RNA–Protein interactions for RNA: ENST00000498056.1

CPNE1-227, Transcript of copine 1, humanhuman

TSL 2

Gene CPNE1, Length 362 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-227ENST00000498056 ITPK1Q13572 414 aa17.5■□□□□ 0.39
CPNE1-227ENST00000498056 EZH2Q15910 746 aaKnown RBP17.5■□□□□ 0.39
CPNE1-227ENST00000498056 HDGFL1Q5TGJ6 251 aa17.5■□□□□ 0.39
CPNE1-227ENST00000498056 NECTIN2Q92692 538 aa17.5■□□□□ 0.39
CPNE1-227ENST00000498056 ANKRD36CQ5JPF3 1778 aa17.49■□□□□ 0.39
CPNE1-227ENST00000498056 EIF2S2P20042 333 aaKnown RBP17.49■□□□□ 0.39
CPNE1-227ENST00000498056 SLC27A3Q5K4L6 730 aa17.49■□□□□ 0.39
CPNE1-227ENST00000498056 SOS1Q07889 1333 aaPredicted RBP17.48■□□□□ 0.39
CPNE1-227ENST00000498056 N4BP2Q86UW6 1770 aaPredicted RBP17.48■□□□□ 0.39
CPNE1-227ENST00000498056 LINC00116Q8NCU8 138 aa17.48■□□□□ 0.39
CPNE1-227ENST00000498056 AFDNP55196 1824 aaKnown RBP17.48■□□□□ 0.39
CPNE1-227ENST00000498056 LRRC4BQ9NT99 713 aa17.47■□□□□ 0.39
CPNE1-227ENST00000498056 USP16Q9Y5T5 823 aa17.47■□□□□ 0.39
CPNE1-227ENST00000498056 NUP98P52948 1817 aa17.47■□□□□ 0.39
CPNE1-227ENST00000498056 STARD3NLO95772 234 aa17.46■□□□□ 0.39
CPNE1-227ENST00000498056 CAMKK2Q96RR4 588 aa17.46■□□□□ 0.39
CPNE1-227ENST00000498056 TEX13AQ9BXU3 409 aaPredicted RBP17.46■□□□□ 0.39
CPNE1-227ENST00000498056 CNTNAP4Q9C0A0 1308 aa17.46■□□□□ 0.38
CPNE1-227ENST00000498056 TCERG1O14776 1098 aaKnown RBP17.45■□□□□ 0.38
CPNE1-227ENST00000498056 CRKLP46109 303 aaKnown RBP17.45■□□□□ 0.38
CPNE1-227ENST00000498056 PIP4K2AP48426 406 aaPredicted RBP17.45■□□□□ 0.38
CPNE1-227ENST00000498056 AK7Q96M32 723 aa17.45■□□□□ 0.38
CPNE1-227ENST00000498056 ZNF330Q9Y3S2 320 aaPredicted RBP17.45■□□□□ 0.38
CPNE1-227ENST00000498056 VAMP4O75379 141 aa17.44■□□□□ 0.38
CPNE1-227ENST00000498056 CYP19A1P11511 503 aaPredicted RBP17.44■□□□□ 0.38
CPNE1-227ENST00000498056 CCDC30Q5VVM6 783 aa17.44■□□□□ 0.38
CPNE1-227ENST00000498056 PROM2Q8N271 834 aa17.44■□□□□ 0.38
CPNE1-227ENST00000498056 BCL2L13Q9BXK5 485 aa17.44■□□□□ 0.38
CPNE1-227ENST00000498056 STK31Q9BXU1 1019 aa17.44■□□□□ 0.38
CPNE1-227ENST00000498056 CCDC87Q9NVE4 849 aa17.44■□□□□ 0.38
CPNE1-227ENST00000498056 CHPF2Q9P2E5 772 aa17.44■□□□□ 0.38
CPNE1-227ENST00000498056 ZBTB1Q9Y2K1 713 aa17.44■□□□□ 0.38
CPNE1-227ENST00000498056 CT47B1P0C2W7 299 aaPredicted RBP17.43■□□□□ 0.38
CPNE1-227ENST00000498056 MYL6BP14649 208 aa17.43■□□□□ 0.38
CPNE1-227ENST00000498056 CANXP27824 592 aaKnown RBP17.43■□□□□ 0.38
CPNE1-227ENST00000498056 ERBB4Q15303 1308 aa17.43■□□□□ 0.38
CPNE1-227ENST00000498056 COL15A1P39059 1388 aa17.42■□□□□ 0.38
CPNE1-227ENST00000498056 GNPATO15228 680 aa17.42■□□□□ 0.38
CPNE1-227ENST00000498056 ANXA1P04083 346 aa17.42■□□□□ 0.38
CPNE1-227ENST00000498056 A1BGP04217 495 aa17.42■□□□□ 0.38
CPNE1-227ENST00000498056 SMC4Q9NTJ3 1288 aa17.42■□□□□ 0.38
CPNE1-227ENST00000498056 PROSER3Q2NL68 480 aa17.41■□□□□ 0.38
CPNE1-227ENST00000498056 CHMP4AQ9BY43 222 aa17.41■□□□□ 0.38
CPNE1-227ENST00000498056 DBF4Q9UBU7 674 aaPredicted RBP17.41■□□□□ 0.38
CPNE1-227ENST00000498056 CASZ1Q86V15 1759 aa17.4■□□□□ 0.38
CPNE1-227ENST00000498056 PHF14O94880 888 aa17.4■□□□□ 0.38
CPNE1-227ENST00000498056 ZNF827Q17R98 1081 aa17.4■□□□□ 0.38
CPNE1-227ENST00000498056 ANO8Q9HCE9 1232 aaPredicted RBP17.4■□□□□ 0.38
CPNE1-227ENST00000498056 HMGB2P26583 209 aaKnown RBP17.39■□□□□ 0.37
CPNE1-227ENST00000498056 INTS5Q6P9B9 1019 aaKnown RBP17.39■□□□□ 0.37
CPNE1-227ENST00000498056 NPM2Q86SE8 214 aaKnown RBP17.39■□□□□ 0.37
CPNE1-227ENST00000498056 SSH1Q8WYL5 1049 aa17.39■□□□□ 0.37
CPNE1-227ENST00000498056 ZNF428Q96B54 188 aa17.39■□□□□ 0.37
CPNE1-227ENST00000498056 DDX21Q9NR30 783 aaKnown RBP eCLIP17.39■□□□□ 0.37
CPNE1-227ENST00000498056 STK32BQ9NY57 414 aa17.39■□□□□ 0.37
CPNE1-227ENST00000498056 RCAN3Q9UKA8 241 aa17.39■□□□□ 0.37
CPNE1-227ENST00000498056 NBPF26B4DH59 902 aa17.38■□□□□ 0.37
CPNE1-227ENST00000498056 CENPBP07199 599 aaPredicted RBP17.38■□□□□ 0.37
CPNE1-227ENST00000498056 RARSP54136 660 aaKnown RBP17.38■□□□□ 0.37
CPNE1-227ENST00000498056 ALDH1L2Q3SY69 923 aa17.38■□□□□ 0.37
CPNE1-227ENST00000498056 NBPF14Q5TI25 921 aa17.38■□□□□ 0.37
CPNE1-227ENST00000498056 NBPF10Q6P3W6 841 aaKnown RBP17.38■□□□□ 0.37
CPNE1-227ENST00000498056 NBPF15Q8N660 670 aa17.38■□□□□ 0.37
CPNE1-227ENST00000498056 PDIA6Q15084 440 aa17.37■□□□□ 0.37
CPNE1-227ENST00000498056 RC3H1Q5TC82 1133 aaKnown RBP17.37■□□□□ 0.37
CPNE1-227ENST00000498056 RTCBQ9Y3I0 505 aaKnown RBP17.37■□□□□ 0.37
CPNE1-227ENST00000498056 COL24A1Q17RW2 1714 aa17.36■□□□□ 0.37
CPNE1-227ENST00000498056 SLC4A2P04920 1241 aa17.36■□□□□ 0.37
CPNE1-227ENST00000498056 IL6STP40189 918 aaPredicted RBP17.36■□□□□ 0.37
CPNE1-227ENST00000498056 AKT1S1Q96B36 256 aa17.36■□□□□ 0.37
CPNE1-227ENST00000498056 ARXQ96QS3 562 aa17.36■□□□□ 0.37
CPNE1-227ENST00000498056 HYPKQ9NX55 129 aa17.36■□□□□ 0.37
CPNE1-227ENST00000498056 TFCP2L1Q9NZI6 479 aa17.36■□□□□ 0.37
CPNE1-227ENST00000498056 KIF16BQ96L93 1317 aa17.36■□□□□ 0.37
CPNE1-227ENST00000498056 RPS6KA4O75676 772 aa17.35■□□□□ 0.37
CPNE1-227ENST00000498056 BCAR3O75815 825 aa17.35■□□□□ 0.37
CPNE1-227ENST00000498056 AIMP1Q12904 312 aaKnown RBP17.35■□□□□ 0.37
CPNE1-227ENST00000498056 SMIM5Q71RC9 77 aa17.35■□□□□ 0.37
CPNE1-227ENST00000498056 AMIGO3Q86WK7 504 aa17.35■□□□□ 0.37
CPNE1-227ENST00000498056 MRPL50Q8N5N7 158 aaKnown RBP17.35■□□□□ 0.37
CPNE1-227ENST00000498056 PHAXQ9H814 394 aaKnown RBP17.35■□□□□ 0.37
CPNE1-227ENST00000498056 FLIIQ13045 1269 aa17.34■□□□□ 0.37
CPNE1-227ENST00000498056 KIF6Q6ZMV9 814 aa17.34■□□□□ 0.37
CPNE1-227ENST00000498056 G2E3Q7L622 706 aa17.34■□□□□ 0.37
CPNE1-227ENST00000498056 XAGE3Q8WTP9 111 aa17.34■□□□□ 0.37
CPNE1-227ENST00000498056 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP17.33■□□□□ 0.36
CPNE1-227ENST00000498056 SSFA2P28290 1259 aa17.33■□□□□ 0.36
CPNE1-227ENST00000498056 EIF5P55010 431 aaKnown RBP17.33■□□□□ 0.36
CPNE1-227ENST00000498056 FKBP5Q13451 457 aaPredicted RBP17.33■□□□□ 0.36
CPNE1-227ENST00000498056 SLC15A2Q16348 729 aa17.33■□□□□ 0.36
CPNE1-227ENST00000498056 LRP10Q7Z4F1 713 aa17.33■□□□□ 0.36
CPNE1-227ENST00000498056 DZIP3Q86Y13 1208 aaKnown RBP17.33■□□□□ 0.36
CPNE1-227ENST00000498056 FRAT1Q92837 279 aaPredicted RBP17.33■□□□□ 0.36
CPNE1-227ENST00000498056 PXDNLA1KZ92 1463 aa17.32■□□□□ 0.36
CPNE1-227ENST00000498056 PNPLA7Q6ZV29 1317 aa17.32■□□□□ 0.36
CPNE1-227ENST00000498056 MSH5O43196 834 aa17.32■□□□□ 0.36
CPNE1-227ENST00000498056 ZBTB3Q9H5J0 574 aa17.32■□□□□ 0.36
CPNE1-227ENST00000498056 LAMB2P55268 1798 aa17.32■□□□□ 0.36
CPNE1-227ENST00000498056 A0A087WZG4 1122 aa17.31■□□□□ 0.36
CPNE1-227ENST00000498056 ADRA2BP18089 450 aa17.31■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 70.2 ms