RNA–Protein interactions for RNA: ENST00000525348.1

CD44-217, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 568 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-217ENST00000525348 FAM196BA6NMK8 535 aa8.39□□□□□ -1.07
CD44-217ENST00000525348 GPR25O00155 361 aa8.39□□□□□ -1.07
CD44-217ENST00000525348 SRPK2P78362 688 aaKnown RBP8.39□□□□□ -1.07
CD44-217ENST00000525348 DPYDQ12882 1025 aa8.39□□□□□ -1.07
CD44-217ENST00000525348 UBAP2LQ14157 1087 aaKnown RBP8.39□□□□□ -1.07
CD44-217ENST00000525348 SH3PXD2AQ5TCZ1 1133 aa8.39□□□□□ -1.07
CD44-217ENST00000525348 GTPBP3Q969Y2 492 aaKnown RBP8.39□□□□□ -1.07
CD44-217ENST00000525348 CNTNAP3BQ96NU0 1288 aa8.39□□□□□ -1.07
CD44-217ENST00000525348 CNTNAP3Q9BZ76 1288 aa8.39□□□□□ -1.07
CD44-217ENST00000525348 TSPAN10Q9H1Z9 355 aaPredicted RBP8.39□□□□□ -1.07
CD44-217ENST00000525348 CABP1Q9NZU7 370 aa8.39□□□□□ -1.07
CD44-217ENST00000525348 M0R2N6 131 aa8.38□□□□□ -1.07
CD44-217ENST00000525348 LGR5O75473 907 aa8.38□□□□□ -1.07
CD44-217ENST00000525348 LARP1Q6PKG0 1096 aaKnown RBP8.38□□□□□ -1.07
CD44-217ENST00000525348 NUCKS1Q9H1E3 243 aaKnown RBP8.38□□□□□ -1.07
CD44-217ENST00000525348 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP8.37□□□□□ -1.07
CD44-217ENST00000525348 TXLNAP40222 546 aa8.37□□□□□ -1.07
CD44-217ENST00000525348 ANKMY2Q8IV38 441 aa8.37□□□□□ -1.07
CD44-217ENST00000525348 C21orf2O43822 256 aa8.36□□□□□ -1.07
CD44-217ENST00000525348 SEC13P55735 322 aa8.36□□□□□ -1.07
CD44-217ENST00000525348 TEAD4Q15561 434 aa8.36□□□□□ -1.07
CD44-217ENST00000525348 GAS2L2Q8NHY3 880 aa8.36□□□□□ -1.07
CD44-217ENST00000525348 AIDAQ96BJ3 306 aa8.36□□□□□ -1.07
CD44-217ENST00000525348 KLRG1Q96E93 195 aa8.36□□□□□ -1.07
CD44-217ENST00000525348 GMCL1Q96IK5 515 aa8.36□□□□□ -1.07
CD44-217ENST00000525348 H7C1W4 665 aa8.35□□□□□ -1.07
CD44-217ENST00000525348 L3MBTL2Q969R5 705 aa8.35□□□□□ -1.07
CD44-217ENST00000525348 CRISPLD1Q9H336 500 aa8.35□□□□□ -1.07
CD44-217ENST00000525348 EML1O00423 815 aa8.34□□□□□ -1.07
CD44-217ENST00000525348 NOS2P35228 1153 aa8.34□□□□□ -1.07
CD44-217ENST00000525348 INSM1Q01101 510 aaPredicted RBP8.34□□□□□ -1.07
CD44-217ENST00000525348 POTEAQ6S8J7 498 aa8.34□□□□□ -1.07
CD44-217ENST00000525348 CCDC82Q8N4S0 544 aa8.34□□□□□ -1.07
CD44-217ENST00000525348 ZMIZ1Q9ULJ6 1067 aa8.34□□□□□ -1.07
CD44-217ENST00000525348 C7orf43Q8WVR3 580 aa8.33□□□□□ -1.08
CD44-217ENST00000525348 CCDC97Q96F63 343 aaPredicted RBP8.33□□□□□ -1.08
CD44-217ENST00000525348 ZDHHC3Q9NYG2 299 aa8.33□□□□□ -1.08
CD44-217ENST00000525348 SERTM1A2A2V5 107 aa8.32□□□□□ -1.08
CD44-217ENST00000525348 CSB-PGBD3P0DP91 1061 aa8.32□□□□□ -1.08
CD44-217ENST00000525348 PSMA6P60900 246 aaKnown RBP8.32□□□□□ -1.08
CD44-217ENST00000525348 NBPF1Q3BBV0 1214 aa8.32□□□□□ -1.08
CD44-217ENST00000525348 PGBD3Q8N328 593 aa8.32□□□□□ -1.08
CD44-217ENST00000525348 ZSCAN1Q8NBB4 408 aa8.32□□□□□ -1.08
CD44-217ENST00000525348 C1orf216Q8TAB5 229 aa8.32□□□□□ -1.08
CD44-217ENST00000525348 ZIC5Q96T25 663 aa8.32□□□□□ -1.08
CD44-217ENST00000525348 NDFIP2Q9NV92 336 aa8.32□□□□□ -1.08
CD44-217ENST00000525348 SERPINA10Q9UK55 444 aa8.32□□□□□ -1.08
CD44-217ENST00000525348 HCN2Q9UL51 889 aa8.32□□□□□ -1.08
CD44-217ENST00000525348 TIMELESSQ9UNS1 1208 aa8.32□□□□□ -1.08
CD44-217ENST00000525348 NOVA2Q9UNW9 492 aaKnown RBP8.32□□□□□ -1.08
CD44-217ENST00000525348 RBM19Q9Y4C8 960 aaKnown RBP8.32□□□□□ -1.08
CD44-217ENST00000525348 A0A1W2PNR3 127 aa8.31□□□□□ -1.08
CD44-217ENST00000525348 LBRQ14739 615 aaKnown RBP8.31□□□□□ -1.08
CD44-217ENST00000525348 WHAMMQ8TF30 809 aa8.31□□□□□ -1.08
CD44-217ENST00000525348 STK32AQ8WU08 396 aa8.31□□□□□ -1.08
CD44-217ENST00000525348 SCG3Q8WXD2 468 aaKnown RBP8.31□□□□□ -1.08
CD44-217ENST00000525348 HINFPQ9BQA5 517 aa8.31□□□□□ -1.08
CD44-217ENST00000525348 ZNF232Q9UNY5 417 aa8.31□□□□□ -1.08
CD44-217ENST00000525348 ATAD2Q6PL18 1390 aa8.31□□□□□ -1.08
CD44-217ENST00000525348 PPP1R12BO60237 982 aaPredicted RBP8.3□□□□□ -1.08
CD44-217ENST00000525348 SLURP2P0DP57 97 aa8.3□□□□□ -1.08
CD44-217ENST00000525348 EFHC2Q5JST6 749 aa8.3□□□□□ -1.08
CD44-217ENST00000525348 C2orf49Q9BVC5 232 aaPredicted RBP8.3□□□□□ -1.08
CD44-217ENST00000525348 ZCCHC2Q9C0B9 1178 aaKnown RBP8.3□□□□□ -1.08
CD44-217ENST00000525348 HCN4Q9Y3Q4 1203 aa8.3□□□□□ -1.08
CD44-217ENST00000525348 BNIP3LO60238 219 aa8.29□□□□□ -1.08
CD44-217ENST00000525348 ADAMTS2O95450 1211 aa8.29□□□□□ -1.08
CD44-217ENST00000525348 TATP17735 454 aaPredicted RBP8.29□□□□□ -1.08
CD44-217ENST00000525348 HIRAP54198 1017 aaPredicted RBP8.29□□□□□ -1.08
CD44-217ENST00000525348 ARSJQ5FYB0 599 aaPredicted RBP8.29□□□□□ -1.08
CD44-217ENST00000525348 FOXR1Q6PIV2 292 aa8.29□□□□□ -1.08
CD44-217ENST00000525348 FAM200AQ8TCP9 573 aa8.29□□□□□ -1.08
CD44-217ENST00000525348 ABHD17AQ96GS6 310 aa8.29□□□□□ -1.08
CD44-217ENST00000525348 TRERF1Q96PN7 1200 aa8.29□□□□□ -1.08
CD44-217ENST00000525348 MBIPQ9NS73 344 aa8.29□□□□□ -1.08
CD44-217ENST00000525348 ATG7O95352 703 aa8.28□□□□□ -1.08
CD44-217ENST00000525348 FAM69CQ0P6D2 419 aa8.28□□□□□ -1.08
CD44-217ENST00000525348 ELOAQ14241 798 aaKnown RBP8.28□□□□□ -1.08
CD44-217ENST00000525348 NLRP8Q86W28 1048 aa8.28□□□□□ -1.08
CD44-217ENST00000525348 CHMP7Q8WUX9 453 aaPredicted RBP8.28□□□□□ -1.08
CD44-217ENST00000525348 PBXIP1Q96AQ6 731 aa8.28□□□□□ -1.08
CD44-217ENST00000525348 CFHR5Q9BXR6 569 aa8.28□□□□□ -1.08
CD44-217ENST00000525348 PHACTR1Q9C0D0 580 aa8.28□□□□□ -1.08
CD44-217ENST00000525348 IGF1RP08069 1367 aa8.27□□□□□ -1.09
CD44-217ENST00000525348 IGFBP4P22692 258 aa8.27□□□□□ -1.09
CD44-217ENST00000525348 WEE1P30291 646 aa8.27□□□□□ -1.09
CD44-217ENST00000525348 SRSF11Q05519 484 aaKnown RBP8.27□□□□□ -1.09
CD44-217ENST00000525348 ZNF385CQ66K41 422 aaPredicted RBP8.27□□□□□ -1.09
CD44-217ENST00000525348 STAG2Q8N3U4 1231 aa8.27□□□□□ -1.09
CD44-217ENST00000525348 BICDL1Q6ZP65 573 aa8.26□□□□□ -1.09
CD44-217ENST00000525348 PCDHGC4Q9Y5F7 938 aa8.26□□□□□ -1.09
CD44-217ENST00000525348 DCDC2BA2VCK2 349 aa8.25□□□□□ -1.09
CD44-217ENST00000525348 SUPT5HO00267 1087 aaKnown RBP8.25□□□□□ -1.09
CD44-217ENST00000525348 C2CD2LO14523 706 aa8.25□□□□□ -1.09
CD44-217ENST00000525348 ATXN7O15265 892 aaPredicted RBP8.25□□□□□ -1.09
CD44-217ENST00000525348 MX2P20592 715 aa8.25□□□□□ -1.09
CD44-217ENST00000525348 TMEM164Q5U3C3 297 aa8.25□□□□□ -1.09
CD44-217ENST00000525348 C1orf53Q5VUE5 145 aa8.25□□□□□ -1.09
CD44-217ENST00000525348 LYPD4Q6UWN0 246 aa8.25□□□□□ -1.09
CD44-217ENST00000525348 LRRC69Q6ZNQ3 347 aa8.25□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 145.7 ms