.25
PRKDC-207ENST00000536483 BICDL1Q6ZP65 573 aa16.61■□□□□ 0.25
PRKDC-207ENST00000536483 IL17REQ8NFR9 667 aa16.61■□□□□ 0.25
PRKDC-207ENST00000536483 PHACTR3Q96KR7 559 aa16.61■□□□□ 0.25
PRKDC-207ENST00000536483 AFDNP55196 1824 aaKnown RBP16.61■□□□□ 0.25
PRKDC-207ENST00000536483 GNAT3A8MTJ3 354 aa16.6■□□□□ 0.25
PRKDC-207ENST00000536483 PRKAR2BP31323 418 aa16.6■□□□□ 0.25
PRKDC-207ENST00000536483 TEFQ10587 303 aa16.6■□□□□ 0.25
PRKDC-207ENST00000536483 DDX10Q13206 875 aaKnown RBP16.6■□□□□ 0.25
PRKDC-207ENST00000536483 ZNF496Q96IT1 587 aaPredicted RBP16.6■□□□□ 0.25
PRKDC-207ENST00000536483 CEMIPQ8WUJ3 1361 aa16.6■□□□□ 0.25
PRKDC-207ENST00000536483 U2AF1L5P0DN76 240 aaPredicted RBP16.59■□□□□ 0.25
PRKDC-207ENST00000536483 HTRA3P83110 453 aa16.59■□□□□ 0.25
PRKDC-207ENST00000536483 U2AF1Q01081 240 aaKnown RBP eCLIP16.59■□□□□ 0.25
PRKDC-207ENST00000536483 ZNF790Q6PG37 636 aa16.59■□□□□ 0.25
PRKDC-207ENST00000536483 C2CD5Q86YS7 1000 aa16.59■□□□□ 0.25
PRKDC-207ENST00000536483 TTLL6Q8N841 843 aa16.59■□□□□ 0.25
PRKDC-207ENST00000536483 CARMIL3Q8ND23 1372 aa16.59■□□□□ 0.25
PRKDC-207ENST00000536483 NRXN2Q9P2S2 1712 aa16.59■□□□□ 0.25
PRKDC-207ENST00000536483 UBR2Q8IWV8 1755 aa16.59■□□□□ 0.25
PRKDC-207ENST00000536483 A0A087WZG4 1122 aa16.58■□□□□ 0.24
PRKDC-207ENST00000536483 H0YIN7 160 aa16.58■□□□□ 0.24
PRKDC-207ENST00000536483 PRELPP51888 382 aa16.58■□□□□ 0.24
PRKDC-207ENST00000536483 FSTL1Q12841 308 aa16.58■□□□□ 0.24
PRKDC-207ENST00000536483 TBC1D9BQ66K14 1250 aa16.58■□□□□ 0.24
PRKDC-207ENST00000536483 ZNF330Q9Y3S2 320 aaPredicted RBP16.58■□□□□ 0.24
PRKDC-207ENST00000536483 HEG1Q9ULI3 1381 aa16.58■□□□□ 0.24
PRKDC-207ENST00000536483 SBF1O95248 1867 aa16.58■□□□□ 0.24
PRKDC-207ENST00000536483 HTATSF1O43719 755 aaKnown RBP16.57■□□□□ 0.24
PRKDC-207ENST00000536483 LMNB1P20700 586 aa16.57■□□□□ 0.24
PRKDC-207ENST00000536483 TBC1D2BQ9UPU7 963 aa16.57■□□□□ 0.24
PRKDC-207ENST00000536483 CCDC24Q8N4L8 307 aa16.56■□□□□ 0.24
PRKDC-207ENST00000536483 TEX13AQ9BXU3 409 aaPredicted RBP16.56■□□□□ 0.24
PRKDC-207ENST00000536483 ZC3H4Q9UPT8 1303 aaKnown RBP16.55■□□□□ 0.24
PRKDC-207ENST00000536483 A1BGP04217 495 aa16.55■□□□□ 0.24
PRKDC-207ENST00000536483 IL6STP40189 918 aaPredicted RBP16.55■□□□□ 0.24
PRKDC-207ENST00000536483 FMNL2Q96PY5 1086 aa16.55■□□□□ 0.24
PRKDC-207ENST00000536483 PLEKHF1Q96S99 279 aa16.55■□□□□ 0.24
PRKDC-207ENST00000536483 NFKBIEO00221 500 aa16.54■□□□□ 0.24
PRKDC-207ENST00000536483 KCNQ3O43525 872 aa16.54■□□□□ 0.24
PRKDC-207ENST00000536483 ZNF622Q969S3 477 aaKnown RBP eCLIP16.54■□□□□ 0.24
PRKDC-207ENST00000536483 WDR90Q96KV7 1748 aa16.53■□□□□ 0.24
PRKDC-207ENST00000536483 MYBBP1AQ9BQG0 1328 aaKnown RBP16.53■□□□□ 0.24
PRKDC-207ENST00000536483 GLTPD2A6NH11 291 aa16.53■□□□□ 0.24
PRKDC-207ENST00000536483 BTBD11A6QL63 1104 aa16.53■□□□□ 0.24
PRKDC-207ENST00000536483 PRR5LQ6MZQ0 368 aa16.53■□□□□ 0.24
PRKDC-207ENST00000536483 SMC1BQ8NDV3 1235 aa16.53■□□□□ 0.24
PRKDC-207ENST00000536483 KLRG1Q96E93 195 aa16.53■□□□□ 0.24
PRKDC-207ENST00000536483 BRIP1Q9BX63 1249 aa16.53■□□□□ 0.24
PRKDC-207ENST00000536483 PNNQ9H307 717 aaKnown RBP16.53■□□□□ 0.24
PRKDC-207ENST00000536483 DLEC1Q9Y238 1755 aa16.53■□□□□ 0.24
PRKDC-207ENST00000536483 PDE6BP35913 854 aa16.52■□□□□ 0.24
PRKDC-207ENST00000536483 NPM2Q86SE8 214 aaKnown RBP16.52■□□□□ 0.24
PRKDC-207ENST00000536483 ZNF219Q9P2Y4 722 aaPredicted RBP16.52■□□□□ 0.24
PRKDC-207ENST00000536483 TNRC6CQ9HCJ0 1690 aaKnown RBP16.52■□□□□ 0.23
PRKDC-207ENST00000536483 PCNTO95613 3336 aa16.52■□□□□ 0.23
PRKDC-207ENST00000536483 C21orf2O43822 256 aa16.51■□□□□ 0.23
PRKDC-207ENST00000536483 CAMTA2O94983 1202 aa16.51■□□□□ 0.23
PRKDC-207ENST00000536483 VEGFAP15692 232 aaPredicted RBP16.51■□□□□ 0.23
PRKDC-207ENST00000536483 SETDB2Q96T68 719 aa16.51■□□□□ 0.23
PRKDC-207ENST00000536483 PDZRN3Q9UPQ7 1066 aa16.51■□□□□ 0.23
PRKDC-207ENST00000536483 USP16Q9Y5T5 823 aa16.51■□□□□ 0.23
PRKDC-207ENST00000536483 SIPA1L3O60292 1781 aaPredicted RBP16.51■□□□□ 0.23
PRKDC-207ENST00000536483 PIP4K2AP48426 406 aaPredicted RBP16.5■□□□□ 0.23
PRKDC-207ENST00000536483 PRKRIP1Q9H875 184 aaPredicted RBP16.5■□□□□ 0.23
PRKDC-207ENST00000536483 PRAMEF22A3QJZ6 481 aa16.49■□□□□ 0.23
PRKDC-207ENST00000536483 NPHP1O15259 732 aa16.49■□□□□ 0.23
PRKDC-207ENST00000536483 DZIP3Q86Y13 1208 aaKnown RBP16.49■□□□□ 0.23
PRKDC-207ENST00000536483 ANKRD31Q8N7Z5 1873 aa16.49■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 83.8 ms