RNA–Protein interactions for RNA: ENST00000513989.5

NEDD9-214, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 4

Gene NEDD9, Length 587 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-214ENST00000513989 KDM6AO15550 1401 aaPredicted RBP13.13□□□□□ -0.31
NEDD9-214ENST00000513989 CEP350Q5VT06 3117 aa13.13□□□□□ -0.31
NEDD9-214ENST00000513989 SMIM5Q71RC9 77 aa13.12□□□□□ -0.31
NEDD9-214ENST00000513989 KLHL34Q8N239 644 aa13.12□□□□□ -0.31
NEDD9-214ENST00000513989 FMNL2Q96PY5 1086 aa13.12□□□□□ -0.31
NEDD9-214ENST00000513989 MBIPQ9NS73 344 aa13.12□□□□□ -0.31
NEDD9-214ENST00000513989 C4AP0C0L4 1744 aa13.12□□□□□ -0.31
NEDD9-214ENST00000513989 YBX3P16989 372 aaKnown RBP eCLIP13.11□□□□□ -0.31
NEDD9-214ENST00000513989 SLC39A6Q13433 755 aa13.11□□□□□ -0.31
NEDD9-214ENST00000513989 CDCA7LQ96GN5 454 aa13.11□□□□□ -0.31
NEDD9-214ENST00000513989 TEX13AQ9BXU3 409 aaPredicted RBP13.11□□□□□ -0.31
NEDD9-214ENST00000513989 ATG3Q9NT62 314 aa13.11□□□□□ -0.31
NEDD9-214ENST00000513989 ASAP1Q9ULH1 1129 aa13.11□□□□□ -0.31
NEDD9-214ENST00000513989 SCN11AQ9UI33 1791 aa13.11□□□□□ -0.31
NEDD9-214ENST00000513989 PTCD1O75127 700 aaKnown RBP13.1□□□□□ -0.31
NEDD9-214ENST00000513989 SNRPA1P09661 255 aaKnown RBP13.1□□□□□ -0.31
NEDD9-214ENST00000513989 EIF4A1P60842 406 aaKnown RBP13.1□□□□□ -0.31
NEDD9-214ENST00000513989 GPR162Q16538 588 aa13.1□□□□□ -0.31
NEDD9-214ENST00000513989 TRMT2AQ8IZ69 625 aaKnown RBP13.1□□□□□ -0.31
NEDD9-214ENST00000513989 LINC00116Q8NCU8 138 aa13.1□□□□□ -0.31
NEDD9-214ENST00000513989 RBM42Q9BTD8 480 aaKnown RBP13.1□□□□□ -0.31
NEDD9-214ENST00000513989 CT47B1P0C2W7 299 aaPredicted RBP13.09□□□□□ -0.31
NEDD9-214ENST00000513989 BRCA1P38398 1863 aaKnown RBP13.09□□□□□ -0.31
NEDD9-214ENST00000513989 ITPK1Q13572 414 aa13.09□□□□□ -0.31
NEDD9-214ENST00000513989 VSIG10Q8N0Z9 540 aa13.09□□□□□ -0.31
NEDD9-214ENST00000513989 TSR2Q969E8 191 aaKnown RBP13.09□□□□□ -0.31
NEDD9-214ENST00000513989 SPINK5Q9NQ38 1064 aaPredicted RBP13.09□□□□□ -0.31
NEDD9-214ENST00000513989 N4BP2Q86UW6 1770 aaPredicted RBP13.09□□□□□ -0.31
NEDD9-214ENST00000513989 SOS1Q07889 1333 aaPredicted RBP13.09□□□□□ -0.31
NEDD9-214ENST00000513989 FANCIQ9NVI1 1328 aa13.09□□□□□ -0.31
NEDD9-214ENST00000513989 TJP1Q07157 1748 aa13.08□□□□□ -0.32
NEDD9-214ENST00000513989 LOC102724428A0A0B4J2F2 783 aa13.08□□□□□ -0.32
NEDD9-214ENST00000513989 KCNQ3O43525 872 aa13.08□□□□□ -0.32
NEDD9-214ENST00000513989 STARD3NLO95772 234 aa13.08□□□□□ -0.32
NEDD9-214ENST00000513989 SIK1P57059 783 aa13.08□□□□□ -0.32
NEDD9-214ENST00000513989 DUSP27Q5VZP5 1158 aa13.08□□□□□ -0.32
NEDD9-214ENST00000513989 CICQ96RK0 1608 aaPredicted RBP13.08□□□□□ -0.32
NEDD9-214ENST00000513989 HOXB7P09629 217 aa13.07□□□□□ -0.32
NEDD9-214ENST00000513989 EXOSC9Q06265 439 aaKnown RBP13.07□□□□□ -0.32
NEDD9-214ENST00000513989 ZNF428Q96B54 188 aa13.07□□□□□ -0.32
NEDD9-214ENST00000513989 ZNF496Q96IT1 587 aaPredicted RBP13.07□□□□□ -0.32
NEDD9-214ENST00000513989 SLC4A9Q96Q91 983 aa13.07□□□□□ -0.32
NEDD9-214ENST00000513989 ADAMTS7Q9UKP4 1686 aa13.06□□□□□ -0.32
NEDD9-214ENST00000513989 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.06□□□□□ -0.32
NEDD9-214ENST00000513989 GIGYF1O75420 1035 aaPredicted RBP13.06□□□□□ -0.32
NEDD9-214ENST00000513989 ATP6V1AP38606 617 aa13.06□□□□□ -0.32
NEDD9-214ENST00000513989 TWISTNBQ3B726 338 aaPredicted RBP13.06□□□□□ -0.32
NEDD9-214ENST00000513989 PELP1Q8IZL8 1130 aaKnown RBP13.06□□□□□ -0.32
NEDD9-214ENST00000513989 ELL2O00472 640 aaPredicted RBP13.05□□□□□ -0.32
NEDD9-214ENST00000513989 PHF14O94880 888 aa13.05□□□□□ -0.32
NEDD9-214ENST00000513989 CENPBP07199 599 aaPredicted RBP13.05□□□□□ -0.32
NEDD9-214ENST00000513989 NPM2Q86SE8 214 aaKnown RBP13.05□□□□□ -0.32
NEDD9-214ENST00000513989 C8orf58Q8NAV2 365 aa13.05□□□□□ -0.32
NEDD9-214ENST00000513989 FLAD1Q8NFF5 587 aa13.05□□□□□ -0.32
NEDD9-214ENST00000513989 AK7Q96M32 723 aa13.05□□□□□ -0.32
NEDD9-214ENST00000513989 EIF2S2P20042 333 aaKnown RBP13.04□□□□□ -0.32
NEDD9-214ENST00000513989 CCDC30Q5VVM6 783 aa13.04□□□□□ -0.32
NEDD9-214ENST00000513989 CD2APQ9Y5K6 639 aa13.04□□□□□ -0.32
NEDD9-214ENST00000513989 HEG1Q9ULI3 1381 aa13.04□□□□□ -0.32
NEDD9-214ENST00000513989 MRC1P22897 1456 aa13.04□□□□□ -0.32
NEDD9-214ENST00000513989 SSFA2P28290 1259 aa13.03□□□□□ -0.32
NEDD9-214ENST00000513989 POTEDQ86YR6 584 aa13.03□□□□□ -0.32
NEDD9-214ENST00000513989 STK31Q9BXU1 1019 aa13.03□□□□□ -0.32
NEDD9-214ENST00000513989 VAMP4O75379 141 aa13.02□□□□□ -0.33
NEDD9-214ENST00000513989 C1QTNF8P60827 252 aa13.02□□□□□ -0.33
NEDD9-214ENST00000513989 HDGFL1Q5TGJ6 251 aa13.02□□□□□ -0.33
NEDD9-214ENST00000513989 ADCY9O60503 1353 aa13.02□□□□□ -0.33
NEDD9-214ENST00000513989 GNPATO15228 680 aa13.01□□□□□ -0.33
NEDD9-214ENST00000513989 KRT24Q2M2I5 525 aa13.01□□□□□ -0.33
NEDD9-214ENST00000513989 ALDH1L2Q3SY69 923 aa13.01□□□□□ -0.33
NEDD9-214ENST00000513989 TSPYL6Q8N831 410 aa13.01□□□□□ -0.33
NEDD9-214ENST00000513989 DBF4Q9UBU7 674 aaPredicted RBP13.01□□□□□ -0.33
NEDD9-214ENST00000513989 ARFGEF1Q9Y6D6 1849 aa13.01□□□□□ -0.33
NEDD9-214ENST00000513989 UBR2Q8IWV8 1755 aa13□□□□□ -0.33
NEDD9-214ENST00000513989 PXDNLA1KZ92 1463 aa13□□□□□ -0.33
NEDD9-214ENST00000513989 ATP10DQ9P241 1426 aa13□□□□□ -0.33
NEDD9-214ENST00000513989 RC3H1Q5TC82 1133 aaKnown RBP13□□□□□ -0.33
NEDD9-214ENST00000513989 DNAJC10Q8IXB1 793 aa13□□□□□ -0.33
NEDD9-214ENST00000513989 USP16Q9Y5T5 823 aa13□□□□□ -0.33
NEDD9-214ENST00000513989 ERBB4Q15303 1308 aa12.99□□□□□ -0.33
NEDD9-214ENST00000513989 GRIN3BO60391 1043 aa12.99□□□□□ -0.33
NEDD9-214ENST00000513989 CYP19A1P11511 503 aaPredicted RBP12.99□□□□□ -0.33
NEDD9-214ENST00000513989 NECTIN2Q92692 538 aa12.99□□□□□ -0.33
NEDD9-214ENST00000513989 AFDNP55196 1824 aaKnown RBP12.99□□□□□ -0.33
NEDD9-214ENST00000513989 SLC4A2P04920 1241 aa12.98□□□□□ -0.33
NEDD9-214ENST00000513989 DDX21Q9NR30 783 aaKnown RBP eCLIP12.98□□□□□ -0.33
NEDD9-214ENST00000513989 HYPKQ9NX55 129 aa12.98□□□□□ -0.33
NEDD9-214ENST00000513989 RCAN3Q9UKA8 241 aa12.98□□□□□ -0.33
NEDD9-214ENST00000513989 WWC3Q9ULE0 1092 aa12.98□□□□□ -0.33
NEDD9-214ENST00000513989 SIPA1L3O60292 1781 aaPredicted RBP12.98□□□□□ -0.33
NEDD9-214ENST00000513989 C10orf71Q711Q0 1435 aa12.97□□□□□ -0.33
NEDD9-214ENST00000513989 CNTNAP4Q9C0A0 1308 aa12.97□□□□□ -0.33
NEDD9-214ENST00000513989 PRAMEF22A3QJZ6 481 aa12.97□□□□□ -0.33
NEDD9-214ENST00000513989 IPO8O15397 1037 aaKnown RBP12.97□□□□□ -0.33
NEDD9-214ENST00000513989 MMP10P09238 476 aa12.97□□□□□ -0.33
NEDD9-214ENST00000513989 CRKLP46109 303 aaKnown RBP12.97□□□□□ -0.33
NEDD9-214ENST00000513989 RARSP54136 660 aaKnown RBP12.97□□□□□ -0.33
NEDD9-214ENST00000513989 GOLGA6L2Q8N9W4 650 aaPredicted RBP12.97□□□□□ -0.33
NEDD9-214ENST00000513989 SMC4Q9NTJ3 1288 aa12.97□□□□□ -0.33
NEDD9-214ENST00000513989 CCDC87Q9NVE4 849 aa12.97□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 83.6 ms