RNA–Protein interactions for RNA: ENST00000493348.1

TM4SF1-204, Transcript of transmembrane 4 L six family member 1, humanhuman

TSL 2

Gene TM4SF1, Length 976 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TM4SF1-204ENST00000493348 UBR3Q6ZT12 1888 aa10.56□□□□□ -0.72
TM4SF1-204ENST00000493348 SENP3-EIF4A1A0A087X0R7 540 aa10.56□□□□□ -0.72
TM4SF1-204ENST00000493348 SSFA2P28290 1259 aa10.56□□□□□ -0.72
TM4SF1-204ENST00000493348 RFC4P35249 363 aa10.56□□□□□ -0.72
TM4SF1-204ENST00000493348 CRKLP46109 303 aaKnown RBP10.56□□□□□ -0.72
TM4SF1-204ENST00000493348 ITPK1Q13572 414 aa10.56□□□□□ -0.72
TM4SF1-204ENST00000493348 CCDC27Q2M243 656 aa10.56□□□□□ -0.72
TM4SF1-204ENST00000493348 TRAPPC3LQ5T215 181 aa10.56□□□□□ -0.72
TM4SF1-204ENST00000493348 CFAP44Q96MT7 982 aa10.56□□□□□ -0.72
TM4SF1-204ENST00000493348 ARXQ96QS3 562 aa10.56□□□□□ -0.72
TM4SF1-204ENST00000493348 CHMP4AQ9BY43 222 aa10.56□□□□□ -0.72
TM4SF1-204ENST00000493348 CCDC87Q9NVE4 849 aa10.56□□□□□ -0.72
TM4SF1-204ENST00000493348 IFT57Q9NWB7 429 aa10.56□□□□□ -0.72
TM4SF1-204ENST00000493348 PPP1R1BQ9UD71 204 aaPredicted RBP10.56□□□□□ -0.72
TM4SF1-204ENST00000493348 KCPQ6ZWJ8 1503 aa10.56□□□□□ -0.72
TM4SF1-204ENST00000493348 CNTNAP4Q9C0A0 1308 aa10.56□□□□□ -0.72
TM4SF1-204ENST00000493348 TJP1Q07157 1748 aa10.55□□□□□ -0.72
TM4SF1-204ENST00000493348 POLD1P28340 1107 aa10.55□□□□□ -0.72
TM4SF1-204ENST00000493348 SLC16A10Q8TF71 515 aa10.55□□□□□ -0.72
TM4SF1-204ENST00000493348 SPON1Q9HCB6 807 aa10.55□□□□□ -0.72
TM4SF1-204ENST00000493348 CICQ96RK0 1608 aaPredicted RBP10.55□□□□□ -0.72
TM4SF1-204ENST00000493348 A0A087WZG4 1122 aa10.54□□□□□ -0.72
TM4SF1-204ENST00000493348 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP10.54□□□□□ -0.72
TM4SF1-204ENST00000493348 KCNQ3O43525 872 aa10.54□□□□□ -0.72
TM4SF1-204ENST00000493348 ZPR1O75312 459 aa10.54□□□□□ -0.72
TM4SF1-204ENST00000493348 RPS6KA4O75676 772 aa10.54□□□□□ -0.72
TM4SF1-204ENST00000493348 CANXP27824 592 aaKnown RBP10.54□□□□□ -0.72
TM4SF1-204ENST00000493348 EIF4A1P60842 406 aaKnown RBP10.54□□□□□ -0.72
TM4SF1-204ENST00000493348 WWC1Q8IX03 1113 aa10.54□□□□□ -0.72
TM4SF1-204ENST00000493348 SLC4A9Q96Q91 983 aa10.54□□□□□ -0.72
TM4SF1-204ENST00000493348 MTFR1LQ9H019 292 aa10.54□□□□□ -0.72
TM4SF1-204ENST00000493348 LAMB4A4D0S4 1761 aa10.54□□□□□ -0.72
TM4SF1-204ENST00000493348 MYH14Q7Z406 1995 aaKnown RBP10.54□□□□□ -0.72
TM4SF1-204ENST00000493348 ZBTB7AO95365 584 aa10.53□□□□□ -0.72
TM4SF1-204ENST00000493348 CYP19A1P11511 503 aaPredicted RBP10.53□□□□□ -0.72
TM4SF1-204ENST00000493348 WDR63Q8IWG1 891 aa10.53□□□□□ -0.72
TM4SF1-204ENST00000493348 MYH16Q9H6N6 1097 aa10.53□□□□□ -0.72
TM4SF1-204ENST00000493348 IL16Q14005 1332 aa10.53□□□□□ -0.72
TM4SF1-204ENST00000493348 PNPLA7Q6ZV29 1317 aa10.53□□□□□ -0.72
TM4SF1-204ENST00000493348 CHL1O00533 1208 aa10.52□□□□□ -0.73
TM4SF1-204ENST00000493348 EIF2S2P20042 333 aaKnown RBP10.52□□□□□ -0.73
TM4SF1-204ENST00000493348 COL23A1Q86Y22 540 aaPredicted RBP10.52□□□□□ -0.73
TM4SF1-204ENST00000493348 ATF5Q9Y2D1 282 aaPredicted RBP10.52□□□□□ -0.73
TM4SF1-204ENST00000493348 CASZ1Q86V15 1759 aa10.52□□□□□ -0.73
TM4SF1-204ENST00000493348 GIGYF1O75420 1035 aaPredicted RBP10.51□□□□□ -0.73
TM4SF1-204ENST00000493348 GOLGA2Q08379 1002 aa10.51□□□□□ -0.73
TM4SF1-204ENST00000493348 MBIPQ9NS73 344 aa10.51□□□□□ -0.73
TM4SF1-204ENST00000493348 ZBTB1Q9Y2K1 713 aa10.51□□□□□ -0.73
TM4SF1-204ENST00000493348 USP16Q9Y5T5 823 aa10.51□□□□□ -0.73
TM4SF1-204ENST00000493348 COL15A1P39059 1388 aa10.51□□□□□ -0.73
TM4SF1-204ENST00000493348 A1BGP04217 495 aa10.5□□□□□ -0.73
TM4SF1-204ENST00000493348 HOXB7P09629 217 aa10.5□□□□□ -0.73
TM4SF1-204ENST00000493348 IL6STP40189 918 aaPredicted RBP10.5□□□□□ -0.73
TM4SF1-204ENST00000493348 HDGFL1Q5TGJ6 251 aa10.5□□□□□ -0.73
TM4SF1-204ENST00000493348 INTS5Q6P9B9 1019 aaKnown RBP10.5□□□□□ -0.73
TM4SF1-204ENST00000493348 ARHGEF1Q92888 912 aaKnown RBP10.5□□□□□ -0.73
TM4SF1-204ENST00000493348 NPHP1O15259 732 aa10.49□□□□□ -0.73
TM4SF1-204ENST00000493348 MYL6BP14649 208 aa10.49□□□□□ -0.73
TM4SF1-204ENST00000493348 HNRNPUQ00839 825 aaKnown RBP eCLIP10.49□□□□□ -0.73
TM4SF1-204ENST00000493348 DUSP27Q5VZP5 1158 aa10.49□□□□□ -0.73
TM4SF1-204ENST00000493348 MSL1Q68DK7 614 aa10.49□□□□□ -0.73
TM4SF1-204ENST00000493348 KIF6Q6ZMV9 814 aa10.49□□□□□ -0.73
TM4SF1-204ENST00000493348 KLHL34Q8N239 644 aa10.49□□□□□ -0.73
TM4SF1-204ENST00000493348 NLGN1Q8N2Q7 840 aa10.49□□□□□ -0.73
TM4SF1-204ENST00000493348 NECTIN2Q92692 538 aa10.49□□□□□ -0.73
TM4SF1-204ENST00000493348 ZNF652Q9Y2D9 606 aa10.49□□□□□ -0.73
TM4SF1-204ENST00000493348 SOS1Q07889 1333 aaPredicted RBP10.49□□□□□ -0.73
TM4SF1-204ENST00000493348 ERBB4Q15303 1308 aa10.49□□□□□ -0.73
TM4SF1-204ENST00000493348 C4AP0C0L4 1744 aa10.49□□□□□ -0.73
TM4SF1-204ENST00000493348 PRAMEF22A3QJZ6 481 aa10.48□□□□□ -0.73
TM4SF1-204ENST00000493348 ELL2O00472 640 aaPredicted RBP10.48□□□□□ -0.73
TM4SF1-204ENST00000493348 ZNF853P0CG23 659 aa10.48□□□□□ -0.73
TM4SF1-204ENST00000493348 DZIP3Q86Y13 1208 aaKnown RBP10.48□□□□□ -0.73
TM4SF1-204ENST00000493348 TSR2Q969E8 191 aaKnown RBP10.48□□□□□ -0.73
TM4SF1-204ENST00000493348 STK31Q9BXU1 1019 aa10.48□□□□□ -0.73
TM4SF1-204ENST00000493348 PDGFDQ9GZP0 370 aaPredicted RBP10.48□□□□□ -0.73
TM4SF1-204ENST00000493348 PARP3Q9Y6F1 533 aa10.48□□□□□ -0.73
TM4SF1-204ENST00000493348 LRP5O75197 1615 aa10.47□□□□□ -0.73
TM4SF1-204ENST00000493348 CACNA1FO60840 1977 aa10.47□□□□□ -0.73
TM4SF1-204ENST00000493348 E9PSI1 815 aa10.47□□□□□ -0.73
TM4SF1-204ENST00000493348 PIP4K2AP48426 406 aaPredicted RBP10.47□□□□□ -0.73
TM4SF1-204ENST00000493348 EIF5P55010 431 aaKnown RBP10.47□□□□□ -0.73
TM4SF1-204ENST00000493348 CCDC30Q5VVM6 783 aa10.47□□□□□ -0.73
TM4SF1-204ENST00000493348 USPL1Q5W0Q7 1092 aa10.47□□□□□ -0.73
TM4SF1-204ENST00000493348 SMIM5Q71RC9 77 aa10.47□□□□□ -0.73
TM4SF1-204ENST00000493348 DBF4Q9UBU7 674 aaPredicted RBP10.47□□□□□ -0.73
TM4SF1-204ENST00000493348 NARFQ9UHQ1 456 aa10.47□□□□□ -0.73
TM4SF1-204ENST00000493348 USP42Q9H9J4 1324 aaKnown RBP10.47□□□□□ -0.73
TM4SF1-204ENST00000493348 TWISTNBQ3B726 338 aaPredicted RBP10.46□□□□□ -0.73
TM4SF1-204ENST00000493348 TBC1D2BQ9UPU7 963 aa10.46□□□□□ -0.73
TM4SF1-204ENST00000493348 FANCIQ9NVI1 1328 aa10.46□□□□□ -0.73
TM4SF1-204ENST00000493348 AIMP1Q12904 312 aaKnown RBP10.45□□□□□ -0.74
TM4SF1-204ENST00000493348 DDX21Q9NR30 783 aaKnown RBP eCLIP10.45□□□□□ -0.74
TM4SF1-204ENST00000493348 HYPKQ9NX55 129 aa10.45□□□□□ -0.74
TM4SF1-204ENST00000493348 SRP68Q9UHB9 627 aaKnown RBP10.45□□□□□ -0.74
TM4SF1-204ENST00000493348 DDX58O95786 925 aaKnown RBP10.44□□□□□ -0.74
TM4SF1-204ENST00000493348 MMP10P09238 476 aa10.44□□□□□ -0.74
TM4SF1-204ENST00000493348 GYS1P13807 737 aa10.44□□□□□ -0.74
TM4SF1-204ENST00000493348 EXOSC9Q06265 439 aaKnown RBP10.44□□□□□ -0.74
TM4SF1-204ENST00000493348 KRT24Q2M2I5 525 aa10.44□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms