RNA–Protein interactions for RNA: ENST00000518538.5

VEGFA-217, Transcript of vascular endothelial growth factor A, humanhuman

TSL 2

Gene VEGFA, Length 535 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VEGFA-217ENST00000518538 FAM9BQ8IZU0 186 aa28.8■■■□□ 2.2
VEGFA-217ENST00000518538 TSPYL4Q9UJ04 414 aa28.8■■■□□ 2.2
VEGFA-217ENST00000518538 CCER2I3L3R5 266 aa28.79■■■□□ 2.2
VEGFA-217ENST00000518538 SGIP1Q9BQI5 828 aa28.79■■■□□ 2.2
VEGFA-217ENST00000518538 COL24A1Q17RW2 1714 aa28.78■■■□□ 2.2
VEGFA-217ENST00000518538 EIF4A1P60842 406 aaKnown RBP28.78■■■□□ 2.2
VEGFA-217ENST00000518538 ZBTB1Q9Y2K1 713 aa28.78■■■□□ 2.2
VEGFA-217ENST00000518538 ARHGEF1Q92888 912 aaKnown RBP28.77■■■□□ 2.2
VEGFA-217ENST00000518538 SOS1Q07889 1333 aaPredicted RBP28.76■■■□□ 2.19
VEGFA-217ENST00000518538 PRAMEF22A3QJZ6 481 aa28.75■■■□□ 2.19
VEGFA-217ENST00000518538 CHL1O00533 1208 aa28.75■■■□□ 2.19
VEGFA-217ENST00000518538 NCBP3Q53F19 620 aaKnown RBP28.75■■■□□ 2.19
VEGFA-217ENST00000518538 USP16Q9Y5T5 823 aa28.75■■■□□ 2.19
VEGFA-217ENST00000518538 RFC4P35249 363 aa28.74■■■□□ 2.19
VEGFA-217ENST00000518538 CALD1Q05682 793 aaKnown RBP28.74■■■□□ 2.19
VEGFA-217ENST00000518538 CCDC27Q2M243 656 aa28.74■■■□□ 2.19
VEGFA-217ENST00000518538 PPP1R1BQ9UD71 204 aaPredicted RBP28.74■■■□□ 2.19
VEGFA-217ENST00000518538 SRCAPQ6ZRS2 3230 aa28.73■■■□□ 2.19
VEGFA-217ENST00000518538 GIGYF1O75420 1035 aaPredicted RBP28.73■■■□□ 2.19
VEGFA-217ENST00000518538 C4AP0C0L4 1744 aa28.73■■■□□ 2.19
VEGFA-217ENST00000518538 POLD1P28340 1107 aa28.73■■■□□ 2.19
VEGFA-217ENST00000518538 MSL1Q68DK7 614 aa28.73■■■□□ 2.19
VEGFA-217ENST00000518538 CANXP27824 592 aaKnown RBP28.72■■■□□ 2.19
VEGFA-217ENST00000518538 CFAP44Q96MT7 982 aa28.72■■■□□ 2.19
VEGFA-217ENST00000518538 LAS1LQ9Y4W2 734 aaKnown RBP28.72■■■□□ 2.19
VEGFA-217ENST00000518538 COL15A1P39059 1388 aa28.72■■■□□ 2.19
VEGFA-217ENST00000518538 LAMB4A4D0S4 1761 aa28.71■■■□□ 2.19
VEGFA-217ENST00000518538 A1BGP04217 495 aa28.7■■■□□ 2.18
VEGFA-217ENST00000518538 SENP3-EIF4A1A0A087X0R7 540 aa28.69■■■□□ 2.18
VEGFA-217ENST00000518538 EIF5P55010 431 aaKnown RBP28.69■■■□□ 2.18
VEGFA-217ENST00000518538 IFT57Q9NWB7 429 aa28.69■■■□□ 2.18
VEGFA-217ENST00000518538 USP42Q9H9J4 1324 aaKnown RBP28.69■■■□□ 2.18
VEGFA-217ENST00000518538 ZNF853P0CG23 659 aa28.68■■■□□ 2.18
VEGFA-217ENST00000518538 IL6STP40189 918 aaPredicted RBP28.68■■■□□ 2.18
VEGFA-217ENST00000518538 WWC1Q8IX03 1113 aa28.68■■■□□ 2.18
VEGFA-217ENST00000518538 ARXQ96QS3 562 aa28.68■■■□□ 2.18
VEGFA-217ENST00000518538 GYS1P13807 737 aa28.66■■■□□ 2.18
VEGFA-217ENST00000518538 GNAI1P63096 354 aa28.66■■■□□ 2.18
VEGFA-217ENST00000518538 MIER1Q8N108 512 aa28.66■■■□□ 2.18
VEGFA-217ENST00000518538 SRP68Q9UHB9 627 aaKnown RBP28.66■■■□□ 2.18
VEGFA-217ENST00000518538 A0A087WZG4 1122 aa28.65■■■□□ 2.18
VEGFA-217ENST00000518538 NLGN1Q8N2Q7 840 aa28.65■■■□□ 2.18
VEGFA-217ENST00000518538 MBIPQ9NS73 344 aa28.65■■■□□ 2.18
VEGFA-217ENST00000518538 ZPR1O75312 459 aa28.64■■■□□ 2.18
VEGFA-217ENST00000518538 NGEFQ8N5V2 710 aa28.64■■■□□ 2.18
VEGFA-217ENST00000518538 NARFQ9UHQ1 456 aa28.64■■■□□ 2.18
VEGFA-217ENST00000518538 ZNF330Q9Y3S2 320 aaPredicted RBP28.63■■■□□ 2.17
VEGFA-217ENST00000518538 PIP4K2AP48426 406 aaPredicted RBP28.62■■■□□ 2.17
VEGFA-217ENST00000518538 NPM2Q86SE8 214 aaKnown RBP28.62■■■□□ 2.17
VEGFA-217ENST00000518538 NBPF26B4DH59 902 aa28.61■■■□□ 2.17
VEGFA-217ENST00000518538 USPL1Q5W0Q7 1092 aa28.61■■■□□ 2.17
VEGFA-217ENST00000518538 NBPF10Q6P3W6 841 aaKnown RBP28.61■■■□□ 2.17
VEGFA-217ENST00000518538 NBPF15Q8N660 670 aa28.61■■■□□ 2.17
VEGFA-217ENST00000518538 SALL2Q9Y467 1007 aaPredicted RBP28.61■■■□□ 2.17
VEGFA-217ENST00000518538 IL16Q14005 1332 aa28.61■■■□□ 2.17
VEGFA-217ENST00000518538 KRT24Q2M2I5 525 aa28.6■■■□□ 2.17
VEGFA-217ENST00000518538 MMP10P09238 476 aa28.59■■■□□ 2.17
VEGFA-217ENST00000518538 FKBP8Q14318 412 aa28.59■■■□□ 2.17
VEGFA-217ENST00000518538 FHDC1Q9C0D6 1143 aaPredicted RBP28.59■■■□□ 2.17
VEGFA-217ENST00000518538 ERBB4Q15303 1308 aa28.59■■■□□ 2.17
VEGFA-217ENST00000518538 HOXB7P09629 217 aa28.57■■■□□ 2.16
VEGFA-217ENST00000518538 WDR63Q8IWG1 891 aa28.57■■■□□ 2.16
VEGFA-217ENST00000518538 TBC1D2BQ9UPU7 963 aa28.57■■■□□ 2.16
VEGFA-217ENST00000518538 EIF2S2P20042 333 aaKnown RBP28.56■■■□□ 2.16
VEGFA-217ENST00000518538 SCN7AQ01118 1682 aa28.56■■■□□ 2.16
VEGFA-217ENST00000518538 DZIP3Q86Y13 1208 aaKnown RBP28.56■■■□□ 2.16
VEGFA-217ENST00000518538 BCL2L12Q9HB09 334 aa28.56■■■□□ 2.16
VEGFA-217ENST00000518538 DUSP27Q5VZP5 1158 aa28.54■■■□□ 2.16
VEGFA-217ENST00000518538 SYT17Q9BSW7 474 aa28.54■■■□□ 2.16
VEGFA-217ENST00000518538 CAMTA2O94983 1202 aa28.53■■■□□ 2.16
VEGFA-217ENST00000518538 KLHL34Q8N239 644 aa28.52■■■□□ 2.16
VEGFA-217ENST00000518538 TSR2Q969E8 191 aaKnown RBP28.52■■■□□ 2.16
VEGFA-217ENST00000518538 PARP3Q9Y6F1 533 aa28.52■■■□□ 2.16
VEGFA-217ENST00000518538 BCORQ6W2J9 1755 aa28.52■■■□□ 2.16
VEGFA-217ENST00000518538 MYL6BP14649 208 aa28.51■■■□□ 2.15
VEGFA-217ENST00000518538 TM4SF1P30408 202 aa28.51■■■□□ 2.15
VEGFA-217ENST00000518538 PDIA6Q15084 440 aa28.5■■■□□ 2.15
VEGFA-217ENST00000518538 HDGFL1Q5TGJ6 251 aa28.5■■■□□ 2.15
VEGFA-217ENST00000518538 NECTIN2Q92692 538 aa28.5■■■□□ 2.15
VEGFA-217ENST00000518538 ZNF521Q96K83 1311 aa28.49■■■□□ 2.15
VEGFA-217ENST00000518538 DDR1Q08345 913 aa28.49■■■□□ 2.15
VEGFA-217ENST00000518538 NFIXQ14938 502 aa28.49■■■□□ 2.15
VEGFA-217ENST00000518538 CD2APQ9Y5K6 639 aa28.49■■■□□ 2.15
VEGFA-217ENST00000518538 POLRMTO00411 1230 aaKnown RBP28.48■■■□□ 2.15
VEGFA-217ENST00000518538 RGL2O15211 777 aa28.48■■■□□ 2.15
VEGFA-217ENST00000518538 LRP10Q7Z4F1 713 aa28.48■■■□□ 2.15
VEGFA-217ENST00000518538 C8orf58Q8NAV2 365 aa28.48■■■□□ 2.15
VEGFA-217ENST00000518538 PROSER3Q2NL68 480 aa28.47■■■□□ 2.15
VEGFA-217ENST00000518538 CLEC4GQ6UXB4 293 aa28.47■■■□□ 2.15
VEGFA-217ENST00000518538 DDX21Q9NR30 783 aaKnown RBP eCLIP28.47■■■□□ 2.15
VEGFA-217ENST00000518538 FANCIQ9NVI1 1328 aa28.46■■■□□ 2.15
VEGFA-217ENST00000518538 TBC1D9BQ66K14 1250 aa28.46■■■□□ 2.15
VEGFA-217ENST00000518538 ZNF652Q9Y2D9 606 aa28.46■■■□□ 2.15
VEGFA-217ENST00000518538 ELL2O00472 640 aaPredicted RBP28.45■■■□□ 2.14
VEGFA-217ENST00000518538 KIF6Q6ZMV9 814 aa28.45■■■□□ 2.14
VEGFA-217ENST00000518538 CHPF2Q9P2E5 772 aa28.45■■■□□ 2.14
VEGFA-217ENST00000518538 C10orf71Q711Q0 1435 aa28.44■■■□□ 2.14
VEGFA-217ENST00000518538 ANXA1P04083 346 aa28.44■■■□□ 2.14
VEGFA-217ENST00000518538 BICDL1Q6ZP65 573 aa28.44■■■□□ 2.14
VEGFA-217ENST00000518538 TTLL7Q6ZT98 887 aa28.44■■■□□ 2.14
Retrieved 100 of 20,778 RNA–protein pairs in 53.5 ms