RNA–Protein interactions for RNA: ENST00000514335.1

NIPBL-208, Transcript of NIPBL, cohesin loading factor, humanhuman

TSL 2

Gene NIPBL, Length 2,948 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIPBL-208ENST00000514335 WWC3Q9ULE0 1092 aa8.72□□□□□ -1.01
NIPBL-208ENST00000514335 CROCC2H7BZ55 1655 aa8.72□□□□□ -1.01
NIPBL-208ENST00000514335 A2MP01023 1474 aa8.72□□□□□ -1.01
NIPBL-208ENST00000514335 CCDC66A2RUB6 948 aa8.72□□□□□ -1.01
NIPBL-208ENST00000514335 C4orf46Q504U0 113 aa8.72□□□□□ -1.01
NIPBL-208ENST00000514335 SLX1AQ9BQ83 275 aa8.72□□□□□ -1.01
NIPBL-208ENST00000514335 RETREG1Q9H6L5 497 aa8.72□□□□□ -1.01
NIPBL-208ENST00000514335 ZSCAN26Q16670 478 aa8.71□□□□□ -1.01
NIPBL-208ENST00000514335 PICK1Q9NRD5 415 aa8.71□□□□□ -1.01
NIPBL-208ENST00000514335 IL16Q14005 1332 aa8.71□□□□□ -1.01
NIPBL-208ENST00000514335 TIMM44O43615 452 aa8.71□□□□□ -1.02
NIPBL-208ENST00000514335 RASA3Q14644 834 aa8.71□□□□□ -1.02
NIPBL-208ENST00000514335 CDC37Q16543 378 aaPredicted RBP8.71□□□□□ -1.02
NIPBL-208ENST00000514335 ELOA2Q8IYF1 753 aaPredicted RBP8.71□□□□□ -1.02
NIPBL-208ENST00000514335 SLC26A8Q96RN1 970 aa8.71□□□□□ -1.02
NIPBL-208ENST00000514335 BRMS1Q9HCU9 246 aa8.71□□□□□ -1.02
NIPBL-208ENST00000514335 FAM135BQ49AJ0 1406 aa8.71□□□□□ -1.02
NIPBL-208ENST00000514335 ANKRD33BA6NCL7 494 aa8.7□□□□□ -1.02
NIPBL-208ENST00000514335 LZTS2Q9BRK4 669 aa8.7□□□□□ -1.02
NIPBL-208ENST00000514335 RSPH9Q9H1X1 276 aaPredicted RBP8.7□□□□□ -1.02
NIPBL-208ENST00000514335 LRP5O75197 1615 aa8.7□□□□□ -1.02
NIPBL-208ENST00000514335 XIRP1Q702N8 1843 aaKnown RBP8.7□□□□□ -1.02
NIPBL-208ENST00000514335 GPATCH8Q9UKJ3 1502 aaKnown RBP8.7□□□□□ -1.02
NIPBL-208ENST00000514335 SBNO2Q9Y2G9 1366 aa8.7□□□□□ -1.02
NIPBL-208ENST00000514335 CFAP65Q6ZU64 1925 aaKnown RBP8.7□□□□□ -1.02
NIPBL-208ENST00000514335 CEP162Q5TB80 1403 aa8.7□□□□□ -1.02
NIPBL-208ENST00000514335 IQCF2Q8IXL9 164 aa8.7□□□□□ -1.02
NIPBL-208ENST00000514335 CLASRPQ8N2M8 674 aaKnown RBP8.7□□□□□ -1.02
NIPBL-208ENST00000514335 PSMD2Q13200 908 aa8.69□□□□□ -1.02
NIPBL-208ENST00000514335 LARP1BQ659C4 914 aaKnown RBP8.69□□□□□ -1.02
NIPBL-208ENST00000514335 NEK9Q8TD19 979 aa8.69□□□□□ -1.02
NIPBL-208ENST00000514335 MRRFQ96E11 262 aaKnown RBP8.69□□□□□ -1.02
NIPBL-208ENST00000514335 CFAP53Q96M91 514 aa8.69□□□□□ -1.02
NIPBL-208ENST00000514335 FAM117AQ9C073 453 aa8.69□□□□□ -1.02
NIPBL-208ENST00000514335 PCDHGA4Q9Y5G9 962 aa8.69□□□□□ -1.02
NIPBL-208ENST00000514335 OFD1O75665 1012 aa8.69□□□□□ -1.02
NIPBL-208ENST00000514335 ECM2O94769 699 aaPredicted RBP8.69□□□□□ -1.02
NIPBL-208ENST00000514335 PSMC1P62191 440 aaKnown RBP8.69□□□□□ -1.02
NIPBL-208ENST00000514335 SLC7A5Q01650 507 aa8.69□□□□□ -1.02
NIPBL-208ENST00000514335 PSME1Q06323 249 aa8.69□□□□□ -1.02
NIPBL-208ENST00000514335 ATP2B3Q16720 1220 aa8.69□□□□□ -1.02
NIPBL-208ENST00000514335 SNRNP27Q8WVK2 155 aaKnown RBP8.69□□□□□ -1.02
NIPBL-208ENST00000514335 UQCRHLA0A096LP55 91 aa8.68□□□□□ -1.02
NIPBL-208ENST00000514335 DYNC1I1O14576 645 aa8.68□□□□□ -1.02
NIPBL-208ENST00000514335 UQCRHP07919 91 aa8.68□□□□□ -1.02
NIPBL-208ENST00000514335 INO80BQ9C086 356 aaPredicted RBP8.68□□□□□ -1.02
NIPBL-208ENST00000514335 MKS1Q9NXB0 559 aa8.68□□□□□ -1.02
NIPBL-208ENST00000514335 RABL2AQ9UBK7 228 aaPredicted RBP8.68□□□□□ -1.02
NIPBL-208ENST00000514335 ABCF2Q9UG63 623 aa8.68□□□□□ -1.02
NIPBL-208ENST00000514335 IQGAP3Q86VI3 1631 aa8.68□□□□□ -1.02
NIPBL-208ENST00000514335 XRCC6P12956 609 aaKnown RBP eCLIP8.68□□□□□ -1.02
NIPBL-208ENST00000514335 XBP1P17861 261 aa8.68□□□□□ -1.02
NIPBL-208ENST00000514335 EIF5P55010 431 aaKnown RBP8.68□□□□□ -1.02
NIPBL-208ENST00000514335 LONRF1Q17RB8 773 aa8.68□□□□□ -1.02
NIPBL-208ENST00000514335 ZNF394Q53GI3 561 aa8.68□□□□□ -1.02
NIPBL-208ENST00000514335 KCNV1Q6PIU1 500 aa8.68□□□□□ -1.02
NIPBL-208ENST00000514335 YIPF2Q9BWQ6 316 aa8.68□□□□□ -1.02
NIPBL-208ENST00000514335 KCNA2P16389 499 aa8.67□□□□□ -1.02
NIPBL-208ENST00000514335 HDLBPQ00341 1268 aaKnown RBP8.67□□□□□ -1.02
NIPBL-208ENST00000514335 BMS1Q14692 1282 aaKnown RBP8.67□□□□□ -1.02
NIPBL-208ENST00000514335 CTR9Q6PD62 1173 aa8.67□□□□□ -1.02
NIPBL-208ENST00000514335 SREK1Q8WXA9 508 aaKnown RBP8.67□□□□□ -1.02
NIPBL-208ENST00000514335 TRERF1Q96PN7 1200 aa8.67□□□□□ -1.02
NIPBL-208ENST00000514335 RWDD1Q9H446 243 aaPredicted RBP8.67□□□□□ -1.02
NIPBL-208ENST00000514335 CHGAP10645 457 aaKnown RBP8.67□□□□□ -1.02
NIPBL-208ENST00000514335 INF2Q27J81 1249 aa8.67□□□□□ -1.02
NIPBL-208ENST00000514335 RPRD2Q5VT52 1461 aaKnown RBP8.67□□□□□ -1.02
NIPBL-208ENST00000514335 PANK2Q9BZ23 570 aa8.67□□□□□ -1.02
NIPBL-208ENST00000514335 MUC3BQ9H195 1237 aa8.67□□□□□ -1.02
NIPBL-208ENST00000514335 CHPF2Q9P2E5 772 aa8.67□□□□□ -1.02
NIPBL-208ENST00000514335 DCCP43146 1447 aa8.67□□□□□ -1.02
NIPBL-208ENST00000514335 PPFIA2O75334 1257 aa8.67□□□□□ -1.02
NIPBL-208ENST00000514335 TRPC1P48995 793 aa8.67□□□□□ -1.02
NIPBL-208ENST00000514335 TTC19Q6DKK2 380 aaPredicted RBP8.67□□□□□ -1.02
NIPBL-208ENST00000514335 ITM2BQ9Y287 266 aa8.67□□□□□ -1.02
NIPBL-208ENST00000514335 TNKS1BP1Q9C0C2 1729 aaKnown RBP8.66□□□□□ -1.02
NIPBL-208ENST00000514335 TSNAXIP1Q2TAA8 658 aa8.66□□□□□ -1.02
NIPBL-208ENST00000514335 EFCAB6Q5THR3 1501 aa8.66□□□□□ -1.02
NIPBL-208ENST00000514335 BOLA2-SMG1P6H3BVE0 249 aa8.66□□□□□ -1.02
NIPBL-208ENST00000514335 PTK7Q13308 1070 aa8.66□□□□□ -1.02
NIPBL-208ENST00000514335 CC2D1AQ6P1N0 951 aaPredicted RBP8.66□□□□□ -1.02
NIPBL-208ENST00000514335 LARP6Q9BRS8 491 aaKnown RBP8.66□□□□□ -1.02
NIPBL-208ENST00000514335 PRR12Q9ULL5 1215 aa8.66□□□□□ -1.02
NIPBL-208ENST00000514335 KNSTRNQ9Y448 316 aa8.66□□□□□ -1.02
NIPBL-208ENST00000514335 TIAM1Q13009 1591 aa8.66□□□□□ -1.02
NIPBL-208ENST00000514335 ANKRD18BA2A2Z9 1011 aa8.65□□□□□ -1.02
NIPBL-208ENST00000514335 CCP110O43303 1012 aa8.65□□□□□ -1.02
NIPBL-208ENST00000514335 KINO60870 393 aaKnown RBP8.65□□□□□ -1.02
NIPBL-208ENST00000514335 FRAT2O75474 233 aaPredicted RBP8.65□□□□□ -1.02
NIPBL-208ENST00000514335 RRM1P23921 792 aa8.65□□□□□ -1.02
NIPBL-208ENST00000514335 PEX19P40855 299 aa8.65□□□□□ -1.02
NIPBL-208ENST00000514335 MAGEA8P43361 318 aa8.65□□□□□ -1.02
NIPBL-208ENST00000514335 PDZRN4Q6ZMN7 1036 aaPredicted RBP8.65□□□□□ -1.02
NIPBL-208ENST00000514335 KIF2CQ99661 725 aa8.65□□□□□ -1.02
NIPBL-208ENST00000514335 ARHGAP35Q9NRY4 1499 aa8.65□□□□□ -1.02
NIPBL-208ENST00000514335 FSD2A1L4K1 749 aa8.65□□□□□ -1.03
NIPBL-208ENST00000514335 CBFA2T2O43439 604 aa8.65□□□□□ -1.03
NIPBL-208ENST00000514335 VASPP50552 380 aaPredicted RBP8.65□□□□□ -1.03
NIPBL-208ENST00000514335 SAPCD2Q86UD0 394 aa8.65□□□□□ -1.03
NIPBL-208ENST00000514335 STAG2Q8N3U4 1231 aa8.65□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 52.5 ms