RNA–Protein interactions for RNA: ENST00000514313.1

NUP54-215, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-215ENST00000514313 CHMP3Q9Y3E7 222 aa12.08□□□□□ -0.48
NUP54-215ENST00000514313 EML1O00423 815 aa12.07□□□□□ -0.48
NUP54-215ENST00000514313 COL19A1Q14993 1142 aa12.07□□□□□ -0.48
NUP54-215ENST00000514313 ZDHHC1Q8WTX9 485 aa12.07□□□□□ -0.48
NUP54-215ENST00000514313 NGLY1Q96IV0 654 aa12.07□□□□□ -0.48
NUP54-215ENST00000514313 EAPPQ56P03 285 aaPredicted RBP12.06□□□□□ -0.48
NUP54-215ENST00000514313 FAM26DQ5JW98 314 aa12.06□□□□□ -0.48
NUP54-215ENST00000514313 IFFO2Q5TF58 517 aa12.06□□□□□ -0.48
NUP54-215ENST00000514313 Q6ZVU0 165 aa12.06□□□□□ -0.48
NUP54-215ENST00000514313 ZNF295-AS1Q8N0V1 137 aa12.06□□□□□ -0.48
NUP54-215ENST00000514313 AGBL1Q96MI9 1066 aa12.06□□□□□ -0.48
NUP54-215ENST00000514313 CCDC87Q9NVE4 849 aa12.06□□□□□ -0.48
NUP54-215ENST00000514313 BRPF3Q9ULD4 1205 aa12.06□□□□□ -0.48
NUP54-215ENST00000514313 SERTM1A2A2V5 107 aa12.05□□□□□ -0.48
NUP54-215ENST00000514313 FZD6O60353 706 aa12.05□□□□□ -0.48
NUP54-215ENST00000514313 ZIC2O95409 532 aaPredicted RBP12.05□□□□□ -0.48
NUP54-215ENST00000514313 P4HBP07237 508 aaKnown RBP12.05□□□□□ -0.48
NUP54-215ENST00000514313 PTGIRP43119 386 aa12.05□□□□□ -0.48
NUP54-215ENST00000514313 CENPCQ03188 943 aa12.05□□□□□ -0.48
NUP54-215ENST00000514313 TEAD4Q15561 434 aa12.05□□□□□ -0.48
NUP54-215ENST00000514313 ZNF598Q86UK7 904 aaKnown RBP12.05□□□□□ -0.48
NUP54-215ENST00000514313 KLF16Q9BXK1 252 aaPredicted RBP12.05□□□□□ -0.48
NUP54-215ENST00000514313 ZFAND3Q9H8U3 227 aa12.05□□□□□ -0.48
NUP54-215ENST00000514313 MEN1O00255 615 aa12.04□□□□□ -0.48
NUP54-215ENST00000514313 HIRAP54198 1017 aaPredicted RBP12.04□□□□□ -0.48
NUP54-215ENST00000514313 ALKBH2Q6NS38 261 aa12.04□□□□□ -0.48
NUP54-215ENST00000514313 SNIP1Q8TAD8 396 aaKnown RBP12.04□□□□□ -0.48
NUP54-215ENST00000514313 IGSF3O75054 1194 aa12.03□□□□□ -0.48
NUP54-215ENST00000514313 NOS2P35228 1153 aa12.03□□□□□ -0.48
NUP54-215ENST00000514313 AAMPQ13685 434 aa12.03□□□□□ -0.48
NUP54-215ENST00000514313 ABTB2Q8N961 1025 aa12.03□□□□□ -0.48
NUP54-215ENST00000514313 CABP1Q9NZU7 370 aa12.03□□□□□ -0.48
NUP54-215ENST00000514313 ZNF232Q9UNY5 417 aa12.03□□□□□ -0.48
NUP54-215ENST00000514313 ZBTB39O15060 712 aa12.02□□□□□ -0.49
NUP54-215ENST00000514313 WDR4P57081 412 aaKnown RBP12.02□□□□□ -0.49
NUP54-215ENST00000514313 RELBQ01201 579 aa12.02□□□□□ -0.49
NUP54-215ENST00000514313 ALDH16A1Q8IZ83 802 aa12.02□□□□□ -0.49
NUP54-215ENST00000514313 NLRP3Q96P20 1036 aa12.02□□□□□ -0.49
NUP54-215ENST00000514313 HCN4Q9Y3Q4 1203 aa12.02□□□□□ -0.49
NUP54-215ENST00000514313 PARP3Q9Y6F1 533 aa12.02□□□□□ -0.49
NUP54-215ENST00000514313 J3QL48 77 aa12.01□□□□□ -0.49
NUP54-215ENST00000514313 TREHO43280 583 aa12.01□□□□□ -0.49
NUP54-215ENST00000514313 TIMP2P16035 220 aa12.01□□□□□ -0.49
NUP54-215ENST00000514313 VAMP1P23763 118 aa12.01□□□□□ -0.49
NUP54-215ENST00000514313 FMR1Q06787 632 aaKnown RBP eCLIP12.01□□□□□ -0.49
NUP54-215ENST00000514313 ATCAYQ86WG3 371 aa12.01□□□□□ -0.49
NUP54-215ENST00000514313 TMC1Q8TDI8 760 aa12.01□□□□□ -0.49
NUP54-215ENST00000514313 L3MBTL2Q969R5 705 aa12.01□□□□□ -0.49
NUP54-215ENST00000514313 CITED4Q96RK1 184 aa12.01□□□□□ -0.49
NUP54-215ENST00000514313 BRD2P25440 801 aaKnown RBP12□□□□□ -0.49
NUP54-215ENST00000514313 PPARGC1BQ86YN6 1023 aaKnown RBP12□□□□□ -0.49
NUP54-215ENST00000514313 ZNF395Q9H8N7 513 aaPredicted RBP12□□□□□ -0.49
NUP54-215ENST00000514313 GPR182O15218 404 aa11.99□□□□□ -0.49
NUP54-215ENST00000514313 IGHA2P01877 340 aa11.99□□□□□ -0.49
NUP54-215ENST00000514313 DGKZQ13574 1117 aa11.99□□□□□ -0.49
NUP54-215ENST00000514313 RTN1Q16799 776 aa11.99□□□□□ -0.49
NUP54-215ENST00000514313 ZSCAN10Q96SZ4 725 aaPredicted RBP11.99□□□□□ -0.49
NUP54-215ENST00000514313 FAM129BQ96TA1 746 aa11.99□□□□□ -0.49
NUP54-215ENST00000514313 PRKD2Q9BZL6 878 aa11.99□□□□□ -0.49
NUP54-215ENST00000514313 PHACTR1Q9C0D0 580 aa11.99□□□□□ -0.49
NUP54-215ENST00000514313 RECKO95980 971 aa11.98□□□□□ -0.49
NUP54-215ENST00000514313 TCF3P15923 654 aa11.98□□□□□ -0.49
NUP54-215ENST00000514313 DSC3Q14574 896 aa11.98□□□□□ -0.49
NUP54-215ENST00000514313 ETFBKMTQ8IXQ9 262 aa11.98□□□□□ -0.49
NUP54-215ENST00000514313 KLK14Q9P0G3 267 aa11.98□□□□□ -0.49
NUP54-215ENST00000514313 MMRN1Q13201 1228 aa11.97□□□□□ -0.49
NUP54-215ENST00000514313 DMRTB1Q96MA1 342 aa11.97□□□□□ -0.49
NUP54-215ENST00000514313 NIFKQ9BYG3 293 aaKnown RBP11.97□□□□□ -0.49
NUP54-215ENST00000514313 A0A0G2JS52 829 aa11.96□□□□□ -0.49
NUP54-215ENST00000514313 TTC24A2A3L6 582 aaPredicted RBP11.96□□□□□ -0.49
NUP54-215ENST00000514313 C11orf91Q3C1V1 193 aa11.96□□□□□ -0.49
NUP54-215ENST00000514313 TMEM214Q6NUQ4 689 aaKnown RBP11.96□□□□□ -0.49
NUP54-215ENST00000514313 RHBDD1Q8TEB9 315 aa11.96□□□□□ -0.49
NUP54-215ENST00000514313 GDF9O60383 454 aa11.95□□□□□ -0.5
NUP54-215ENST00000514313 MAPK8P45983 427 aa11.95□□□□□ -0.5
NUP54-215ENST00000514313 EHHADHQ08426 723 aa11.95□□□□□ -0.5
NUP54-215ENST00000514313 MEIOBQ8N635 442 aa11.95□□□□□ -0.5
NUP54-215ENST00000514313 POLIQ9UNA4 740 aa11.95□□□□□ -0.5
NUP54-215ENST00000514313 TNFRSF10AO00220 468 aa11.94□□□□□ -0.5
NUP54-215ENST00000514313 TXLNAP40222 546 aa11.94□□□□□ -0.5
NUP54-215ENST00000514313 PDE3BQ13370 1112 aa11.94□□□□□ -0.5
NUP54-215ENST00000514313 CYP4X1Q8N118 509 aa11.94□□□□□ -0.5
NUP54-215ENST00000514313 SMPD1P17405 629 aa11.93□□□□□ -0.5
NUP54-215ENST00000514313 ZAP70P43403 619 aa11.93□□□□□ -0.5
NUP54-215ENST00000514313 GJD3Q8N144 294 aa11.93□□□□□ -0.5
NUP54-215ENST00000514313 EDEM1Q92611 657 aa11.93□□□□□ -0.5
NUP54-215ENST00000514313 IFT43Q96FT9 208 aa11.93□□□□□ -0.5
NUP54-215ENST00000514313 TOR4AQ9NXH8 423 aa11.93□□□□□ -0.5
NUP54-215ENST00000514313 V9GY48 417 aaPredicted RBP11.93□□□□□ -0.5
NUP54-215ENST00000514313 LDHBP07195 334 aaKnown RBP11.92□□□□□ -0.5
NUP54-215ENST00000514313 MZF1P28698 734 aaPredicted RBP11.92□□□□□ -0.5
NUP54-215ENST00000514313 GTF2E1P29083 439 aaPredicted RBP11.92□□□□□ -0.5
NUP54-215ENST00000514313 PLA2G4AP47712 749 aa11.92□□□□□ -0.5
NUP54-215ENST00000514313 PLCB3Q01970 1234 aa11.92□□□□□ -0.5
NUP54-215ENST00000514313 DNM1Q05193 864 aaKnown RBP11.92□□□□□ -0.5
NUP54-215ENST00000514313 ALKBH8Q96BT7 664 aaKnown RBP11.92□□□□□ -0.5
NUP54-215ENST00000514313 PDGFAP04085 211 aa11.91□□□□□ -0.5
NUP54-215ENST00000514313 TSNAXIP1Q2TAA8 658 aa11.91□□□□□ -0.5
NUP54-215ENST00000514313 C1orf53Q5VUE5 145 aa11.91□□□□□ -0.5
NUP54-215ENST00000514313 GRIP2Q9C0E4 1043 aa11.91□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms