RNA–Protein interactions for RNA: ENST00000498259.1

SF3A1-210, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 875 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-210ENST00000498259 LRP6O75581 1613 aa10.6□□□□□ -0.71
SF3A1-210ENST00000498259 MSH5O43196 834 aa10.6□□□□□ -0.71
SF3A1-210ENST00000498259 KSR2Q6VAB6 950 aa10.6□□□□□ -0.71
SF3A1-210ENST00000498259 SYTL4Q96C24 671 aaPredicted RBP10.6□□□□□ -0.71
SF3A1-210ENST00000498259 GCC1Q96CN9 775 aa10.6□□□□□ -0.71
SF3A1-210ENST00000498259 SRCIN1Q9C0H9 1055 aa10.6□□□□□ -0.71
SF3A1-210ENST00000498259 BCL9LQ86UU0 1499 aa10.6□□□□□ -0.71
SF3A1-210ENST00000498259 SIPA1L3O60292 1781 aaPredicted RBP10.6□□□□□ -0.71
SF3A1-210ENST00000498259 KDM2BQ8NHM5 1336 aa10.59□□□□□ -0.71
SF3A1-210ENST00000498259 NRAPQ86VF7 1730 aa10.59□□□□□ -0.71
SF3A1-210ENST00000498259 ALDH1L1O75891 902 aa10.59□□□□□ -0.71
SF3A1-210ENST00000498259 DNAAF4Q8WXU2 420 aa10.59□□□□□ -0.71
SF3A1-210ENST00000498259 GJD4Q96KN9 370 aaPredicted RBP10.59□□□□□ -0.71
SF3A1-210ENST00000498259 GNAI2P04899 355 aa10.58□□□□□ -0.72
SF3A1-210ENST00000498259 FAM98CQ17RN3 349 aaKnown RBP10.58□□□□□ -0.72
SF3A1-210ENST00000498259 G2E3Q7L622 706 aa10.58□□□□□ -0.72
SF3A1-210ENST00000498259 RIC3Q7Z5B4 369 aa10.58□□□□□ -0.72
SF3A1-210ENST00000498259 PIGBQ92521 554 aa10.58□□□□□ -0.72
SF3A1-210ENST00000498259 AFF2P51816 1311 aa10.58□□□□□ -0.72
SF3A1-210ENST00000498259 IBTKQ9P2D0 1353 aaPredicted RBP10.57□□□□□ -0.72
SF3A1-210ENST00000498259 PI4KAP2A4QPH2 592 aa10.57□□□□□ -0.72
SF3A1-210ENST00000498259 PTCD1O75127 700 aaKnown RBP10.57□□□□□ -0.72
SF3A1-210ENST00000498259 UBTFL1P0CB47 393 aaPredicted RBP10.57□□□□□ -0.72
SF3A1-210ENST00000498259 ZNF772Q68DY9 489 aaPredicted RBP10.57□□□□□ -0.72
SF3A1-210ENST00000498259 ANKRD13DQ6ZTN6 518 aa10.57□□□□□ -0.72
SF3A1-210ENST00000498259 PI4KAP1Q8N8J0 262 aa10.57□□□□□ -0.72
SF3A1-210ENST00000498259 LINS1Q8NG48 757 aa10.57□□□□□ -0.72
SF3A1-210ENST00000498259 TNNQ9UQP3 1299 aa10.57□□□□□ -0.72
SF3A1-210ENST00000498259 PCDHB15Q9Y5E8 787 aa10.57□□□□□ -0.72
SF3A1-210ENST00000498259 BCL9O00512 1426 aa10.57□□□□□ -0.72
SF3A1-210ENST00000498259 VIRMAQ69YN4 1812 aaKnown RBP10.56□□□□□ -0.72
SF3A1-210ENST00000498259 TNKS1BP1Q9C0C2 1729 aaKnown RBP10.56□□□□□ -0.72
SF3A1-210ENST00000498259 MYL6BP14649 208 aa10.56□□□□□ -0.72
SF3A1-210ENST00000498259 PRIM1P49642 420 aaKnown RBP10.56□□□□□ -0.72
SF3A1-210ENST00000498259 RBM42Q9BTD8 480 aaKnown RBP10.56□□□□□ -0.72
SF3A1-210ENST00000498259 PHAXQ9H814 394 aaKnown RBP10.56□□□□□ -0.72
SF3A1-210ENST00000498259 ATG3Q9NT62 314 aa10.56□□□□□ -0.72
SF3A1-210ENST00000498259 C9orf78Q9NZ63 289 aaPredicted RBP10.56□□□□□ -0.72
SF3A1-210ENST00000498259 ATP10DQ9P241 1426 aa10.56□□□□□ -0.72
SF3A1-210ENST00000498259 F6X3S4 739 aa10.55□□□□□ -0.72
SF3A1-210ENST00000498259 ONECUT3O60422 494 aaPredicted RBP10.55□□□□□ -0.72
SF3A1-210ENST00000498259 EIF5BO60841 1220 aaKnown RBP10.55□□□□□ -0.72
SF3A1-210ENST00000498259 COPS6Q7L5N1 327 aa10.55□□□□□ -0.72
SF3A1-210ENST00000498259 MARCH10Q8NA82 808 aaPredicted RBP10.55□□□□□ -0.72
SF3A1-210ENST00000498259 PLBD2Q8NHP8 589 aa10.55□□□□□ -0.72
SF3A1-210ENST00000498259 MAP3K2Q9Y2U5 619 aa10.55□□□□□ -0.72
SF3A1-210ENST00000498259 USP16Q9Y5T5 823 aa10.55□□□□□ -0.72
SF3A1-210ENST00000498259 RGS12O14924 1447 aa10.55□□□□□ -0.72
SF3A1-210ENST00000498259 IGHDP01880 384 aa10.54□□□□□ -0.72
SF3A1-210ENST00000498259 AIMP1Q12904 312 aaKnown RBP10.54□□□□□ -0.72
SF3A1-210ENST00000498259 HSP90AB4PQ58FF6 505 aa10.54□□□□□ -0.72
SF3A1-210ENST00000498259 BEND3Q5T5X7 828 aa10.54□□□□□ -0.72
SF3A1-210ENST00000498259 KIF6Q6ZMV9 814 aa10.54□□□□□ -0.72
SF3A1-210ENST00000498259 SMC5Q8IY18 1101 aa10.54□□□□□ -0.72
SF3A1-210ENST00000498259 ANKRD44Q8N8A2 993 aa10.54□□□□□ -0.72
SF3A1-210ENST00000498259 XAGE3Q8WTP9 111 aa10.54□□□□□ -0.72
SF3A1-210ENST00000498259 QTRT2Q9H974 415 aaKnown RBP10.54□□□□□ -0.72
SF3A1-210ENST00000498259 ASAP1Q9ULH1 1129 aa10.54□□□□□ -0.72
SF3A1-210ENST00000498259 WNK3Q9BYP7 1800 aa10.54□□□□□ -0.72
SF3A1-210ENST00000498259 PDIA6Q15084 440 aa10.53□□□□□ -0.72
SF3A1-210ENST00000498259 HSP90AB3PQ58FF7 597 aa10.53□□□□□ -0.72
SF3A1-210ENST00000498259 METTL22Q9BUU2 404 aaPredicted RBP10.53□□□□□ -0.72
SF3A1-210ENST00000498259 SHANK3Q9BYB0 1731 aa10.53□□□□□ -0.72
SF3A1-210ENST00000498259 ATRNO75882 1429 aa10.52□□□□□ -0.73
SF3A1-210ENST00000498259 PRAMEF22A3QJZ6 481 aa10.52□□□□□ -0.73
SF3A1-210ENST00000498259 MEIS3Q99687 375 aa10.52□□□□□ -0.73
SF3A1-210ENST00000498259 USP44Q9H0E7 712 aa10.52□□□□□ -0.73
SF3A1-210ENST00000498259 KCPQ6ZWJ8 1503 aa10.52□□□□□ -0.73
SF3A1-210ENST00000498259 ADCY9O60503 1353 aa10.52□□□□□ -0.73
SF3A1-210ENST00000498259 GRM8O00222 908 aa10.51□□□□□ -0.73
SF3A1-210ENST00000498259 HSP90B1P14625 803 aaKnown RBP10.51□□□□□ -0.73
SF3A1-210ENST00000498259 ATP6V1AP38606 617 aa10.51□□□□□ -0.73
SF3A1-210ENST00000498259 IL6STP40189 918 aaPredicted RBP10.51□□□□□ -0.73
SF3A1-210ENST00000498259 ATP8B2P98198 1209 aa10.51□□□□□ -0.73
SF3A1-210ENST00000498259 NUCB1Q02818 461 aa10.51□□□□□ -0.73
SF3A1-210ENST00000498259 PROSER3Q2NL68 480 aa10.51□□□□□ -0.73
SF3A1-210ENST00000498259 CEP85Q6P2H3 762 aa10.51□□□□□ -0.73
SF3A1-210ENST00000498259 DCTPP1Q9H773 170 aa10.51□□□□□ -0.73
SF3A1-210ENST00000498259 PAPPAQ13219 1627 aa10.51□□□□□ -0.73
SF3A1-210ENST00000498259 LAMB4A4D0S4 1761 aa10.5□□□□□ -0.73
SF3A1-210ENST00000498259 UBR2Q8IWV8 1755 aa10.5□□□□□ -0.73
SF3A1-210ENST00000498259 A0A087WZG4 1122 aa10.5□□□□□ -0.73
SF3A1-210ENST00000498259 LOC102724428A0A0B4J2F2 783 aa10.5□□□□□ -0.73
SF3A1-210ENST00000498259 ANXA1P04083 346 aa10.5□□□□□ -0.73
SF3A1-210ENST00000498259 SIK1P57059 783 aa10.5□□□□□ -0.73
SF3A1-210ENST00000498259 RBM6P78332 1123 aaKnown RBP10.5□□□□□ -0.73
SF3A1-210ENST00000498259 FAM196AQ6ZSG2 479 aa10.5□□□□□ -0.73
SF3A1-210ENST00000498259 DNAJC10Q8IXB1 793 aa10.5□□□□□ -0.73
SF3A1-210ENST00000498259 SEPT12Q8IYM1 358 aa10.5□□□□□ -0.73
SF3A1-210ENST00000498259 CCDC191Q8NCU4 936 aa10.5□□□□□ -0.73
SF3A1-210ENST00000498259 ACSBG1Q96GR2 724 aa10.5□□□□□ -0.73
SF3A1-210ENST00000498259 ERVV-1B6SEH8 477 aa10.49□□□□□ -0.73
SF3A1-210ENST00000498259 RAB11FIP3O75154 756 aa10.49□□□□□ -0.73
SF3A1-210ENST00000498259 A1BGP04217 495 aa10.49□□□□□ -0.73
SF3A1-210ENST00000498259 CYP19A1P11511 503 aaPredicted RBP10.49□□□□□ -0.73
SF3A1-210ENST00000498259 GCKRQ14397 625 aa10.49□□□□□ -0.73
SF3A1-210ENST00000498259 ANKRD45Q5TZF3 282 aa10.49□□□□□ -0.73
SF3A1-210ENST00000498259 CHD1LQ86WJ1 897 aa10.49□□□□□ -0.73
SF3A1-210ENST00000498259 MYD88Q99836 296 aa10.49□□□□□ -0.73
SF3A1-210ENST00000498259 C1orf115Q9H7X2 142 aa10.49□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 963 ms