RNA–Protein interactions for RNA: ENST00000518140.5

SLIT3-204, Transcript of slit guidance ligand 3, humanhuman

TSL 1 (best)

Gene SLIT3, Length 2,090 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIT3-204ENST00000518140 USP44Q9H0E7 712 aa29.31■■■□□ 2.28
SLIT3-204ENST00000518140 AIMP1Q12904 312 aaKnown RBP29.3■■■□□ 2.28
SLIT3-204ENST00000518140 JCADQ9P266 1359 aa29.3■■■□□ 2.28
SLIT3-204ENST00000518140 SLIT2O94813 1529 aa29.3■■■□□ 2.28
SLIT3-204ENST00000518140 TOGARAM1Q9Y4F4 1720 aa29.3■■■□□ 2.28
SLIT3-204ENST00000518140 PTCD1O75127 700 aaKnown RBP29.3■■■□□ 2.28
SLIT3-204ENST00000518140 NUCB1Q02818 461 aa29.3■■■□□ 2.28
SLIT3-204ENST00000518140 BEND3Q5T5X7 828 aa29.3■■■□□ 2.28
SLIT3-204ENST00000518140 SPATA31A5Q5VU36 1347 aa29.29■■■□□ 2.28
SLIT3-204ENST00000518140 SPATA31A7Q8IWB4 1347 aa29.29■■■□□ 2.28
SLIT3-204ENST00000518140 PIGBQ92521 554 aa29.29■■■□□ 2.28
SLIT3-204ENST00000518140 MAP3K2Q9Y2U5 619 aa29.29■■■□□ 2.28
SLIT3-204ENST00000518140 RPAP2Q8IXW5 612 aaPredicted RBP29.29■■■□□ 2.28
SLIT3-204ENST00000518140 C8orf37Q96NL8 207 aa29.29■■■□□ 2.28
SLIT3-204ENST00000518140 SRCIN1Q9C0H9 1055 aa29.29■■■□□ 2.28
SLIT3-204ENST00000518140 TMOD3Q9NYL9 352 aa29.29■■■□□ 2.28
SLIT3-204ENST00000518140 PXDNLA1KZ92 1463 aa29.28■■■□□ 2.28
SLIT3-204ENST00000518140 CCDC9Q9Y3X0 531 aaKnown RBP29.28■■■□□ 2.28
SLIT3-204ENST00000518140 GLI3P10071 1580 aa29.28■■■□□ 2.28
SLIT3-204ENST00000518140 KSR2Q6VAB6 950 aa29.27■■■□□ 2.28
SLIT3-204ENST00000518140 LRP10Q7Z4F1 713 aa29.27■■■□□ 2.28
SLIT3-204ENST00000518140 GNAI2P04899 355 aa29.27■■■□□ 2.28
SLIT3-204ENST00000518140 GCC1Q96CN9 775 aa29.27■■■□□ 2.28
SLIT3-204ENST00000518140 LNPKQ9C0E8 428 aa29.27■■■□□ 2.28
SLIT3-204ENST00000518140 ANKRD45Q5TZF3 282 aa29.26■■■□□ 2.27
SLIT3-204ENST00000518140 ASAP1Q9ULH1 1129 aa29.26■■■□□ 2.27
SLIT3-204ENST00000518140 C8orf34Q49A92 452 aa29.25■■■□□ 2.27
SLIT3-204ENST00000518140 NGLY1Q96IV0 654 aa29.25■■■□□ 2.27
SLIT3-204ENST00000518140 THRAP3Q9Y2W1 955 aaKnown RBP29.25■■■□□ 2.27
SLIT3-204ENST00000518140 GNAI3P08754 354 aa29.25■■■□□ 2.27
SLIT3-204ENST00000518140 CHD1LQ86WJ1 897 aa29.25■■■□□ 2.27
SLIT3-204ENST00000518140 XAGE3Q8WTP9 111 aa29.25■■■□□ 2.27
SLIT3-204ENST00000518140 DCTPP1Q9H773 170 aa29.25■■■□□ 2.27
SLIT3-204ENST00000518140 KCPQ6ZWJ8 1503 aa29.25■■■□□ 2.27
SLIT3-204ENST00000518140 COPS6Q7L5N1 327 aa29.24■■■□□ 2.27
SLIT3-204ENST00000518140 UNC5CLQ8IV45 518 aa29.24■■■□□ 2.27
SLIT3-204ENST00000518140 FAM161AQ3B820 660 aa29.23■■■□□ 2.27
SLIT3-204ENST00000518140 LRRFIP2Q9Y608 721 aaKnown RBP29.23■■■□□ 2.27
SLIT3-204ENST00000518140 TNS2Q63HR2 1409 aa29.22■■■□□ 2.27
SLIT3-204ENST00000518140 DDB1Q16531 1140 aa29.22■■■□□ 2.27
SLIT3-204ENST00000518140 CDCA7Q9BWT1 371 aaPredicted RBP29.22■■■□□ 2.27
SLIT3-204ENST00000518140 ATG3Q9NT62 314 aa29.22■■■□□ 2.27
SLIT3-204ENST00000518140 NBPF26B4DH59 902 aa29.21■■■□□ 2.27
SLIT3-204ENST00000518140 NBPF7P0C2Y1 421 aaPredicted RBP29.21■■■□□ 2.27
SLIT3-204ENST00000518140 NBPF14Q5TI25 921 aa29.21■■■□□ 2.27
SLIT3-204ENST00000518140 NBPF10Q6P3W6 841 aaKnown RBP29.21■■■□□ 2.27
SLIT3-204ENST00000518140 NBPF15Q8N660 670 aa29.21■■■□□ 2.27
SLIT3-204ENST00000518140 HSPA1LP34931 641 aa29.21■■■□□ 2.27
SLIT3-204ENST00000518140 PAPPAQ13219 1627 aa29.2■■■□□ 2.27
SLIT3-204ENST00000518140 N4BP2Q86UW6 1770 aaPredicted RBP29.2■■■□□ 2.27
SLIT3-204ENST00000518140 UBR2Q8IWV8 1755 aa29.2■■■□□ 2.27
SLIT3-204ENST00000518140 UBTFL1P0CB47 393 aaPredicted RBP29.2■■■□□ 2.26
SLIT3-204ENST00000518140 CWF19L2Q2TBE0 894 aaKnown RBP29.2■■■□□ 2.26
SLIT3-204ENST00000518140 BCL9LQ86UU0 1499 aa29.2■■■□□ 2.26
SLIT3-204ENST00000518140 WNK3Q9BYP7 1800 aa29.2■■■□□ 2.26
SLIT3-204ENST00000518140 NWD2Q9ULI1 1742 aa29.19■■■□□ 2.26
SLIT3-204ENST00000518140 A1BGP04217 495 aa29.19■■■□□ 2.26
SLIT3-204ENST00000518140 DDX58O95786 925 aaKnown RBP29.19■■■□□ 2.26
SLIT3-204ENST00000518140 PNMA6EA0A0J9YXQ4 647 aa29.18■■■□□ 2.26
SLIT3-204ENST00000518140 RIC3Q7Z5B4 369 aa29.18■■■□□ 2.26
SLIT3-204ENST00000518140 MARCH10Q8NA82 808 aaPredicted RBP29.18■■■□□ 2.26
SLIT3-204ENST00000518140 SYTL4Q96C24 671 aaPredicted RBP29.18■■■□□ 2.26
SLIT3-204ENST00000518140 LRP6O75581 1613 aa29.18■■■□□ 2.26
SLIT3-204ENST00000518140 PRIM1P49642 420 aaKnown RBP29.17■■■□□ 2.26
SLIT3-204ENST00000518140 BARGINQ6ZT62 677 aa29.17■■■□□ 2.26
SLIT3-204ENST00000518140 KAT6BQ8WYB5 2073 aa29.17■■■□□ 2.26
SLIT3-204ENST00000518140 ATP8B2P98198 1209 aa29.16■■■□□ 2.26
SLIT3-204ENST00000518140 FNBP4Q8N3X1 1017 aaPredicted RBP29.16■■■□□ 2.26
SLIT3-204ENST00000518140 BCL9O00512 1426 aa29.15■■■□□ 2.26
SLIT3-204ENST00000518140 ITGB4P16144 1822 aa29.15■■■□□ 2.26
SLIT3-204ENST00000518140 FAM98CQ17RN3 349 aaKnown RBP29.15■■■□□ 2.26
SLIT3-204ENST00000518140 ANKRD13DQ6ZTN6 518 aa29.15■■■□□ 2.26
SLIT3-204ENST00000518140 IGKV5-2P06315 115 aa29.14■■■□□ 2.26
SLIT3-204ENST00000518140 SPATA31A6Q5VVP1 1343 aa29.14■■■□□ 2.26
SLIT3-204ENST00000518140 BCL11AQ9H165 835 aa29.14■■■□□ 2.26
SLIT3-204ENST00000518140 APBB1O00213 710 aa29.14■■■□□ 2.25
SLIT3-204ENST00000518140 ALDH1L1O75891 902 aa29.14■■■□□ 2.25
SLIT3-204ENST00000518140 VPS72Q15906 364 aa29.14■■■□□ 2.25
SLIT3-204ENST00000518140 LINS1Q8NG48 757 aa29.14■■■□□ 2.25
SLIT3-204ENST00000518140 RBM42Q9BTD8 480 aaKnown RBP29.13■■■□□ 2.25
SLIT3-204ENST00000518140 HMMRO75330 724 aa29.13■■■□□ 2.25
SLIT3-204ENST00000518140 DNAJC10Q8IXB1 793 aa29.12■■■□□ 2.25
SLIT3-204ENST00000518140 ACSBG1Q96GR2 724 aa29.12■■■□□ 2.25
SLIT3-204ENST00000518140 SMARCA5O60264 1052 aaPredicted RBP29.11■■■□□ 2.25
SLIT3-204ENST00000518140 C16orf71Q8IYS4 520 aaPredicted RBP29.11■■■□□ 2.25
SLIT3-204ENST00000518140 SLC4A9Q96Q91 983 aa29.11■■■□□ 2.25
SLIT3-204ENST00000518140 LAMB4A4D0S4 1761 aa29.11■■■□□ 2.25
SLIT3-204ENST00000518140 METTL22Q9BUU2 404 aaPredicted RBP29.11■■■□□ 2.25
SLIT3-204ENST00000518140 NOP58Q9Y2X3 529 aaKnown RBP29.11■■■□□ 2.25
SLIT3-204ENST00000518140 MYD88Q99836 296 aa29.1■■■□□ 2.25
SLIT3-204ENST00000518140 C9orf78Q9NZ63 289 aaPredicted RBP29.1■■■□□ 2.25
SLIT3-204ENST00000518140 USP21Q9UK80 565 aa29.1■■■□□ 2.25
SLIT3-204ENST00000518140 ERBB4Q15303 1308 aa29.1■■■□□ 2.25
SLIT3-204ENST00000518140 TTLL7Q6ZT98 887 aa29.09■■■□□ 2.25
SLIT3-204ENST00000518140 EXOC6BQ9Y2D4 811 aa29.09■■■□□ 2.25
SLIT3-204ENST00000518140 PPP1R42Q7Z4L9 355 aa29.08■■■□□ 2.25
SLIT3-204ENST00000518140 A0A0G2JS52 829 aa29.08■■■□□ 2.25
SLIT3-204ENST00000518140 NPM2Q86SE8 214 aaKnown RBP29.08■■■□□ 2.25
SLIT3-204ENST00000518140 NEURL1BA8MQ27 555 aa29.07■■■□□ 2.24
SLIT3-204ENST00000518140 SEC24BO95487 1268 aa29.07■■■□□ 2.24
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms