RNA–Protein interactions for RNA: ENST00000504627.1

SQSTM1-209, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 602 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-209ENST00000504627 A0A0G2JLW4 131 aa23.9■■□□□ 1.42
SQSTM1-209ENST00000504627 BTBD11A6QL63 1104 aa23.9■■□□□ 1.42
SQSTM1-209ENST00000504627 NEFMP07197 916 aa23.9■■□□□ 1.42
SQSTM1-209ENST00000504627 TEX13AQ9BXU3 409 aaPredicted RBP23.9■■□□□ 1.42
SQSTM1-209ENST00000504627 C10orf71Q711Q0 1435 aa23.9■■□□□ 1.42
SQSTM1-209ENST00000504627 COL15A1P39059 1388 aa23.9■■□□□ 1.42
SQSTM1-209ENST00000504627 CEMIPQ8WUJ3 1361 aa23.9■■□□□ 1.42
SQSTM1-209ENST00000504627 FMNL2Q96PY5 1086 aa23.89■■□□□ 1.41
SQSTM1-209ENST00000504627 HEG1Q9ULI3 1381 aa23.89■■□□□ 1.41
SQSTM1-209ENST00000504627 PXDNLA1KZ92 1463 aa23.88■■□□□ 1.41
SQSTM1-209ENST00000504627 PRKRIP1Q9H875 184 aaPredicted RBP23.88■■□□□ 1.41
SQSTM1-209ENST00000504627 NARFQ9UHQ1 456 aa23.88■■□□□ 1.41
SQSTM1-209ENST00000504627 BCS1LQ9Y276 419 aa23.88■■□□□ 1.41
SQSTM1-209ENST00000504627 DPEP1P16444 411 aa23.87■■□□□ 1.41
SQSTM1-209ENST00000504627 DDR1Q08345 913 aa23.87■■□□□ 1.41
SQSTM1-209ENST00000504627 MCM10Q7L590 875 aa23.87■■□□□ 1.41
SQSTM1-209ENST00000504627 UBR2Q8IWV8 1755 aa23.87■■□□□ 1.41
SQSTM1-209ENST00000504627 ZNF330Q9Y3S2 320 aaPredicted RBP23.86■■□□□ 1.41
SQSTM1-209ENST00000504627 KIF13BQ9NQT8 1826 aa23.85■■□□□ 1.41
SQSTM1-209ENST00000504627 POLRMTO00411 1230 aaKnown RBP23.85■■□□□ 1.41
SQSTM1-209ENST00000504627 TM4SF1P30408 202 aa23.85■■□□□ 1.41
SQSTM1-209ENST00000504627 NPM2Q86SE8 214 aaKnown RBP23.85■■□□□ 1.41
SQSTM1-209ENST00000504627 A0A087WZG4 1122 aa23.84■■□□□ 1.41
SQSTM1-209ENST00000504627 KCNQ3O43525 872 aa23.83■■□□□ 1.41
SQSTM1-209ENST00000504627 HTATSF1O43719 755 aaKnown RBP23.83■■□□□ 1.41
SQSTM1-209ENST00000504627 DCTN1Q14203 1278 aa23.83■■□□□ 1.41
SQSTM1-209ENST00000504627 RALBP1Q15311 655 aa23.83■■□□□ 1.41
SQSTM1-209ENST00000504627 SIPA1L3O60292 1781 aaPredicted RBP23.83■■□□□ 1.4
SQSTM1-209ENST00000504627 N4BP2Q86UW6 1770 aaPredicted RBP23.83■■□□□ 1.4
SQSTM1-209ENST00000504627 CCER2I3L3R5 266 aa23.82■■□□□ 1.4
SQSTM1-209ENST00000504627 GIGYF1O75420 1035 aaPredicted RBP23.82■■□□□ 1.4
SQSTM1-209ENST00000504627 EIF5P55010 431 aaKnown RBP23.82■■□□□ 1.4
SQSTM1-209ENST00000504627 NFIXQ14938 502 aa23.82■■□□□ 1.4
SQSTM1-209ENST00000504627 PNNQ9H307 717 aaKnown RBP23.81■■□□□ 1.4
SQSTM1-209ENST00000504627 PIM2Q9P1W9 311 aa23.81■■□□□ 1.4
SQSTM1-209ENST00000504627 ATP10DQ9P241 1426 aa23.8■■□□□ 1.4
SQSTM1-209ENST00000504627 A1BGP04217 495 aa23.79■■□□□ 1.4
SQSTM1-209ENST00000504627 IL6STP40189 918 aaPredicted RBP23.79■■□□□ 1.4
SQSTM1-209ENST00000504627 BICDL1Q6ZP65 573 aa23.79■■□□□ 1.4
SQSTM1-209ENST00000504627 ARHGAP27Q6ZUM4 889 aa23.79■■□□□ 1.4
SQSTM1-209ENST00000504627 BCL2L12Q9HB09 334 aa23.79■■□□□ 1.4
SQSTM1-209ENST00000504627 KIAA1551Q9HCM1 1747 aa23.79■■□□□ 1.4
SQSTM1-209ENST00000504627 SERPINB2P05120 415 aa23.78■■□□□ 1.4
SQSTM1-209ENST00000504627 KCNA3P22001 575 aa23.78■■□□□ 1.4
SQSTM1-209ENST00000504627 C1QTNF8P60827 252 aa23.78■■□□□ 1.4
SQSTM1-209ENST00000504627 TBC1D2BQ9UPU7 963 aa23.78■■□□□ 1.4
SQSTM1-209ENST00000504627 SNRPA1P09661 255 aaKnown RBP23.77■■□□□ 1.4
SQSTM1-209ENST00000504627 TAF7Q15545 349 aaPredicted RBP23.77■■□□□ 1.4
SQSTM1-209ENST00000504627 GPBP1L1Q9HC44 474 aaPredicted RBP23.77■■□□□ 1.4
SQSTM1-209ENST00000504627 USP16Q9Y5T5 823 aa23.77■■□□□ 1.4
SQSTM1-209ENST00000504627 MAPK8IP3Q9UPT6 1336 aa23.77■■□□□ 1.4
SQSTM1-209ENST00000504627 CHRNA5P30532 468 aa23.76■■□□□ 1.39
SQSTM1-209ENST00000504627 DALRD3Q5D0E6 543 aaKnown RBP23.76■■□□□ 1.39
SQSTM1-209ENST00000504627 ZNF526Q8TF50 670 aaPredicted RBP23.76■■□□□ 1.39
SQSTM1-209ENST00000504627 MYBBP1AQ9BQG0 1328 aaKnown RBP23.76■■□□□ 1.39
SQSTM1-209ENST00000504627 PLEKHF1Q96S99 279 aa23.75■■□□□ 1.39
SQSTM1-209ENST00000504627 NFE2L2Q16236 605 aa23.74■■□□□ 1.39
SQSTM1-209ENST00000504627 ADCY9O60503 1353 aa23.74■■□□□ 1.39
SQSTM1-209ENST00000504627 PRAMEF22A3QJZ6 481 aa23.73■■□□□ 1.39
SQSTM1-209ENST00000504627 TBC1D9BQ66K14 1250 aa23.73■■□□□ 1.39
SQSTM1-209ENST00000504627 MIS18AQ9NYP9 233 aa23.73■■□□□ 1.39
SQSTM1-209ENST00000504627 PIP4K2AP48426 406 aaPredicted RBP23.72■■□□□ 1.39
SQSTM1-209ENST00000504627 DZIP3Q86Y13 1208 aaKnown RBP23.72■■□□□ 1.39
SQSTM1-209ENST00000504627 PNISRQ8TF01 805 aaKnown RBP23.72■■□□□ 1.39
SQSTM1-209ENST00000504627 NPHP1O15259 732 aa23.7■■□□□ 1.38
SQSTM1-209ENST00000504627 BRCA1P38398 1863 aaKnown RBP23.69■■□□□ 1.38
SQSTM1-209ENST00000504627 AFDNP55196 1824 aaKnown RBP23.69■■□□□ 1.38
SQSTM1-209ENST00000504627 SENP3-EIF4A1A0A087X0R7 540 aa23.69■■□□□ 1.38
SQSTM1-209ENST00000504627 CAMTA2O94983 1202 aa23.69■■□□□ 1.38
SQSTM1-209ENST00000504627 SETDB2Q96T68 719 aa23.69■■□□□ 1.38
SQSTM1-209ENST00000504627 CARMIL3Q8ND23 1372 aa23.68■■□□□ 1.38
SQSTM1-209ENST00000504627 H0YIN7 160 aa23.68■■□□□ 1.38
SQSTM1-209ENST00000504627 C2CD5Q86YS7 1000 aa23.68■■□□□ 1.38
SQSTM1-209ENST00000504627 THUMPD2Q9BTF0 503 aaKnown RBP23.68■■□□□ 1.38
SQSTM1-209ENST00000504627 NRXN2Q9P2S2 1712 aa23.66■■□□□ 1.38
SQSTM1-209ENST00000504627 SCN7AQ01118 1682 aa23.66■■□□□ 1.38
SQSTM1-209ENST00000504627 DLG5Q8TDM6 1919 aa23.65■■□□□ 1.38
SQSTM1-209ENST00000504627 C9orf131Q5VYM1 1079 aa23.65■■□□□ 1.38
SQSTM1-209ENST00000504627 ZNF652Q9Y2D9 606 aa23.65■■□□□ 1.38
SQSTM1-209ENST00000504627 ARFGEF1Q9Y6D6 1849 aa23.65■■□□□ 1.38
SQSTM1-209ENST00000504627 PDE6BP35913 854 aa23.64■■□□□ 1.37
SQSTM1-209ENST00000504627 RIPK4P57078 832 aa23.64■■□□□ 1.37
SQSTM1-209ENST00000504627 PRR5LQ6MZQ0 368 aa23.64■■□□□ 1.37
SQSTM1-209ENST00000504627 CCDC24Q8N4L8 307 aa23.64■■□□□ 1.37
SQSTM1-209ENST00000504627 TTLL6Q8N841 843 aa23.64■■□□□ 1.37
SQSTM1-209ENST00000504627 CNBD1Q8NA66 436 aa23.64■■□□□ 1.37
SQSTM1-209ENST00000504627 BRIP1Q9BX63 1249 aa23.64■■□□□ 1.37
SQSTM1-209ENST00000504627 NBPF26B4DH59 902 aa23.63■■□□□ 1.37
SQSTM1-209ENST00000504627 NBPF10Q6P3W6 841 aaKnown RBP23.63■■□□□ 1.37
SQSTM1-209ENST00000504627 CLEC4GQ6UXB4 293 aa23.63■■□□□ 1.37
SQSTM1-209ENST00000504627 NBPF15Q8N660 670 aa23.63■■□□□ 1.37
SQSTM1-209ENST00000504627 EIF4A1P60842 406 aaKnown RBP23.62■■□□□ 1.37
SQSTM1-209ENST00000504627 ST5P78524 1137 aa23.62■■□□□ 1.37
SQSTM1-209ENST00000504627 WDR43Q15061 677 aaKnown RBP eCLIP23.62■■□□□ 1.37
SQSTM1-209ENST00000504627 ZNF622Q969S3 477 aaKnown RBP eCLIP23.62■■□□□ 1.37
SQSTM1-209ENST00000504627 PDZRN3Q9UPQ7 1066 aa23.62■■□□□ 1.37
SQSTM1-209ENST00000504627 MRS2Q9HD23 443 aa23.61■■□□□ 1.37
SQSTM1-209ENST00000504627 RNF181Q9P0P0 153 aa23.61■■□□□ 1.37
SQSTM1-209ENST00000504627 LMOD3Q0VAK6 560 aa23.6■■□□□ 1.37
SQSTM1-209ENST00000504627 NBPF5PQ86XG9 351 aaPredicted RBP23.6■■□□□ 1.37
Retrieved 100 of 20,778 RNA–protein pairs in 226.4 ms