RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-238	ENST00000534296	ANKMY2	Q8IV38	441 aa		5.58	□□□□□ -1.52
CD44-238	ENST00000534296	SLC9A9	Q8IVB4	645 aa		5.58	□□□□□ -1.52
CD44-238	ENST00000534296	ZNF837	Q96EG3	531 aa	Predicted RBP	5.58	□□□□□ -1.52
CD44-238	ENST00000534296	NEUROD4	Q9HD90	331 aa		5.58	□□□□□ -1.52
CD44-238	ENST00000534296	SFI1	A8K8P3	1242 aa		5.57	□□□□□ -1.52
CD44-238	ENST00000534296	ZBTB7B	O15156	539 aa	Predicted RBP	5.57	□□□□□ -1.52
CD44-238	ENST00000534296	PTK7	Q13308	1070 aa		5.57	□□□□□ -1.52
CD44-238	ENST00000534296	CRTC2	Q53ET0	693 aa	Predicted RBP	5.57	□□□□□ -1.52
CD44-238	ENST00000534296	KANK4	Q5T7N3	995 aa	Predicted RBP	5.57	□□□□□ -1.52
CD44-238	ENST00000534296	BICDL1	Q6ZP65	573 aa		5.57	□□□□□ -1.52
CD44-238	ENST00000534296	TNS4	Q8IZW8	715 aa		5.57	□□□□□ -1.52
CD44-238	ENST00000534296	GAS2L2	Q8NHY3	880 aa		5.57	□□□□□ -1.52
CD44-238	ENST00000534296	FAM200A	Q8TCP9	573 aa		5.57	□□□□□ -1.52
CD44-238	ENST00000534296	HINFP	Q9BQA5	517 aa		5.57	□□□□□ -1.52
CD44-238	ENST00000534296	IQSEC3	Q9UPP2	1182 aa	Predicted RBP	5.57	□□□□□ -1.52
CD44-238	ENST00000534296	PPP1R12B	O60237	982 aa	Predicted RBP	5.56	□□□□□ -1.52
CD44-238	ENST00000534296	FOXK2	Q01167	660 aa		5.56	□□□□□ -1.52
CD44-238	ENST00000534296	DPYD	Q12882	1025 aa		5.56	□□□□□ -1.52
CD44-238	ENST00000534296	TEAD4	Q15561	434 aa		5.56	□□□□□ -1.52
CD44-238	ENST00000534296	TSEN2	Q8NCE0	465 aa	Known RBP	5.56	□□□□□ -1.52
CD44-238	ENST00000534296	GTPBP3	Q969Y2	492 aa	Known RBP	5.56	□□□□□ -1.52
CD44-238	ENST00000534296	PBXIP1	Q96AQ6	731 aa		5.56	□□□□□ -1.52
CD44-238	ENST00000534296	COL25A1	Q9BXS0	654 aa	Predicted RBP	5.56	□□□□□ -1.52
CD44-238	ENST00000534296	CRISPLD1	Q9H336	500 aa		5.56	□□□□□ -1.52
CD44-238	ENST00000534296	RUBCNL	Q9H714	662 aa		5.56	□□□□□ -1.52
CD44-238	ENST00000534296	GPC6	Q9Y625	555 aa	Predicted RBP	5.56	□□□□□ -1.52
CD44-238	ENST00000534296	ARID3C	A6NKF2	412 aa		5.55	□□□□□ -1.52
CD44-238	ENST00000534296	NOS2	P35228	1153 aa		5.55	□□□□□ -1.52
CD44-238	ENST00000534296	EPHA4	P54764	986 aa		5.55	□□□□□ -1.52
CD44-238	ENST00000534296	DBN1	Q16643	649 aa		5.55	□□□□□ -1.52
CD44-238	ENST00000534296	HIF1A	Q16665	826 aa		5.55	□□□□□ -1.52
CD44-238	ENST00000534296	NLRP8	Q86W28	1048 aa		5.55	□□□□□ -1.52
CD44-238	ENST00000534296	ZSCAN1	Q8NBB4	408 aa		5.55	□□□□□ -1.52
CD44-238	ENST00000534296	L3MBTL2	Q969R5	705 aa		5.55	□□□□□ -1.52
CD44-238	ENST00000534296	VTI1A	Q96AJ9	217 aa		5.55	□□□□□ -1.52
CD44-238	ENST00000534296	CNTNAP3B	Q96NU0	1288 aa		5.55	□□□□□ -1.52
CD44-238	ENST00000534296	CNTNAP3	Q9BZ76	1288 aa		5.55	□□□□□ -1.52
CD44-238	ENST00000534296	TSPAN10	Q9H1Z9	355 aa	Predicted RBP	5.55	□□□□□ -1.52
CD44-238	ENST00000534296	MBIP	Q9NS73	344 aa		5.55	□□□□□ -1.52
CD44-238	ENST00000534296	NOVA2	Q9UNW9	492 aa	Known RBP	5.55	□□□□□ -1.52
CD44-238	ENST00000534296	MX2	P20592	715 aa		5.54	□□□□□ -1.52
CD44-238	ENST00000534296	RHPN1	Q8TCX5	695 aa		5.54	□□□□□ -1.52
CD44-238	ENST00000534296	SCG3	Q8WXD2	468 aa	Known RBP	5.54	□□□□□ -1.52
CD44-238	ENST00000534296	CFHR5	Q9BXR6	569 aa		5.54	□□□□□ -1.52
CD44-238	ENST00000534296	UTP3	Q9NQZ2	479 aa	Known RBP eCLIP	5.54	□□□□□ -1.52	5e-38	■■■■■ 698.7
CD44-238	ENST00000534296	CUEDC1	Q9NWM3	386 aa	Predicted RBP	5.54	□□□□□ -1.52
CD44-238	ENST00000534296	ANKIB1	Q9P2G1	1089 aa		5.54	□□□□□ -1.52
CD44-238	ENST00000534296	STK17A	Q9UEE5	414 aa		5.54	□□□□□ -1.52
CD44-238	ENST00000534296	ATXN7L1	Q9ULK2	861 aa	Predicted RBP	5.54	□□□□□ -1.52
CD44-238	ENST00000534296	ATP4A	P20648	1035 aa		5.53	□□□□□ -1.52
CD44-238	ENST00000534296	IGFBP4	P22692	258 aa		5.53	□□□□□ -1.52
CD44-238	ENST00000534296	MAP2K3	P46734	347 aa		5.53	□□□□□ -1.52
CD44-238	ENST00000534296	HIRA	P54198	1017 aa	Predicted RBP	5.53	□□□□□ -1.52
CD44-238	ENST00000534296	MAP3K10	Q02779	954 aa		5.53	□□□□□ -1.52
CD44-238	ENST00000534296	SRSF11	Q05519	484 aa	Known RBP	5.53	□□□□□ -1.52
CD44-238	ENST00000534296	ELOA	Q14241	798 aa	Known RBP	5.53	□□□□□ -1.52
CD44-238	ENST00000534296	SWI5	Q1ZZU3	235 aa		5.53	□□□□□ -1.52
CD44-238	ENST00000534296	CDCA8	Q53HL2	280 aa		5.53	□□□□□ -1.52
CD44-238	ENST00000534296	TBCEL	Q5QJ74	424 aa		5.53	□□□□□ -1.52
CD44-238	ENST00000534296	STAG2	Q8N3U4	1231 aa		5.53	□□□□□ -1.52
CD44-238	ENST00000534296	CCDC82	Q8N4S0	544 aa		5.53	□□□□□ -1.52
CD44-238	ENST00000534296	CHMP7	Q8WUX9	453 aa	Predicted RBP	5.53	□□□□□ -1.52
CD44-238	ENST00000534296	PARP3	Q9Y6F1	533 aa		5.53	□□□□□ -1.52
CD44-238	ENST00000534296	USP3	Q9Y6I4	520 aa		5.53	□□□□□ -1.52
CD44-238	ENST00000534296	TRBV21OR9-2	A0A075B6F4	123 aa	Predicted RBP	5.52	□□□□□ -1.53
CD44-238	ENST00000534296		A0A1W2PNR3	127 aa		5.52	□□□□□ -1.53
CD44-238	ENST00000534296	GPR25	O00155	361 aa		5.52	□□□□□ -1.53
CD44-238	ENST00000534296	EML1	O00423	815 aa		5.52	□□□□□ -1.53
CD44-238	ENST00000534296	ATXN7	O15265	892 aa	Predicted RBP	5.52	□□□□□ -1.53
CD44-238	ENST00000534296	PPP1R15A	O75807	674 aa	Predicted RBP	5.52	□□□□□ -1.53
CD44-238	ENST00000534296	ATG7	O95352	703 aa		5.52	□□□□□ -1.53
CD44-238	ENST00000534296	C1orf53	Q5VUE5	145 aa		5.52	□□□□□ -1.53
CD44-238	ENST00000534296	GPR161	Q8N6U8	529 aa	Known RBP	5.52	□□□□□ -1.53
CD44-238	ENST00000534296	ZDHHC1	Q8WTX9	485 aa		5.52	□□□□□ -1.53
CD44-238	ENST00000534296	PCDHGC4	Q9Y5F7	938 aa		5.52	□□□□□ -1.53
CD44-238	ENST00000534296	ATAD2	Q6PL18	1390 aa		5.52	□□□□□ -1.53
CD44-238	ENST00000534296	ACIN1	Q9UKV3	1341 aa	Known RBP	5.51	□□□□□ -1.53
CD44-238	ENST00000534296	FOXO3	O43524	673 aa		5.51	□□□□□ -1.53
CD44-238	ENST00000534296	DKK1	O94907	266 aa		5.51	□□□□□ -1.53
CD44-238	ENST00000534296	TXLNA	P40222	546 aa		5.51	□□□□□ -1.53
CD44-238	ENST00000534296	LCE2C	Q5TA81	110 aa		5.51	□□□□□ -1.53
CD44-238	ENST00000534296	ZNF295-AS1	Q8N0V1	137 aa		5.51	□□□□□ -1.53
CD44-238	ENST00000534296	SVOP	Q8N4V2	548 aa		5.51	□□□□□ -1.53
CD44-238	ENST00000534296	ENAM	Q9NRM1	1142 aa		5.51	□□□□□ -1.53
CD44-238	ENST00000534296	ADAMTS2	O95450	1211 aa		5.5	□□□□□ -1.53
CD44-238	ENST00000534296	FAM157B	P0CG42	384 aa		5.5	□□□□□ -1.53
CD44-238	ENST00000534296	BMP4	P12644	408 aa		5.5	□□□□□ -1.53
CD44-238	ENST00000534296	FGFR3	P22607	806 aa		5.5	□□□□□ -1.53
CD44-238	ENST00000534296	RNFT1	Q5M7Z0	435 aa		5.5	□□□□□ -1.53
CD44-238	ENST00000534296	SAMD5	Q5TGI4	173 aa		5.5	□□□□□ -1.53
CD44-238	ENST00000534296	ABHD17A	Q96GS6	310 aa		5.5	□□□□□ -1.53
CD44-238	ENST00000534296	ARX	Q96QS3	562 aa		5.5	□□□□□ -1.53
CD44-238	ENST00000534296	ZIC5	Q96T25	663 aa		5.5	□□□□□ -1.53
CD44-238	ENST00000534296	C2orf49	Q9BVC5	232 aa	Predicted RBP	5.5	□□□□□ -1.53
CD44-238	ENST00000534296	PHACTR1	Q9C0D0	580 aa		5.5	□□□□□ -1.53
CD44-238	ENST00000534296	KHNYN	O15037	678 aa	Known RBP	5.49	□□□□□ -1.53
CD44-238	ENST00000534296	SLURP2	P0DP57	97 aa		5.49	□□□□□ -1.53
CD44-238	ENST00000534296	NEUROD1	Q13562	356 aa		5.49	□□□□□ -1.53
CD44-238	ENST00000534296	LAMC2	Q13753	1193 aa		5.49	□□□□□ -1.53
CD44-238	ENST00000534296	GAS6	Q14393	721 aa		5.49	□□□□□ -1.53

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