RNA–Protein interactions for RNA: ENST00000520286.5

LSM1-202, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best)

Gene LSM1, Length 776 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-202ENST00000520286 LRFN2Q9ULH4 789 aa11.99□□□□□ -0.49
LSM1-202ENST00000520286 CENPCQ03188 943 aa11.98□□□□□ -0.49
LSM1-202ENST00000520286 TEAD4Q15561 434 aa11.98□□□□□ -0.49
LSM1-202ENST00000520286 ZNF697Q5TEC3 545 aa11.98□□□□□ -0.49
LSM1-202ENST00000520286 POTEAQ6S8J7 498 aa11.98□□□□□ -0.49
LSM1-202ENST00000520286 TMC1Q8TDI8 760 aa11.98□□□□□ -0.49
LSM1-202ENST00000520286 CITED4Q96RK1 184 aa11.98□□□□□ -0.49
LSM1-202ENST00000520286 EML1O00423 815 aa11.97□□□□□ -0.49
LSM1-202ENST00000520286 FZD6O60353 706 aa11.97□□□□□ -0.49
LSM1-202ENST00000520286 PTGIRP43119 386 aa11.97□□□□□ -0.49
LSM1-202ENST00000520286 FOXC1Q12948 553 aa11.97□□□□□ -0.49
LSM1-202ENST00000520286 Q6ZVU0 165 aa11.97□□□□□ -0.49
LSM1-202ENST00000520286 ABTB2Q8N961 1025 aa11.97□□□□□ -0.49
LSM1-202ENST00000520286 FHDC1Q9C0D6 1143 aaPredicted RBP11.97□□□□□ -0.49
LSM1-202ENST00000520286 CCDC87Q9NVE4 849 aa11.97□□□□□ -0.49
LSM1-202ENST00000520286 MEN1O00255 615 aa11.96□□□□□ -0.49
LSM1-202ENST00000520286 P4HBP07237 508 aaKnown RBP11.96□□□□□ -0.49
LSM1-202ENST00000520286 VAMP1P23763 118 aa11.96□□□□□ -0.49
LSM1-202ENST00000520286 NOS2P35228 1153 aa11.96□□□□□ -0.49
LSM1-202ENST00000520286 SH3PXD2AQ5TCZ1 1133 aa11.96□□□□□ -0.49
LSM1-202ENST00000520286 ZNF598Q86UK7 904 aaKnown RBP11.96□□□□□ -0.49
LSM1-202ENST00000520286 SNIP1Q8TAD8 396 aaKnown RBP11.96□□□□□ -0.49
LSM1-202ENST00000520286 ITPKCQ96DU7 683 aa11.96□□□□□ -0.49
LSM1-202ENST00000520286 NLRP3Q96P20 1036 aa11.96□□□□□ -0.49
LSM1-202ENST00000520286 BCL11AQ9H165 835 aa11.96□□□□□ -0.49
LSM1-202ENST00000520286 CABP1Q9NZU7 370 aa11.96□□□□□ -0.49
LSM1-202ENST00000520286 ZNF232Q9UNY5 417 aa11.96□□□□□ -0.49
LSM1-202ENST00000520286 TREHO43280 583 aa11.95□□□□□ -0.5
LSM1-202ENST00000520286 IGSF3O75054 1194 aa11.95□□□□□ -0.5
LSM1-202ENST00000520286 ZIC2O95409 532 aaPredicted RBP11.95□□□□□ -0.5
LSM1-202ENST00000520286 BRD2P25440 801 aaKnown RBP11.95□□□□□ -0.5
LSM1-202ENST00000520286 HIRAP54198 1017 aaPredicted RBP11.95□□□□□ -0.5
LSM1-202ENST00000520286 IFFO2Q5TF58 517 aa11.95□□□□□ -0.5
LSM1-202ENST00000520286 ALDH16A1Q8IZ83 802 aa11.95□□□□□ -0.5
LSM1-202ENST00000520286 ZDHHC1Q8WTX9 485 aa11.95□□□□□ -0.5
LSM1-202ENST00000520286 L3MBTL2Q969R5 705 aa11.94□□□□□ -0.5
LSM1-202ENST00000520286 AGBL1Q96MI9 1066 aa11.94□□□□□ -0.5
LSM1-202ENST00000520286 KLF16Q9BXK1 252 aaPredicted RBP11.94□□□□□ -0.5
LSM1-202ENST00000520286 PKD2L1Q9P0L9 805 aa11.94□□□□□ -0.5
LSM1-202ENST00000520286 HCN4Q9Y3Q4 1203 aa11.94□□□□□ -0.5
LSM1-202ENST00000520286 ZBTB39O15060 712 aa11.93□□□□□ -0.5
LSM1-202ENST00000520286 TCF3P15923 654 aa11.93□□□□□ -0.5
LSM1-202ENST00000520286 FMR1Q06787 632 aaKnown RBP eCLIP11.93□□□□□ -0.5
LSM1-202ENST00000520286 PRKD2Q9BZL6 878 aa11.93□□□□□ -0.5
LSM1-202ENST00000520286 WDR4P57081 412 aaKnown RBP11.92□□□□□ -0.5
LSM1-202ENST00000520286 RELBQ01201 579 aa11.92□□□□□ -0.5
LSM1-202ENST00000520286 RTN1Q16799 776 aa11.92□□□□□ -0.5
LSM1-202ENST00000520286 C11orf91Q3C1V1 193 aa11.92□□□□□ -0.5
LSM1-202ENST00000520286 FAM26DQ5JW98 314 aa11.92□□□□□ -0.5
LSM1-202ENST00000520286 PPARGC1BQ86YN6 1023 aaKnown RBP11.92□□□□□ -0.5
LSM1-202ENST00000520286 ZNF295-AS1Q8N0V1 137 aa11.92□□□□□ -0.5
LSM1-202ENST00000520286 DMRTB1Q96MA1 342 aa11.92□□□□□ -0.5
LSM1-202ENST00000520286 ZSCAN10Q96SZ4 725 aaPredicted RBP11.92□□□□□ -0.5
LSM1-202ENST00000520286 ZFAND3Q9H8U3 227 aa11.92□□□□□ -0.5
LSM1-202ENST00000520286 PARP3Q9Y6F1 533 aa11.92□□□□□ -0.5
LSM1-202ENST00000520286 PLCB3Q01970 1234 aa11.91□□□□□ -0.5
LSM1-202ENST00000520286 DGKZQ13574 1117 aa11.91□□□□□ -0.5
LSM1-202ENST00000520286 ATCAYQ86WG3 371 aa11.91□□□□□ -0.5
LSM1-202ENST00000520286 GTF2E1P29083 439 aaPredicted RBP11.9□□□□□ -0.5
LSM1-202ENST00000520286 PDE3BQ13370 1112 aa11.9□□□□□ -0.5
LSM1-202ENST00000520286 DSC3Q14574 896 aa11.9□□□□□ -0.5
LSM1-202ENST00000520286 TMEM214Q6NUQ4 689 aaKnown RBP11.9□□□□□ -0.5
LSM1-202ENST00000520286 FAM129BQ96TA1 746 aa11.9□□□□□ -0.5
LSM1-202ENST00000520286 NIFKQ9BYG3 293 aaKnown RBP11.9□□□□□ -0.5
LSM1-202ENST00000520286 PHACTR1Q9C0D0 580 aa11.9□□□□□ -0.5
LSM1-202ENST00000520286 ZNF395Q9H8N7 513 aaPredicted RBP11.9□□□□□ -0.5
LSM1-202ENST00000520286 TTC24A2A3L6 582 aaPredicted RBP11.89□□□□□ -0.51
LSM1-202ENST00000520286 J3QL48 77 aa11.89□□□□□ -0.51
LSM1-202ENST00000520286 KLK14Q9P0G3 267 aa11.89□□□□□ -0.51
LSM1-202ENST00000520286 TIMP2P16035 220 aa11.88□□□□□ -0.51
LSM1-202ENST00000520286 MAPK8P45983 427 aa11.88□□□□□ -0.51
LSM1-202ENST00000520286 EHHADHQ08426 723 aa11.88□□□□□ -0.51
LSM1-202ENST00000520286 ETFBKMTQ8IXQ9 262 aa11.88□□□□□ -0.51
LSM1-202ENST00000520286 POLIQ9UNA4 740 aa11.88□□□□□ -0.51
LSM1-202ENST00000520286 GPR182O15218 404 aa11.87□□□□□ -0.51
LSM1-202ENST00000520286 RECKO95980 971 aa11.87□□□□□ -0.51
LSM1-202ENST00000520286 IGHA2P01877 340 aa11.87□□□□□ -0.51
LSM1-202ENST00000520286 CYP4X1Q8N118 509 aa11.87□□□□□ -0.51
LSM1-202ENST00000520286 RHBDD1Q8TEB9 315 aa11.87□□□□□ -0.51
LSM1-202ENST00000520286 IFT43Q96FT9 208 aa11.87□□□□□ -0.51
LSM1-202ENST00000520286 LDHBP07195 334 aaKnown RBP11.86□□□□□ -0.51
LSM1-202ENST00000520286 MZF1P28698 734 aaPredicted RBP11.86□□□□□ -0.51
LSM1-202ENST00000520286 FGD1P98174 961 aa11.86□□□□□ -0.51
LSM1-202ENST00000520286 DNM1Q05193 864 aaKnown RBP11.86□□□□□ -0.51
LSM1-202ENST00000520286 TSNAXIP1Q2TAA8 658 aa11.86□□□□□ -0.51
LSM1-202ENST00000520286 ZAP70P43403 619 aa11.85□□□□□ -0.51
LSM1-202ENST00000520286 C1orf53Q5VUE5 145 aa11.85□□□□□ -0.51
LSM1-202ENST00000520286 GJD3Q8N144 294 aa11.85□□□□□ -0.51
LSM1-202ENST00000520286 EDEM1Q92611 657 aa11.85□□□□□ -0.51
LSM1-202ENST00000520286 ALKBH8Q96BT7 664 aaKnown RBP11.85□□□□□ -0.51
LSM1-202ENST00000520286 USP5P45974 858 aa11.84□□□□□ -0.51
LSM1-202ENST00000520286 GNASQ5JWF2 1037 aa11.84□□□□□ -0.51
LSM1-202ENST00000520286 SLC27A3Q5K4L6 730 aa11.84□□□□□ -0.51
LSM1-202ENST00000520286 GRIP2Q9C0E4 1043 aa11.84□□□□□ -0.51
LSM1-202ENST00000520286 NIF3L1Q9GZT8 377 aa11.84□□□□□ -0.51
LSM1-202ENST00000520286 V9GY48 417 aaPredicted RBP11.84□□□□□ -0.51
LSM1-202ENST00000520286 PRPF40AO75400 957 aaKnown RBP11.83□□□□□ -0.52
LSM1-202ENST00000520286 PDGFAP04085 211 aa11.83□□□□□ -0.52
LSM1-202ENST00000520286 GPC1P35052 558 aa11.83□□□□□ -0.52
LSM1-202ENST00000520286 TXLNAP40222 546 aa11.83□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 165.3 ms