RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 MARCH6O60337 910 aa19.28■□□□□ 0.68
CCDC88B-209ENST00000494080 LARP6Q9BRS8 491 aaKnown RBP19.28■□□□□ 0.68
CCDC88B-209ENST00000494080 TBX22Q9Y458 520 aa19.28■□□□□ 0.68
CCDC88B-209ENST00000494080 PRPF40BQ6NWY9 871 aaKnown RBP19.28■□□□□ 0.68
CCDC88B-209ENST00000494080 ANKRD44Q8N8A2 993 aa19.28■□□□□ 0.68
CCDC88B-209ENST00000494080 ZBTB3Q9H5J0 574 aa19.28■□□□□ 0.68
CCDC88B-209ENST00000494080 PES1O00541 588 aaKnown RBP19.28■□□□□ 0.68
CCDC88B-209ENST00000494080 TTC22Q5TAA0 569 aa19.28■□□□□ 0.68
CCDC88B-209ENST00000494080 MTMR7Q9Y216 660 aa19.28■□□□□ 0.68
CCDC88B-209ENST00000494080 ATP2B1P20020 1258 aa19.27■□□□□ 0.68
CCDC88B-209ENST00000494080 LARP1BQ659C4 914 aaKnown RBP19.27■□□□□ 0.68
CCDC88B-209ENST00000494080 LRSAM1Q6UWE0 723 aa19.27■□□□□ 0.68
CCDC88B-209ENST00000494080 IFNL2Q8IZJ0 200 aa19.27■□□□□ 0.68
CCDC88B-209ENST00000494080 MPHOSPH8Q99549 860 aa19.27■□□□□ 0.68
CCDC88B-209ENST00000494080 TMOD3Q9NYL9 352 aa19.27■□□□□ 0.68
CCDC88B-209ENST00000494080 TNMDQ9H2S6 317 aa19.27■□□□□ 0.68
CCDC88B-209ENST00000494080 PIK3R4Q99570 1358 aa19.27■□□□□ 0.68
CCDC88B-209ENST00000494080 KDM5CP41229 1560 aa19.27■□□□□ 0.67
CCDC88B-209ENST00000494080 SDF4Q9BRK5 362 aa19.27■□□□□ 0.67
CCDC88B-209ENST00000494080 SDSP20132 328 aa19.26■□□□□ 0.67
CCDC88B-209ENST00000494080 CADPS2Q86UW7 1296 aa19.26■□□□□ 0.67
CCDC88B-209ENST00000494080 FMNL2Q96PY5 1086 aa19.26■□□□□ 0.67
CCDC88B-209ENST00000494080 ZMYM4Q5VZL5 1548 aa19.26■□□□□ 0.67
CCDC88B-209ENST00000494080 ADCY5O95622 1261 aa19.26■□□□□ 0.67
CCDC88B-209ENST00000494080 AMOTL1Q8IY63 956 aa19.26■□□□□ 0.67
CCDC88B-209ENST00000494080 ZFYVE9O95405 1425 aa19.26■□□□□ 0.67
CCDC88B-209ENST00000494080 BLMP54132 1417 aaPredicted RBP19.26■□□□□ 0.67
CCDC88B-209ENST00000494080 NCBP3Q53F19 620 aaKnown RBP19.26■□□□□ 0.67
CCDC88B-209ENST00000494080 UBE3BQ7Z3V4 1068 aa19.26■□□□□ 0.67
CCDC88B-209ENST00000494080 PRIMPOLQ96LW4 560 aa19.26■□□□□ 0.67
CCDC88B-209ENST00000494080 DHX16O60231 1041 aaKnown RBP19.25■□□□□ 0.67
CCDC88B-209ENST00000494080 PIP4K2AP48426 406 aaPredicted RBP19.25■□□□□ 0.67
CCDC88B-209ENST00000494080 ADAMTS2O95450 1211 aa19.25■□□□□ 0.67
CCDC88B-209ENST00000494080 STARD3NLO95772 234 aa19.25■□□□□ 0.67
CCDC88B-209ENST00000494080 SAFBQ15424 915 aaKnown RBP eCLIP19.25■□□□□ 0.67
CCDC88B-209ENST00000494080 TAF3Q5VWG9 929 aa19.25■□□□□ 0.67
CCDC88B-209ENST00000494080 VPS53Q5VIR6 699 aa19.24■□□□□ 0.67
CCDC88B-209ENST00000494080 FILIP1Q7Z7B0 1213 aa19.24■□□□□ 0.67
CCDC88B-209ENST00000494080 GCP02774 474 aa19.24■□□□□ 0.67
CCDC88B-209ENST00000494080 LTKP29376 864 aa19.24■□□□□ 0.67
CCDC88B-209ENST00000494080 HS1BP3Q53T59 392 aa19.24■□□□□ 0.67
CCDC88B-209ENST00000494080 CCDC183Q5T5S1 534 aa19.24■□□□□ 0.67
CCDC88B-209ENST00000494080 FERMT3Q86UX7 667 aa19.24■□□□□ 0.67
CCDC88B-209ENST00000494080 KRT85P78386 507 aa19.23■□□□□ 0.67
CCDC88B-209ENST00000494080 KAT6BQ8WYB5 2073 aa19.23■□□□□ 0.67
CCDC88B-209ENST00000494080 HOXC9P31274 260 aa19.23■□□□□ 0.67
CCDC88B-209ENST00000494080 NOLC1Q14978 699 aaKnown RBP eCLIP19.23■□□□□ 0.67
CCDC88B-209ENST00000494080 G2E3Q7L622 706 aa19.23■□□□□ 0.67
CCDC88B-209ENST00000494080 CCDC83Q8IWF9 413 aa19.23■□□□□ 0.67
CCDC88B-209ENST00000494080 C16orf45Q96MC5 204 aaPredicted RBP19.23■□□□□ 0.67
CCDC88B-209ENST00000494080 RHPN1Q8TCX5 695 aa19.22■□□□□ 0.67
CCDC88B-209ENST00000494080 TTC12Q9H892 705 aaPredicted RBP19.22■□□□□ 0.67
CCDC88B-209ENST00000494080 NEO1Q92859 1461 aa19.22■□□□□ 0.67
CCDC88B-209ENST00000494080 IGSF3O75054 1194 aa19.22■□□□□ 0.67
CCDC88B-209ENST00000494080 IDH1O75874 414 aaKnown RBP19.22■□□□□ 0.67
CCDC88B-209ENST00000494080 HCLS1P14317 486 aaPredicted RBP19.22■□□□□ 0.67
CCDC88B-209ENST00000494080 ANKRD1Q15327 319 aa19.22■□□□□ 0.67
CCDC88B-209ENST00000494080 DDX24Q9GZR7 859 aaKnown RBP eCLIP19.22■□□□□ 0.678e-7■■■■□ 24.2
CCDC88B-209ENST00000494080 NUP62CLQ9H1M0 184 aa19.22■□□□□ 0.67
CCDC88B-209ENST00000494080 ECHDC1Q9NTX5 307 aa19.22■□□□□ 0.67
CCDC88B-209ENST00000494080 CHD1O14646 1710 aa19.22■□□□□ 0.67
CCDC88B-209ENST00000494080 PDE1AP54750 535 aa19.22■□□□□ 0.67
CCDC88B-209ENST00000494080 BICDL1Q6ZP65 573 aa19.22■□□□□ 0.67
CCDC88B-209ENST00000494080 PREX2Q70Z35 1606 aa19.22■□□□□ 0.67
CCDC88B-209ENST00000494080 ZBTB7BO15156 539 aaPredicted RBP19.21■□□□□ 0.67
CCDC88B-209ENST00000494080 EDC4Q6P2E9 1401 aaKnown RBP19.21■□□□□ 0.67
CCDC88B-209ENST00000494080 GPTP24298 496 aa19.21■□□□□ 0.67
CCDC88B-209ENST00000494080 HSPA2P54652 639 aa19.21■□□□□ 0.67
CCDC88B-209ENST00000494080 DDX11Q96FC9 970 aa19.21■□□□□ 0.67
CCDC88B-209ENST00000494080 CAMK4Q16566 473 aa19.21■□□□□ 0.67
CCDC88B-209ENST00000494080 CCDC94Q9BW85 323 aaPredicted RBP19.21■□□□□ 0.67
CCDC88B-209ENST00000494080 ERVK-7P63135 1459 aa19.2■□□□□ 0.66
CCDC88B-209ENST00000494080 KINO60870 393 aaKnown RBP19.2■□□□□ 0.66
CCDC88B-209ENST00000494080 SMC2O95347 1197 aa19.2■□□□□ 0.66
CCDC88B-209ENST00000494080 METTL24Q5JXM2 366 aa19.2■□□□□ 0.66
CCDC88B-209ENST00000494080 CEP85Q6P2H3 762 aa19.2■□□□□ 0.66
CCDC88B-209ENST00000494080 COPS6Q7L5N1 327 aa19.2■□□□□ 0.66
CCDC88B-209ENST00000494080 TRERF1Q96PN7 1200 aa19.2■□□□□ 0.66
CCDC88B-209ENST00000494080 NAT10Q9H0A0 1025 aaKnown RBP19.2■□□□□ 0.66
CCDC88B-209ENST00000494080 SBNO2Q9Y2G9 1366 aa19.2■□□□□ 0.66
CCDC88B-209ENST00000494080 ORAI2Q96SN7 254 aa19.2■□□□□ 0.66
CCDC88B-209ENST00000494080 NOL7Q9UMY1 257 aaKnown RBP19.2■□□□□ 0.66
CCDC88B-209ENST00000494080 AKAP4Q5JQC9 854 aa19.2■□□□□ 0.66
CCDC88B-209ENST00000494080 XAGE3Q8WTP9 111 aa19.2■□□□□ 0.66
CCDC88B-209ENST00000494080 RBSNQ9H1K0 784 aa19.2■□□□□ 0.66
CCDC88B-209ENST00000494080 PHAXQ9H814 394 aaKnown RBP19.2■□□□□ 0.66
CCDC88B-209ENST00000494080 ANKRD13DQ6ZTN6 518 aa19.19■□□□□ 0.66
CCDC88B-209ENST00000494080 DCTPP1Q9H773 170 aa19.19■□□□□ 0.66
CCDC88B-209ENST00000494080 SART3Q15020 963 aaKnown RBP19.19■□□□□ 0.66
CCDC88B-209ENST00000494080 CWC15Q9P013 229 aaKnown RBP19.19■□□□□ 0.66
CCDC88B-209ENST00000494080 SNRPA1P09661 255 aaKnown RBP19.18■□□□□ 0.66
CCDC88B-209ENST00000494080 MAP3K11Q16584 847 aa19.18■□□□□ 0.66
CCDC88B-209ENST00000494080 FSD2A1L4K1 749 aa19.18■□□□□ 0.66
CCDC88B-209ENST00000494080 TNNT1P13805 278 aa19.18■□□□□ 0.66
CCDC88B-209ENST00000494080 NOM1Q5C9Z4 860 aaKnown RBP19.18■□□□□ 0.66
CCDC88B-209ENST00000494080 SMAP1Q8IYB5 467 aaPredicted RBP19.18■□□□□ 0.66
CCDC88B-209ENST00000494080 NFATC2IPQ8NCF5 419 aa19.18■□□□□ 0.66
CCDC88B-209ENST00000494080 IFIT1P09914 478 aaKnown RBP19.18■□□□□ 0.66
CCDC88B-209ENST00000494080 GAS2L3Q86XJ1 694 aa19.18■□□□□ 0.66
CCDC88B-209ENST00000494080 CDC42BPAQ5VT25 1732 aa19.17■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms