RNA–Protein interactions for RNA: ENST00000526669.6

CD44-224, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5 BASIC

Gene CD44, Length 870 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-224ENST00000526669 USP16Q9Y5T5 823 aa17.74■□□□□ 0.43
CD44-224ENST00000526669 TWISTNBQ3B726 338 aaPredicted RBP17.73■□□□□ 0.43
CD44-224ENST00000526669 C4AP0C0L4 1744 aa17.72■□□□□ 0.43
CD44-224ENST00000526669 TCERG1O14776 1098 aaKnown RBP17.72■□□□□ 0.43
CD44-224ENST00000526669 PIP4K2AP48426 406 aaPredicted RBP17.72■□□□□ 0.43
CD44-224ENST00000526669 VSIG10Q8N0Z9 540 aa17.72■□□□□ 0.43
CD44-224ENST00000526669 SLC27A3Q5K4L6 730 aa17.71■□□□□ 0.43
CD44-224ENST00000526669 QSER1Q2KHR3 1735 aa17.71■□□□□ 0.43
CD44-224ENST00000526669 HDGFL1Q5TGJ6 251 aa17.7■□□□□ 0.42
CD44-224ENST00000526669 VAMP4O75379 141 aa17.69■□□□□ 0.42
CD44-224ENST00000526669 ANXA1P04083 346 aa17.69■□□□□ 0.42
CD44-224ENST00000526669 A1BGP04217 495 aa17.69■□□□□ 0.42
CD44-224ENST00000526669 CYP19A1P11511 503 aaPredicted RBP17.69■□□□□ 0.42
CD44-224ENST00000526669 TEX13AQ9BXU3 409 aaPredicted RBP17.69■□□□□ 0.42
CD44-224ENST00000526669 NUP98P52948 1817 aa17.69■□□□□ 0.42
CD44-224ENST00000526669 HOXB7P09629 217 aa17.68■□□□□ 0.42
CD44-224ENST00000526669 CRKLP46109 303 aaKnown RBP17.68■□□□□ 0.42
CD44-224ENST00000526669 ZBTB1Q9Y2K1 713 aa17.68■□□□□ 0.42
CD44-224ENST00000526669 BCORQ6W2J9 1755 aa17.67■□□□□ 0.42
CD44-224ENST00000526669 STARD3NLO95772 234 aa17.67■□□□□ 0.42
CD44-224ENST00000526669 CANXP27824 592 aaKnown RBP17.67■□□□□ 0.42
CD44-224ENST00000526669 ZNF827Q17R98 1081 aa17.67■□□□□ 0.42
CD44-224ENST00000526669 SMIM5Q71RC9 77 aa17.67■□□□□ 0.42
CD44-224ENST00000526669 ARFGEF2Q9Y6D5 1785 aa17.66■□□□□ 0.42
CD44-224ENST00000526669 MYL6BP14649 208 aa17.66■□□□□ 0.42
CD44-224ENST00000526669 PROSER3Q2NL68 480 aa17.66■□□□□ 0.42
CD44-224ENST00000526669 AK7Q96M32 723 aa17.66■□□□□ 0.42
CD44-224ENST00000526669 ANO8Q9HCE9 1232 aaPredicted RBP17.66■□□□□ 0.42
CD44-224ENST00000526669 CCDC87Q9NVE4 849 aa17.66■□□□□ 0.42
CD44-224ENST00000526669 CHPF2Q9P2E5 772 aa17.66■□□□□ 0.42
CD44-224ENST00000526669 ZNF330Q9Y3S2 320 aaPredicted RBP17.66■□□□□ 0.42
CD44-224ENST00000526669 CNTNAP4Q9C0A0 1308 aa17.66■□□□□ 0.42
CD44-224ENST00000526669 AFDNP55196 1824 aaKnown RBP17.65■□□□□ 0.42
CD44-224ENST00000526669 INTS5Q6P9B9 1019 aaKnown RBP17.65■□□□□ 0.42
CD44-224ENST00000526669 BCL2L13Q9BXK5 485 aa17.65■□□□□ 0.42
CD44-224ENST00000526669 ANKRD36CQ5JPF3 1778 aa17.64■□□□□ 0.41
CD44-224ENST00000526669 NBPF26B4DH59 902 aa17.64■□□□□ 0.41
CD44-224ENST00000526669 GNPATO15228 680 aa17.64■□□□□ 0.41
CD44-224ENST00000526669 NBPF14Q5TI25 921 aa17.64■□□□□ 0.41
CD44-224ENST00000526669 CCDC30Q5VVM6 783 aa17.64■□□□□ 0.41
CD44-224ENST00000526669 NBPF10Q6P3W6 841 aaKnown RBP17.64■□□□□ 0.41
CD44-224ENST00000526669 NBPF15Q8N660 670 aa17.64■□□□□ 0.41
CD44-224ENST00000526669 SOS1Q07889 1333 aaPredicted RBP17.64■□□□□ 0.41
CD44-224ENST00000526669 PHF14O94880 888 aa17.63■□□□□ 0.41
CD44-224ENST00000526669 AMIGO3Q86WK7 504 aa17.63■□□□□ 0.41
CD44-224ENST00000526669 SCN7AQ01118 1682 aa17.63■□□□□ 0.41
CD44-224ENST00000526669 PDIA6Q15084 440 aa17.62■□□□□ 0.41
CD44-224ENST00000526669 RC3H1Q5TC82 1133 aaKnown RBP17.62■□□□□ 0.41
CD44-224ENST00000526669 SSH1Q8WYL5 1049 aa17.62■□□□□ 0.41
CD44-224ENST00000526669 AKT1S1Q96B36 256 aa17.62■□□□□ 0.41
CD44-224ENST00000526669 STK31Q9BXU1 1019 aa17.62■□□□□ 0.41
CD44-224ENST00000526669 STK32BQ9NY57 414 aa17.62■□□□□ 0.41
CD44-224ENST00000526669 CT47B1P0C2W7 299 aaPredicted RBP17.61■□□□□ 0.41
CD44-224ENST00000526669 DDX21Q9NR30 783 aaKnown RBP eCLIP17.61■□□□□ 0.41
CD44-224ENST00000526669 COL15A1P39059 1388 aa17.61■□□□□ 0.41
CD44-224ENST00000526669 RPS6KA4O75676 772 aa17.6■□□□□ 0.41
CD44-224ENST00000526669 RARSP54136 660 aaKnown RBP17.6■□□□□ 0.41
CD44-224ENST00000526669 AIMP1Q12904 312 aaKnown RBP17.6■□□□□ 0.41
CD44-224ENST00000526669 G2E3Q7L622 706 aa17.6■□□□□ 0.41
CD44-224ENST00000526669 ARXQ96QS3 562 aa17.6■□□□□ 0.41
CD44-224ENST00000526669 PHAXQ9H814 394 aaKnown RBP17.6■□□□□ 0.41
CD44-224ENST00000526669 SMC4Q9NTJ3 1288 aa17.6■□□□□ 0.41
CD44-224ENST00000526669 TFCP2L1Q9NZI6 479 aa17.6■□□□□ 0.41
CD44-224ENST00000526669 DBF4Q9UBU7 674 aaPredicted RBP17.6■□□□□ 0.41
CD44-224ENST00000526669 RTCBQ9Y3I0 505 aaKnown RBP17.6■□□□□ 0.41
CD44-224ENST00000526669 ERBB4Q15303 1308 aa17.6■□□□□ 0.41
CD44-224ENST00000526669 CASZ1Q86V15 1759 aa17.59■□□□□ 0.41
CD44-224ENST00000526669 SOCS7O14512 581 aa17.59■□□□□ 0.41
CD44-224ENST00000526669 SLC4A2P04920 1241 aa17.59■□□□□ 0.41
CD44-224ENST00000526669 SLC15A2Q16348 729 aa17.59■□□□□ 0.41
CD44-224ENST00000526669 MRPL50Q8N5N7 158 aaKnown RBP17.59■□□□□ 0.41
CD44-224ENST00000526669 BCAR3O75815 825 aa17.58■□□□□ 0.4
CD44-224ENST00000526669 IL6STP40189 918 aaPredicted RBP17.58■□□□□ 0.4
CD44-224ENST00000526669 EIF5P55010 431 aaKnown RBP17.58■□□□□ 0.4
CD44-224ENST00000526669 XAGE3Q8WTP9 111 aa17.58■□□□□ 0.4
CD44-224ENST00000526669 N4BP2Q86UW6 1770 aaPredicted RBP17.58■□□□□ 0.4
CD44-224ENST00000526669 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP17.57■□□□□ 0.4
CD44-224ENST00000526669 ALDH1L2Q3SY69 923 aa17.57■□□□□ 0.4
CD44-224ENST00000526669 TTLL7Q6ZT98 887 aa17.57■□□□□ 0.4
CD44-224ENST00000526669 LRP10Q7Z4F1 713 aa17.57■□□□□ 0.4
CD44-224ENST00000526669 NPM2Q86SE8 214 aaKnown RBP17.57■□□□□ 0.4
CD44-224ENST00000526669 CHMP4AQ9BY43 222 aa17.57■□□□□ 0.4
CD44-224ENST00000526669 HYPKQ9NX55 129 aa17.57■□□□□ 0.4
CD44-224ENST00000526669 RCAN3Q9UKA8 241 aa17.57■□□□□ 0.4
CD44-224ENST00000526669 PNPLA7Q6ZV29 1317 aa17.56■□□□□ 0.4
CD44-224ENST00000526669 MSH5O43196 834 aa17.56■□□□□ 0.4
CD44-224ENST00000526669 COPS6Q7L5N1 327 aa17.56■□□□□ 0.4
CD44-224ENST00000526669 ZNF428Q96B54 188 aa17.56■□□□□ 0.4
CD44-224ENST00000526669 TBC1D2BQ9UPU7 963 aa17.56■□□□□ 0.4
CD44-224ENST00000526669 HMGB2P26583 209 aaKnown RBP17.55■□□□□ 0.4
CD44-224ENST00000526669 SSFA2P28290 1259 aa17.55■□□□□ 0.4
CD44-224ENST00000526669 TRAPPC3LQ5T215 181 aa17.55■□□□□ 0.4
CD44-224ENST00000526669 DZIP3Q86Y13 1208 aaKnown RBP17.55■□□□□ 0.4
CD44-224ENST00000526669 ARHGEF1Q92888 912 aaKnown RBP17.55■□□□□ 0.4
CD44-224ENST00000526669 SRP68Q9UHB9 627 aaKnown RBP17.55■□□□□ 0.4
CD44-224ENST00000526669 PSDA5PKW4 1024 aaPredicted RBP17.54■□□□□ 0.4
CD44-224ENST00000526669 FLIIQ13045 1269 aa17.54■□□□□ 0.4
CD44-224ENST00000526669 R3HDM1Q15032 1099 aaKnown RBP17.54■□□□□ 0.4
CD44-224ENST00000526669 COL23A1Q86Y22 540 aaPredicted RBP17.54■□□□□ 0.4
CD44-224ENST00000526669 ZBTB3Q9H5J0 574 aa17.54■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 55.5 ms