RNA–Protein interactions for RNA: ENST00000498814.1

CPNE1-228, Transcript of copine 1, humanhuman

TSL 3

Gene CPNE1, Length 550 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-228ENST00000498814 RPS6KA4O75676 772 aa20.29■□□□□ 0.84
CPNE1-228ENST00000498814 SSFA2P28290 1259 aa20.29■□□□□ 0.84
CPNE1-228ENST00000498814 PDGFDQ9GZP0 370 aaPredicted RBP20.29■□□□□ 0.84
CPNE1-228ENST00000498814 IL16Q14005 1332 aa20.28■□□□□ 0.84
CPNE1-228ENST00000498814 GIGYF1O75420 1035 aaPredicted RBP20.28■□□□□ 0.84
CPNE1-228ENST00000498814 AMIGO3Q86WK7 504 aa20.28■□□□□ 0.84
CPNE1-228ENST00000498814 COL23A1Q86Y22 540 aaPredicted RBP20.28■□□□□ 0.84
CPNE1-228ENST00000498814 WDR63Q8IWG1 891 aa20.28■□□□□ 0.84
CPNE1-228ENST00000498814 RTCBQ9Y3I0 505 aaKnown RBP20.28■□□□□ 0.84
CPNE1-228ENST00000498814 USP16Q9Y5T5 823 aa20.28■□□□□ 0.84
CPNE1-228ENST00000498814 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP20.27■□□□□ 0.84
CPNE1-228ENST00000498814 PRAMEF22A3QJZ6 481 aa20.27■□□□□ 0.84
CPNE1-228ENST00000498814 MBIPQ9NS73 344 aa20.27■□□□□ 0.84
CPNE1-228ENST00000498814 ADRA2BP18089 450 aa20.26■□□□□ 0.83
CPNE1-228ENST00000498814 SLC16A10Q8TF71 515 aa20.26■□□□□ 0.83
CPNE1-228ENST00000498814 PHF14O94880 888 aa20.25■□□□□ 0.83
CPNE1-228ENST00000498814 TRAPPC3LQ5T215 181 aa20.25■□□□□ 0.83
CPNE1-228ENST00000498814 ZBTB1Q9Y2K1 713 aa20.25■□□□□ 0.83
CPNE1-228ENST00000498814 C4AP0C0L4 1744 aa20.24■□□□□ 0.83
CPNE1-228ENST00000498814 SMIM5Q71RC9 77 aa20.24■□□□□ 0.83
CPNE1-228ENST00000498814 COL24A1Q17RW2 1714 aa20.24■□□□□ 0.83
CPNE1-228ENST00000498814 SOS1Q07889 1333 aaPredicted RBP20.24■□□□□ 0.83
CPNE1-228ENST00000498814 ZNF521Q96K83 1311 aa20.24■□□□□ 0.83
CPNE1-228ENST00000498814 MSH5O43196 834 aa20.23■□□□□ 0.83
CPNE1-228ENST00000498814 A1BGP04217 495 aa20.23■□□□□ 0.83
CPNE1-228ENST00000498814 MTFR1LQ9H019 292 aa20.23■□□□□ 0.83
CPNE1-228ENST00000498814 CANXP27824 592 aaKnown RBP20.22■□□□□ 0.83
CPNE1-228ENST00000498814 ARHGEF1Q92888 912 aaKnown RBP20.22■□□□□ 0.83
CPNE1-228ENST00000498814 ZBTB7AO95365 584 aa20.21■□□□□ 0.83
CPNE1-228ENST00000498814 IL6STP40189 918 aaPredicted RBP20.21■□□□□ 0.83
CPNE1-228ENST00000498814 EIF5P55010 431 aaKnown RBP20.21■□□□□ 0.83
CPNE1-228ENST00000498814 LRP5O75197 1615 aa20.2■□□□□ 0.82
CPNE1-228ENST00000498814 HOXB7P09629 217 aa20.2■□□□□ 0.82
CPNE1-228ENST00000498814 KRT24Q2M2I5 525 aa20.2■□□□□ 0.82
CPNE1-228ENST00000498814 SPON1Q9HCB6 807 aa20.2■□□□□ 0.82
CPNE1-228ENST00000498814 NBPF26B4DH59 902 aa20.19■□□□□ 0.82
CPNE1-228ENST00000498814 RFC4P35249 363 aa20.19■□□□□ 0.82
CPNE1-228ENST00000498814 NBPF10Q6P3W6 841 aaKnown RBP20.19■□□□□ 0.82
CPNE1-228ENST00000498814 NBPF15Q8N660 670 aa20.19■□□□□ 0.82
CPNE1-228ENST00000498814 TSR2Q969E8 191 aaKnown RBP20.19■□□□□ 0.82
CPNE1-228ENST00000498814 COL15A1P39059 1388 aa20.19■□□□□ 0.82
CPNE1-228ENST00000498814 DUSP27Q5VZP5 1158 aa20.18■□□□□ 0.82
CPNE1-228ENST00000498814 ATF5Q9Y2D1 282 aaPredicted RBP20.18■□□□□ 0.82
CPNE1-228ENST00000498814 ERBB4Q15303 1308 aa20.18■□□□□ 0.82
CPNE1-228ENST00000498814 A0A087WZG4 1122 aa20.17■□□□□ 0.82
CPNE1-228ENST00000498814 MYH16Q9H6N6 1097 aa20.17■□□□□ 0.82
CPNE1-228ENST00000498814 SPINK5Q9NQ38 1064 aaPredicted RBP20.17■□□□□ 0.82
CPNE1-228ENST00000498814 FANCIQ9NVI1 1328 aa20.17■□□□□ 0.82
CPNE1-228ENST00000498814 EIF2S2P20042 333 aaKnown RBP20.16■□□□□ 0.82
CPNE1-228ENST00000498814 PIP4K2AP48426 406 aaPredicted RBP20.16■□□□□ 0.82
CPNE1-228ENST00000498814 GOLGA2Q08379 1002 aa20.16■□□□□ 0.82
CPNE1-228ENST00000498814 C8orf58Q8NAV2 365 aa20.16■□□□□ 0.82
CPNE1-228ENST00000498814 USP42Q9H9J4 1324 aaKnown RBP20.16■□□□□ 0.82
CPNE1-228ENST00000498814 PTGER2P43116 358 aa20.15■□□□□ 0.82
CPNE1-228ENST00000498814 NPM2Q86SE8 214 aaKnown RBP20.15■□□□□ 0.82
CPNE1-228ENST00000498814 SGIP1Q9BQI5 828 aa20.15■□□□□ 0.82
CPNE1-228ENST00000498814 NARFQ9UHQ1 456 aa20.15■□□□□ 0.82
CPNE1-228ENST00000498814 ZPR1O75312 459 aa20.14■□□□□ 0.81
CPNE1-228ENST00000498814 GYS1P13807 737 aa20.14■□□□□ 0.81
CPNE1-228ENST00000498814 SRP68Q9UHB9 627 aaKnown RBP20.14■□□□□ 0.81
CPNE1-228ENST00000498814 ZNF330Q9Y3S2 320 aaPredicted RBP20.14■□□□□ 0.81
CPNE1-228ENST00000498814 ELL2O00472 640 aaPredicted RBP20.13■□□□□ 0.81
CPNE1-228ENST00000498814 PDIA6Q15084 440 aa20.13■□□□□ 0.81
CPNE1-228ENST00000498814 HDGFL1Q5TGJ6 251 aa20.13■□□□□ 0.81
CPNE1-228ENST00000498814 MSL1Q68DK7 614 aa20.13■□□□□ 0.81
CPNE1-228ENST00000498814 NLGN1Q8N2Q7 840 aa20.13■□□□□ 0.81
CPNE1-228ENST00000498814 CHMP4AQ9BY43 222 aa20.13■□□□□ 0.81
CPNE1-228ENST00000498814 SCN7AQ01118 1682 aa20.13■□□□□ 0.81
CPNE1-228ENST00000498814 E9PSI1 815 aa20.12■□□□□ 0.81
CPNE1-228ENST00000498814 HNRNPUQ00839 825 aaKnown RBP eCLIP20.12■□□□□ 0.81
CPNE1-228ENST00000498814 TSPYL6Q8N831 410 aa20.12■□□□□ 0.81
CPNE1-228ENST00000498814 BCORQ6W2J9 1755 aa20.12■□□□□ 0.81
CPNE1-228ENST00000498814 MYL6BP14649 208 aa20.11■□□□□ 0.81
CPNE1-228ENST00000498814 POLD1P28340 1107 aa20.11■□□□□ 0.81
CPNE1-228ENST00000498814 SLFN5Q08AF3 891 aa20.11■□□□□ 0.81
CPNE1-228ENST00000498814 USPL1Q5W0Q7 1092 aa20.11■□□□□ 0.81
CPNE1-228ENST00000498814 DZIP3Q86Y13 1208 aaKnown RBP20.11■□□□□ 0.81
CPNE1-228ENST00000498814 NECTIN2Q92692 538 aa20.11■□□□□ 0.81
CPNE1-228ENST00000498814 DDX21Q9NR30 783 aaKnown RBP eCLIP20.11■□□□□ 0.81
CPNE1-228ENST00000498814 TBC1D2BQ9UPU7 963 aa20.11■□□□□ 0.81
CPNE1-228ENST00000498814 SRCAPQ6ZRS2 3230 aa20.11■□□□□ 0.81
CPNE1-228ENST00000498814 EXOSC9Q06265 439 aaKnown RBP20.1■□□□□ 0.81
CPNE1-228ENST00000498814 TWISTNBQ3B726 338 aaPredicted RBP20.1■□□□□ 0.81
CPNE1-228ENST00000498814 LRP10Q7Z4F1 713 aa20.1■□□□□ 0.81
CPNE1-228ENST00000498814 CACNA1FO60840 1977 aa20.1■□□□□ 0.81
CPNE1-228ENST00000498814 FKBP8Q14318 412 aa20.09■□□□□ 0.81
CPNE1-228ENST00000498814 PROSER3Q2NL68 480 aa20.09■□□□□ 0.81
CPNE1-228ENST00000498814 BCL2L12Q9HB09 334 aa20.09■□□□□ 0.81
CPNE1-228ENST00000498814 CHPF2Q9P2E5 772 aa20.09■□□□□ 0.81
CPNE1-228ENST00000498814 DBF4Q9UBU7 674 aaPredicted RBP20.09■□□□□ 0.81
CPNE1-228ENST00000498814 RGL2O15211 777 aa20.08■□□□□ 0.81
CPNE1-228ENST00000498814 CAMTA2O94983 1202 aa20.08■□□□□ 0.81
CPNE1-228ENST00000498814 CCDC30Q5VVM6 783 aa20.08■□□□□ 0.81
CPNE1-228ENST00000498814 CDCA7LQ96GN5 454 aa20.08■□□□□ 0.81
CPNE1-228ENST00000498814 ARXQ96QS3 562 aa20.08■□□□□ 0.81
CPNE1-228ENST00000498814 NUP98P52948 1817 aa20.07■□□□□ 0.8
CPNE1-228ENST00000498814 ANXA1P04083 346 aa20.07■□□□□ 0.8
CPNE1-228ENST00000498814 TRMT2AQ8IZ69 625 aaKnown RBP20.07■□□□□ 0.8
CPNE1-228ENST00000498814 VAMP4O75379 141 aa20.06■□□□□ 0.8
CPNE1-228ENST00000498814 MMP10P09238 476 aa20.06■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 57.8 ms