RNA–Protein interactions for RNA: ENST00000519895.5

MCF2-208, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene MCF2, Length 3,346 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-208ENST00000519895 ERBB3P21860 1342 aa4□□□□□ -1.77
MCF2-208ENST00000519895 LRFN3Q9BTN0 628 aa4□□□□□ -1.77
MCF2-208ENST00000519895 N4BP2Q86UW6 1770 aaPredicted RBP3.99□□□□□ -1.77
MCF2-208ENST00000519895 NCAPD2Q15021 1401 aa3.99□□□□□ -1.77
MCF2-208ENST00000519895 LRRC4BQ9NT99 713 aa3.99□□□□□ -1.77
MCF2-208ENST00000519895 TLL2Q9Y6L7 1015 aa3.99□□□□□ -1.77
MCF2-208ENST00000519895 CD163L1Q9NR16 1453 aa3.99□□□□□ -1.77
MCF2-208ENST00000519895 ANKRD36BQ8N2N9 1353 aa3.99□□□□□ -1.77
MCF2-208ENST00000519895 CFAP70Q5T0N1 1121 aa3.99□□□□□ -1.77
MCF2-208ENST00000519895 RNF181Q9P0P0 153 aa3.99□□□□□ -1.77
MCF2-208ENST00000519895 COL2A1P02458 1487 aaPredicted RBP3.99□□□□□ -1.77
MCF2-208ENST00000519895 PIEZO1Q92508 2521 aa3.99□□□□□ -1.77
MCF2-208ENST00000519895 UNC79Q9P2D8 2635 aa3.99□□□□□ -1.77
MCF2-208ENST00000519895 SOX1O00570 391 aaPredicted RBP3.98□□□□□ -1.77
MCF2-208ENST00000519895 RGL2O15211 777 aa3.98□□□□□ -1.77
MCF2-208ENST00000519895 TESK2Q96S53 571 aa3.98□□□□□ -1.77
MCF2-208ENST00000519895 CCDC61Q9Y6R9 512 aa3.98□□□□□ -1.77
MCF2-208ENST00000519895 IQCA1LA6NCM1 817 aa3.98□□□□□ -1.77
MCF2-208ENST00000519895 FMR1Q06787 632 aaKnown RBP eCLIP3.98□□□□□ -1.77
MCF2-208ENST00000519895 RGPD8O14715 1765 aaPredicted RBP3.98□□□□□ -1.77
MCF2-208ENST00000519895 NFAT5O94916 1531 aa3.98□□□□□ -1.77
MCF2-208ENST00000519895 PPARGC1BQ86YN6 1023 aaKnown RBP3.98□□□□□ -1.77
MCF2-208ENST00000519895 USP47Q96K76 1375 aa3.98□□□□□ -1.77
MCF2-208ENST00000519895 NBR1Q14596 966 aa3.97□□□□□ -1.77
MCF2-208ENST00000519895 CDAN1Q8IWY9 1227 aa3.97□□□□□ -1.77
MCF2-208ENST00000519895 PLEKHH1Q9ULM0 1364 aa3.97□□□□□ -1.77
MCF2-208ENST00000519895 ZNF831Q5JPB2 1677 aa3.97□□□□□ -1.77
MCF2-208ENST00000519895 SCN11AQ9UI33 1791 aa3.97□□□□□ -1.77
MCF2-208ENST00000519895 SOBPA7XYQ1 873 aa3.97□□□□□ -1.77
MCF2-208ENST00000519895 TMF1P82094 1093 aa3.97□□□□□ -1.77
MCF2-208ENST00000519895 NHLH1Q02575 133 aa3.97□□□□□ -1.77
MCF2-208ENST00000519895 TMEM31Q5JXX7 168 aa3.97□□□□□ -1.77
MCF2-208ENST00000519895 DPY19L2Q6NUT2 758 aa3.97□□□□□ -1.77
MCF2-208ENST00000519895 SCUBE2Q9NQ36 999 aa3.97□□□□□ -1.77
MCF2-208ENST00000519895 L3MBTL3Q96JM7 780 aaPredicted RBP3.96□□□□□ -1.77
MCF2-208ENST00000519895 PRAM1Q96QH2 718 aa3.96□□□□□ -1.77
MCF2-208ENST00000519895 PHF8Q9UPP1 1060 aa3.96□□□□□ -1.77
MCF2-208ENST00000519895 C5P01031 1676 aa3.96□□□□□ -1.77
MCF2-208ENST00000519895 PPIP5K1Q6PFW1 1433 aa3.96□□□□□ -1.78
MCF2-208ENST00000519895 ATXN2LQ8WWM7 1075 aaKnown RBP3.96□□□□□ -1.78
MCF2-208ENST00000519895 ZNF646O15015 1829 aaPredicted RBP3.96□□□□□ -1.78
MCF2-208ENST00000519895 ACEP12821 1306 aa3.96□□□□□ -1.78
MCF2-208ENST00000519895 DLEC1Q9Y238 1755 aa3.96□□□□□ -1.78
MCF2-208ENST00000519895 NOGQ13253 232 aa3.96□□□□□ -1.78
MCF2-208ENST00000519895 ANKRD24Q8TF21 1146 aa3.96□□□□□ -1.78
MCF2-208ENST00000519895 POGKQ9P215 609 aa3.96□□□□□ -1.78
MCF2-208ENST00000519895 RGPD5Q99666 1765 aa3.96□□□□□ -1.78
MCF2-208ENST00000519895 C7P10643 843 aa3.95□□□□□ -1.78
MCF2-208ENST00000519895 CD44P16070 742 aaKnown RBP3.95□□□□□ -1.78
MCF2-208ENST00000519895 LMNB1P20700 586 aa3.95□□□□□ -1.78
MCF2-208ENST00000519895 TMEFF1Q8IYR6 380 aa3.95□□□□□ -1.78
MCF2-208ENST00000519895 KCNH5Q8NCM2 988 aa3.95□□□□□ -1.78
MCF2-208ENST00000519895 SLC39A7Q92504 469 aa3.95□□□□□ -1.78
MCF2-208ENST00000519895 NUDT16Q96DE0 195 aaKnown RBP3.95□□□□□ -1.78
MCF2-208ENST00000519895 EIF4G2P78344 907 aaKnown RBP eCLIP3.95□□□□□ -1.78
MCF2-208ENST00000519895 CDK19Q9BWU1 502 aa3.95□□□□□ -1.78
MCF2-208ENST00000519895 CARD11Q9BXL7 1154 aa3.95□□□□□ -1.78
MCF2-208ENST00000519895 TERF2IPQ9NYB0 399 aa3.95□□□□□ -1.78
MCF2-208ENST00000519895 RGL3Q3MIN7 710 aa3.95□□□□□ -1.78
MCF2-208ENST00000519895 SPRYD3Q8NCJ5 442 aa3.95□□□□□ -1.78
MCF2-208ENST00000519895 LRCH3Q96II8 777 aa3.95□□□□□ -1.78
MCF2-208ENST00000519895 CGNL1Q0VF96 1302 aa3.94□□□□□ -1.78
MCF2-208ENST00000519895 ARMC5Q96C12 935 aa3.94□□□□□ -1.78
MCF2-208ENST00000519895 CCDC88AQ3V6T2 1871 aa3.94□□□□□ -1.78
MCF2-208ENST00000519895 KDM3BQ7LBC6 1761 aa3.94□□□□□ -1.78
MCF2-208ENST00000519895 SIN3AQ96ST3 1273 aa3.94□□□□□ -1.78
MCF2-208ENST00000519895 NR2E3Q9Y5X4 410 aa3.94□□□□□ -1.78
MCF2-208ENST00000519895 MMRN1Q13201 1228 aa3.93□□□□□ -1.78
MCF2-208ENST00000519895 NBPF1Q3BBV0 1214 aa3.93□□□□□ -1.78
MCF2-208ENST00000519895 HDGFL2Q7Z4V5 671 aaPredicted RBP3.93□□□□□ -1.78
MCF2-208ENST00000519895 ABT1Q9ULW3 272 aaKnown RBP3.93□□□□□ -1.78
MCF2-208ENST00000519895 CCDC7Q96M83 1385 aa3.93□□□□□ -1.78
MCF2-208ENST00000519895 ZBTB7BO15156 539 aaPredicted RBP3.93□□□□□ -1.78
MCF2-208ENST00000519895 ESCO1Q5FWF5 840 aa3.93□□□□□ -1.78
MCF2-208ENST00000519895 NLRP13Q86W25 1043 aa3.93□□□□□ -1.78
MCF2-208ENST00000519895 TFCP2L1Q9NZI6 479 aa3.93□□□□□ -1.78
MCF2-208ENST00000519895 UTRNP46939 3433 aa3.93□□□□□ -1.78
MCF2-208ENST00000519895 TAF1LQ8IZX4 1826 aa3.93□□□□□ -1.78
MCF2-208ENST00000519895 KRT38O76015 456 aa3.93□□□□□ -1.78
MCF2-208ENST00000519895 MAFAQ8NHW3 353 aaPredicted RBP3.93□□□□□ -1.78
MCF2-208ENST00000519895 GUCD1Q96NT3 240 aa3.93□□□□□ -1.78
MCF2-208ENST00000519895 CFHR5Q9BXR6 569 aa3.93□□□□□ -1.78
MCF2-208ENST00000519895 TSKSQ9UJT2 592 aa3.93□□□□□ -1.78
MCF2-208ENST00000519895 TTC21BQ7Z4L5 1316 aa3.93□□□□□ -1.78
MCF2-208ENST00000519895 POTEB2H3BUK9 544 aa3.92□□□□□ -1.78
MCF2-208ENST00000519895 TMEM132EQ6IEE7 984 aa3.92□□□□□ -1.78
MCF2-208ENST00000519895 PNMA8AQ86V59 439 aaPredicted RBP3.92□□□□□ -1.78
MCF2-208ENST00000519895 DDX21Q9NR30 783 aaKnown RBP eCLIP3.92□□□□□ -1.78
MCF2-208ENST00000519895 LTN1O94822 1766 aa3.92□□□□□ -1.78
MCF2-208ENST00000519895 FOXO3O43524 673 aa3.92□□□□□ -1.78
MCF2-208ENST00000519895 DDB1Q16531 1140 aa3.92□□□□□ -1.78
MCF2-208ENST00000519895 WAPLQ7Z5K2 1190 aa3.92□□□□□ -1.78
MCF2-208ENST00000519895 COL23A1Q86Y22 540 aaPredicted RBP3.92□□□□□ -1.78
MCF2-208ENST00000519895 TRAK1Q9UPV9 953 aa3.92□□□□□ -1.78
MCF2-208ENST00000519895 BCS1LQ9Y276 419 aa3.92□□□□□ -1.78
MCF2-208ENST00000519895 C4AP0C0L4 1744 aa3.92□□□□□ -1.78
MCF2-208ENST00000519895 PRR33A8MZF0 331 aa3.92□□□□□ -1.78
MCF2-208ENST00000519895 FCHSD2O94868 740 aa3.92□□□□□ -1.78
MCF2-208ENST00000519895 SAMD7Q7Z3H4 446 aa3.92□□□□□ -1.78
MCF2-208ENST00000519895 A0A1W2PP64 1363 aa3.91□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 177.9 ms