RNA–Protein interactions for RNA: ENST00000534705.5

USP48-215, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 566 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-215ENST00000534705 BANK1Q8NDB2 785 aa7.65□□□□□ -1.18
USP48-215ENST00000534705 DNAAF2Q9NVR5 837 aaKnown RBP7.65□□□□□ -1.18
USP48-215ENST00000534705 CEP126Q9P2H0 1117 aa7.65□□□□□ -1.18
USP48-215ENST00000534705 TLR1Q15399 786 aa7.64□□□□□ -1.19
USP48-215ENST00000534705 RSPO4Q2I0M5 234 aaPredicted RBP7.64□□□□□ -1.19
USP48-215ENST00000534705 CDCA7Q9BWT1 371 aaPredicted RBP7.64□□□□□ -1.19
USP48-215ENST00000534705 APBA3O96018 575 aa7.63□□□□□ -1.19
USP48-215ENST00000534705 PLA2G4AP47712 749 aa7.63□□□□□ -1.19
USP48-215ENST00000534705 PRRT3Q5FWE3 981 aa7.63□□□□□ -1.19
USP48-215ENST00000534705 SIRT1Q96EB6 747 aa7.63□□□□□ -1.19
USP48-215ENST00000534705 TRIM11Q96F44 468 aa7.63□□□□□ -1.19
USP48-215ENST00000534705 CCDC85AQ96PX6 553 aaPredicted RBP7.63□□□□□ -1.19
USP48-215ENST00000534705 APBB1O00213 710 aa7.62□□□□□ -1.19
USP48-215ENST00000534705 MAPTP10636 758 aaKnown RBP7.62□□□□□ -1.19
USP48-215ENST00000534705 TNP2Q05952 138 aa7.62□□□□□ -1.19
USP48-215ENST00000534705 NKAPLQ5M9Q1 402 aa7.62□□□□□ -1.19
USP48-215ENST00000534705 FCHSD1Q86WN1 690 aa7.62□□□□□ -1.19
USP48-215ENST00000534705 NIFKQ9BYG3 293 aaKnown RBP7.62□□□□□ -1.19
USP48-215ENST00000534705 ZFP64Q9NPA5 681 aa7.62□□□□□ -1.19
USP48-215ENST00000534705 KLF15Q9UIH9 416 aa7.62□□□□□ -1.19
USP48-215ENST00000534705 PRR12Q9ULL5 1215 aa7.62□□□□□ -1.19
USP48-215ENST00000534705 NDUFB9Q9Y6M9 179 aa7.62□□□□□ -1.19
USP48-215ENST00000534705 ALAS2P22557 587 aa7.61□□□□□ -1.19
USP48-215ENST00000534705 ARTNQ5T4W7 220 aa7.61□□□□□ -1.19
USP48-215ENST00000534705 ZNF468Q5VIY5 522 aaPredicted RBP7.61□□□□□ -1.19
USP48-215ENST00000534705 AIDAQ96BJ3 306 aa7.61□□□□□ -1.19
USP48-215ENST00000534705 ETNK1Q9HBU6 452 aa7.61□□□□□ -1.19
USP48-215ENST00000534705 KHNYNO15037 678 aaKnown RBP7.6□□□□□ -1.19
USP48-215ENST00000534705 NBPF11Q86T75 865 aa7.6□□□□□ -1.19
USP48-215ENST00000534705 A0A1W2PNR3 127 aa7.59□□□□□ -1.19
USP48-215ENST00000534705 DCDC2BA2VCK2 349 aa7.59□□□□□ -1.19
USP48-215ENST00000534705 CD33P20138 364 aa7.59□□□□□ -1.19
USP48-215ENST00000534705 NBPF1Q3BBV0 1214 aa7.59□□□□□ -1.19
USP48-215ENST00000534705 ARSJQ5FYB0 599 aaPredicted RBP7.59□□□□□ -1.19
USP48-215ENST00000534705 NACC1Q96RE7 527 aa7.59□□□□□ -1.19
USP48-215ENST00000534705 DOLKQ9UPQ8 538 aa7.59□□□□□ -1.19
USP48-215ENST00000534705 ELOA3CA0A087WX78 387 aaPredicted RBP7.58□□□□□ -1.2
USP48-215ENST00000534705 ELOA3DA6NLF2 546 aaPredicted RBP7.58□□□□□ -1.2
USP48-215ENST00000534705 DYRK3O43781 588 aa7.58□□□□□ -1.2
USP48-215ENST00000534705 FAM157BP0CG42 384 aa7.58□□□□□ -1.2
USP48-215ENST00000534705 TATP17735 454 aaPredicted RBP7.58□□□□□ -1.2
USP48-215ENST00000534705 ATP4AP20648 1035 aa7.58□□□□□ -1.2
USP48-215ENST00000534705 LAMC2Q13753 1193 aa7.58□□□□□ -1.2
USP48-215ENST00000534705 ELOA3BQ3SY89 546 aa7.58□□□□□ -1.2
USP48-215ENST00000534705 ELOA3Q8NG57 546 aa7.58□□□□□ -1.2
USP48-215ENST00000534705 TPSG1Q9NRR2 321 aa7.58□□□□□ -1.2
USP48-215ENST00000534705 GJA3Q9Y6H8 435 aa7.58□□□□□ -1.2
USP48-215ENST00000534705 PCBP4P57723 403 aaKnown RBP7.57□□□□□ -1.2
USP48-215ENST00000534705 FOXD4L6Q3SYB3 417 aaPredicted RBP7.57□□□□□ -1.2
USP48-215ENST00000534705 LCE3BQ5TA77 95 aa7.57□□□□□ -1.2
USP48-215ENST00000534705 FOXD4L3Q6VB84 417 aaPredicted RBP7.57□□□□□ -1.2
USP48-215ENST00000534705 MARK1Q9P0L2 795 aa7.57□□□□□ -1.2
USP48-215ENST00000534705 INHAP05111 366 aa7.56□□□□□ -1.2
USP48-215ENST00000534705 SLFNL1Q499Z3 407 aa7.56□□□□□ -1.2
USP48-215ENST00000534705 ZDHHC3Q9NYG2 299 aa7.56□□□□□ -1.2
USP48-215ENST00000534705 SMTNP53814 917 aa7.55□□□□□ -1.2
USP48-215ENST00000534705 GDF10P55107 478 aa7.55□□□□□ -1.2
USP48-215ENST00000534705 EIF4G2P78344 907 aaKnown RBP eCLIP7.55□□□□□ -1.2
USP48-215ENST00000534705 TRIM28Q13263 835 aaKnown RBP7.55□□□□□ -1.2
USP48-215ENST00000534705 SAMD5Q5TGI4 173 aa7.55□□□□□ -1.2
USP48-215ENST00000534705 PHTF2Q8N3S3 785 aa7.55□□□□□ -1.2
USP48-215ENST00000534705 MTMR14Q8NCE2 650 aa7.55□□□□□ -1.2
USP48-215ENST00000534705 KRTAP4-12Q9BQ66 201 aa7.55□□□□□ -1.2
USP48-215ENST00000534705 GPR37L1O60883 481 aa7.54□□□□□ -1.2
USP48-215ENST00000534705 ZIC5Q96T25 663 aa7.54□□□□□ -1.2
USP48-215ENST00000534705 HCN2Q9UL51 889 aa7.54□□□□□ -1.2
USP48-215ENST00000534705 STAU1O95793 577 aaKnown RBP7.53□□□□□ -1.2
USP48-215ENST00000534705 PRSS36Q5K4E3 855 aa7.53□□□□□ -1.2
USP48-215ENST00000534705 PRDM6Q9NQX0 595 aa7.53□□□□□ -1.2
USP48-215ENST00000534705 ADARB2-AS1A8MUL3 147 aa7.52□□□□□ -1.21
USP48-215ENST00000534705 CDK2AP1O14519 115 aa7.52□□□□□ -1.21
USP48-215ENST00000534705 SCNN1DP51172 638 aa7.52□□□□□ -1.21
USP48-215ENST00000534705 TSGA10IPQ3SY00 556 aa7.52□□□□□ -1.21
USP48-215ENST00000534705 OXLD1Q5BKU9 147 aa7.52□□□□□ -1.21
USP48-215ENST00000534705 BTBD11A6QL63 1104 aa7.51□□□□□ -1.21
USP48-215ENST00000534705 EFSO43281 561 aa7.51□□□□□ -1.21
USP48-215ENST00000534705 SIN3BO75182 1162 aa7.51□□□□□ -1.21
USP48-215ENST00000534705 H2AFB1P0C5Y9 115 aa7.51□□□□□ -1.21
USP48-215ENST00000534705 H2AFB2P0C5Z0 115 aa7.51□□□□□ -1.21
USP48-215ENST00000534705 MCM6Q14566 821 aa7.51□□□□□ -1.21
USP48-215ENST00000534705 BICDL1Q6ZP65 573 aa7.51□□□□□ -1.21
USP48-215ENST00000534705 SYT9Q86SS6 491 aa7.51□□□□□ -1.21
USP48-215ENST00000534705 SNRKQ9NRH2 765 aa7.51□□□□□ -1.21
USP48-215ENST00000534705 CHIC2Q9UKJ5 165 aa7.51□□□□□ -1.21
USP48-215ENST00000534705 C9orf172C9J069 976 aa7.5□□□□□ -1.21
USP48-215ENST00000534705 M0R082 166 aa7.5□□□□□ -1.21
USP48-215ENST00000534705 FLIIQ13045 1269 aa7.5□□□□□ -1.21
USP48-215ENST00000534705 LRP8Q14114 963 aa7.5□□□□□ -1.21
USP48-215ENST00000534705 MAP7D1Q3KQU3 841 aa7.5□□□□□ -1.21
USP48-215ENST00000534705 ZNF417Q8TAU3 575 aa7.5□□□□□ -1.21
USP48-215ENST00000534705 SLC4A9Q96Q91 983 aa7.5□□□□□ -1.21
USP48-215ENST00000534705 ZNF587Q96SQ5 575 aaPredicted RBP7.5□□□□□ -1.21
USP48-215ENST00000534705 MDFIQ99750 246 aa7.5□□□□□ -1.21
USP48-215ENST00000534705 PRM3Q9NNZ6 103 aa7.5□□□□□ -1.21
USP48-215ENST00000534705 MTFR1Q15390 333 aa7.49□□□□□ -1.21
USP48-215ENST00000534705 CABP1Q9NZU7 370 aa7.49□□□□□ -1.21
USP48-215ENST00000534705 A6NJY4 79 aa7.48□□□□□ -1.21
USP48-215ENST00000534705 ZNF295-AS1Q8N0V1 137 aa7.48□□□□□ -1.21
USP48-215ENST00000534705 TNFRSF25Q93038 417 aa7.48□□□□□ -1.21
USP48-215ENST00000534705 STRN4Q9NRL3 753 aa7.48□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 9.8 ms