RNA–Protein interactions for RNA: ENST00000533222.5

CD44-236, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 581 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-236ENST00000533222 SNRPBP14678 240 aaKnown RBP7.68□□□□□ -1.18
CD44-236ENST00000533222 BCCIPQ9P287 314 aaKnown RBP eCLIP7.68□□□□□ -1.18
CD44-236ENST00000533222 PARP3Q9Y6F1 533 aa7.68□□□□□ -1.18
CD44-236ENST00000533222 WEE1P30291 646 aa7.67□□□□□ -1.18
CD44-236ENST00000533222 GPC1P35052 558 aa7.67□□□□□ -1.18
CD44-236ENST00000533222 PHKA2P46019 1235 aa7.67□□□□□ -1.18
CD44-236ENST00000533222 POU4F2Q12837 409 aa7.67□□□□□ -1.18
CD44-236ENST00000533222 C4orf17Q53FE4 359 aa7.67□□□□□ -1.18
CD44-236ENST00000533222 PHLDB3Q6NSJ2 640 aa7.67□□□□□ -1.18
CD44-236ENST00000533222 TMEM214Q6NUQ4 689 aaKnown RBP7.67□□□□□ -1.18
CD44-236ENST00000533222 PCGF6Q9BYE7 350 aa7.67□□□□□ -1.18
CD44-236ENST00000533222 ATP2B4P23634 1241 aa7.66□□□□□ -1.18
CD44-236ENST00000533222 PLA2G4AP47712 749 aa7.66□□□□□ -1.18
CD44-236ENST00000533222 FKBP5Q13451 457 aaPredicted RBP7.66□□□□□ -1.18
CD44-236ENST00000533222 CAPN12Q6ZSI9 719 aa7.66□□□□□ -1.18
CD44-236ENST00000533222 LYSMD3Q7Z3D4 306 aa7.66□□□□□ -1.18
CD44-236ENST00000533222 CHMP7Q8WUX9 453 aaPredicted RBP7.66□□□□□ -1.18
CD44-236ENST00000533222 TRIM47Q96LD4 638 aa7.66□□□□□ -1.18
CD44-236ENST00000533222 MKNK1Q9BUB5 465 aa7.66□□□□□ -1.18
CD44-236ENST00000533222 CDK2AP1O14519 115 aa7.65□□□□□ -1.18
CD44-236ENST00000533222 PPP1R12BO60237 982 aaPredicted RBP7.65□□□□□ -1.18
CD44-236ENST00000533222 MAN1A2O60476 641 aa7.65□□□□□ -1.18
CD44-236ENST00000533222 HSP90B1P14625 803 aaKnown RBP7.65□□□□□ -1.18
CD44-236ENST00000533222 RHBDD1Q8TEB9 315 aa7.65□□□□□ -1.18
CD44-236ENST00000533222 CABP1Q9NZU7 370 aa7.65□□□□□ -1.18
CD44-236ENST00000533222 CXXC1Q9P0U4 656 aaPredicted RBP7.65□□□□□ -1.18
CD44-236ENST00000533222 ATAD2Q6PL18 1390 aa7.64□□□□□ -1.19
CD44-236ENST00000533222 AAMPQ13685 434 aa7.64□□□□□ -1.19
CD44-236ENST00000533222 NBPF10Q6P3W6 841 aaKnown RBP7.64□□□□□ -1.19
CD44-236ENST00000533222 NBPF15Q8N660 670 aa7.64□□□□□ -1.19
CD44-236ENST00000533222 SENP3-EIF4A1A0A087X0R7 540 aa7.63□□□□□ -1.19
CD44-236ENST00000533222 SPATA31C2B4DYI2 1134 aa7.63□□□□□ -1.19
CD44-236ENST00000533222 EML1O00423 815 aa7.63□□□□□ -1.19
CD44-236ENST00000533222 IGFBP4P22692 258 aa7.63□□□□□ -1.19
CD44-236ENST00000533222 SSFA2P28290 1259 aa7.63□□□□□ -1.19
CD44-236ENST00000533222 TXLNAP40222 546 aa7.63□□□□□ -1.19
CD44-236ENST00000533222 PSMA6P60900 246 aaKnown RBP7.63□□□□□ -1.19
CD44-236ENST00000533222 TRIM26Q12899 539 aaPredicted RBP7.63□□□□□ -1.19
CD44-236ENST00000533222 GNASQ5JWF2 1037 aa7.63□□□□□ -1.19
CD44-236ENST00000533222 TAS1R3Q7RTX0 852 aa7.63□□□□□ -1.19
CD44-236ENST00000533222 KLRG1Q96E93 195 aa7.63□□□□□ -1.19
CD44-236ENST00000533222 TRAIPQ9BWF2 469 aa7.63□□□□□ -1.19
CD44-236ENST00000533222 C11orf95C9JLR9 678 aaPredicted RBP7.62□□□□□ -1.19
CD44-236ENST00000533222 YTHDC1Q96MU7 727 aaKnown RBP7.62□□□□□ -1.19
CD44-236ENST00000533222 C2orf49Q9BVC5 232 aaPredicted RBP7.62□□□□□ -1.19
CD44-236ENST00000533222 NIFKQ9BYG3 293 aaKnown RBP7.62□□□□□ -1.19
CD44-236ENST00000533222 SENP2Q9HC62 589 aa7.62□□□□□ -1.19
CD44-236ENST00000533222 NOS2P35228 1153 aa7.61□□□□□ -1.19
CD44-236ENST00000533222 TEAD4Q15561 434 aa7.61□□□□□ -1.19
CD44-236ENST00000533222 ZNF800Q2TB10 664 aaPredicted RBP eCLIP7.61□□□□□ -1.19
CD44-236ENST00000533222 L3MBTL2Q969R5 705 aa7.61□□□□□ -1.19
CD44-236ENST00000533222 KIFC2Q96AC6 838 aa7.61□□□□□ -1.19
CD44-236ENST00000533222 NGLY1Q96IV0 654 aa7.61□□□□□ -1.19
CD44-236ENST00000533222 SEPT3Q9UH03 358 aa7.61□□□□□ -1.19
CD44-236ENST00000533222 ZNF232Q9UNY5 417 aa7.61□□□□□ -1.19
CD44-236ENST00000533222 HCN4Q9Y3Q4 1203 aa7.61□□□□□ -1.19
CD44-236ENST00000533222 SERTM1A2A2V5 107 aa7.6□□□□□ -1.19
CD44-236ENST00000533222 ATP4AP20648 1035 aa7.6□□□□□ -1.19
CD44-236ENST00000533222 GTF2E1P29083 439 aaPredicted RBP7.6□□□□□ -1.19
CD44-236ENST00000533222 PTSQ03393 145 aa7.6□□□□□ -1.19
CD44-236ENST00000533222 POTEAQ6S8J7 498 aa7.6□□□□□ -1.19
CD44-236ENST00000533222 FANCIQ9NVI1 1328 aa7.59□□□□□ -1.19
CD44-236ENST00000533222 FOXO3O43524 673 aa7.59□□□□□ -1.19
CD44-236ENST00000533222 AIDAQ96BJ3 306 aa7.59□□□□□ -1.19
CD44-236ENST00000533222 GPAMQ9HCL2 828 aa7.59□□□□□ -1.19
CD44-236ENST00000533222 TIMMDC1Q9NPL8 285 aa7.59□□□□□ -1.19
CD44-236ENST00000533222 NAA30Q147X3 362 aaPredicted RBP7.58□□□□□ -1.2
CD44-236ENST00000533222 PHACTR1Q9C0D0 580 aa7.58□□□□□ -1.2
CD44-236ENST00000533222 SAP130Q9H0E3 1048 aa7.58□□□□□ -1.2
CD44-236ENST00000533222 QTRT2Q9H974 415 aaKnown RBP7.58□□□□□ -1.2
CD44-236ENST00000533222 CUEDC1Q9NWM3 386 aaPredicted RBP7.58□□□□□ -1.2
CD44-236ENST00000533222 SLC35F4A4IF30 521 aa7.57□□□□□ -1.2
CD44-236ENST00000533222 MSX1P28360 303 aa7.57□□□□□ -1.2
CD44-236ENST00000533222 ALDH16A1Q8IZ83 802 aa7.57□□□□□ -1.2
CD44-236ENST00000533222 STAG2Q8N3U4 1231 aa7.57□□□□□ -1.2
CD44-236ENST00000533222 GAS2L1Q99501 681 aaPredicted RBP7.57□□□□□ -1.2
CD44-236ENST00000533222 THBS1P07996 1170 aa7.56□□□□□ -1.2
CD44-236ENST00000533222 CDK11BP21127 795 aaKnown RBP7.56□□□□□ -1.2
CD44-236ENST00000533222 SERPINB4P48594 390 aa7.56□□□□□ -1.2
CD44-236ENST00000533222 VEGFBP49765 207 aa7.56□□□□□ -1.2
CD44-236ENST00000533222 HIRAP54198 1017 aaPredicted RBP7.56□□□□□ -1.2
CD44-236ENST00000533222 AEBP1Q8IUX7 1158 aa7.56□□□□□ -1.2
CD44-236ENST00000533222 CCDC155Q8N6L0 562 aa7.56□□□□□ -1.2
CD44-236ENST00000533222 C1orf216Q8TAB5 229 aa7.56□□□□□ -1.2
CD44-236ENST00000533222 RUBCNLQ9H714 662 aa7.56□□□□□ -1.2
CD44-236ENST00000533222 LRFN2Q9ULH4 789 aa7.56□□□□□ -1.2
CD44-236ENST00000533222 A0A1B0GTH6 734 aa7.55□□□□□ -1.2
CD44-236ENST00000533222 BRD1O95696 1058 aa7.55□□□□□ -1.2
CD44-236ENST00000533222 ZNF211Q13398 564 aaPredicted RBP7.55□□□□□ -1.2
CD44-236ENST00000533222 MTMR3Q13615 1198 aa7.55□□□□□ -1.2
CD44-236ENST00000533222 WDR44Q5JSH3 913 aa7.55□□□□□ -1.2
CD44-236ENST00000533222 C7orf43Q8WVR3 580 aa7.55□□□□□ -1.2
CD44-236ENST00000533222 VTI1AQ96AJ9 217 aa7.55□□□□□ -1.2
CD44-236ENST00000533222 CHMP3Q9Y3E7 222 aa7.55□□□□□ -1.2
CD44-236ENST00000533222 NBPF1Q3BBV0 1214 aa7.54□□□□□ -1.2
CD44-236ENST00000533222 FAM26DQ5JW98 314 aa7.54□□□□□ -1.2
CD44-236ENST00000533222 COX20Q5RI15 118 aa7.54□□□□□ -1.2
CD44-236ENST00000533222 ZNF787Q6DD87 383 aa7.54□□□□□ -1.2
CD44-236ENST00000533222 TXNDC2Q86VQ3 553 aa7.54□□□□□ -1.2
CD44-236ENST00000533222 HSH2DQ96JZ2 352 aa7.54□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms