RNA–Protein interactions for RNA: ENST00000493341.1

VPS13A-212, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,001 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-212ENST00000493341 VARSP26640 1264 aaKnown RBP6.99□□□□□ -1.29
VPS13A-212ENST00000493341 DPH6Q7L8W6 267 aa6.99□□□□□ -1.29
VPS13A-212ENST00000493341 SLC4A9Q96Q91 983 aa6.99□□□□□ -1.29
VPS13A-212ENST00000493341 FAM129BQ96TA1 746 aa6.99□□□□□ -1.29
VPS13A-212ENST00000493341 MAP4K5Q9Y4K4 846 aa6.99□□□□□ -1.29
VPS13A-212ENST00000493341 PNMA6FA0A0J9YX94 578 aa6.98□□□□□ -1.29
VPS13A-212ENST00000493341 A6NJY4 79 aa6.98□□□□□ -1.29
VPS13A-212ENST00000493341 FSHRP23945 695 aa6.98□□□□□ -1.29
VPS13A-212ENST00000493341 ZNF76P36508 570 aa6.98□□□□□ -1.29
VPS13A-212ENST00000493341 ABTB2Q8N961 1025 aa6.98□□□□□ -1.29
VPS13A-212ENST00000493341 NGLY1Q96IV0 654 aa6.98□□□□□ -1.29
VPS13A-212ENST00000493341 QTRT2Q9H974 415 aaKnown RBP6.98□□□□□ -1.29
VPS13A-212ENST00000493341 RAB6BQ9NRW1 208 aa6.98□□□□□ -1.29
VPS13A-212ENST00000493341 PRKAG2Q9UGJ0 569 aa6.98□□□□□ -1.29
VPS13A-212ENST00000493341 DNM1Q05193 864 aaKnown RBP6.98□□□□□ -1.29
VPS13A-212ENST00000493341 ZNF784Q8NCA9 323 aaPredicted RBP6.98□□□□□ -1.29
VPS13A-212ENST00000493341 TGIF2Q9GZN2 237 aa6.98□□□□□ -1.29
VPS13A-212ENST00000493341 METTL5Q9NRN9 209 aaKnown RBP6.98□□□□□ -1.29
VPS13A-212ENST00000493341 POLIQ9UNA4 740 aa6.98□□□□□ -1.29
VPS13A-212ENST00000493341 CHMP3Q9Y3E7 222 aa6.98□□□□□ -1.29
VPS13A-212ENST00000493341 PPEF1O14829 653 aaPredicted RBP6.97□□□□□ -1.29
VPS13A-212ENST00000493341 SMTNP53814 917 aa6.97□□□□□ -1.29
VPS13A-212ENST00000493341 TRIM32Q13049 653 aa6.97□□□□□ -1.29
VPS13A-212ENST00000493341 FAM26DQ5JW98 314 aa6.97□□□□□ -1.29
VPS13A-212ENST00000493341 GIMAP6Q6P9H5 292 aa6.97□□□□□ -1.29
VPS13A-212ENST00000493341 ALKBH8Q96BT7 664 aaKnown RBP6.97□□□□□ -1.29
VPS13A-212ENST00000493341 TINF2Q9BSI4 451 aa6.97□□□□□ -1.29
VPS13A-212ENST00000493341 ACBD3Q9H3P7 528 aa6.97□□□□□ -1.29
VPS13A-212ENST00000493341 GNRH1P01148 92 aa6.96□□□□□ -1.29
VPS13A-212ENST00000493341 ATP2B1P20020 1258 aa6.96□□□□□ -1.29
VPS13A-212ENST00000493341 BRD2P25440 801 aaKnown RBP6.96□□□□□ -1.29
VPS13A-212ENST00000493341 GTF2F1P35269 517 aaKnown RBP eCLIP6.96□□□□□ -1.29
VPS13A-212ENST00000493341 PSMA6P60900 246 aaKnown RBP6.96□□□□□ -1.29
VPS13A-212ENST00000493341 FOXK2Q01167 660 aa6.96□□□□□ -1.29
VPS13A-212ENST00000493341 DHX9Q08211 1270 aaKnown RBP6.96□□□□□ -1.29
VPS13A-212ENST00000493341 ESCO1Q5FWF5 840 aa6.96□□□□□ -1.29
VPS13A-212ENST00000493341 DHX38Q92620 1227 aaKnown RBP6.96□□□□□ -1.29
VPS13A-212ENST00000493341 TRIM52Q96A61 297 aa6.96□□□□□ -1.29
VPS13A-212ENST00000493341 TNNI2P48788 182 aa6.96□□□□□ -1.3
VPS13A-212ENST00000493341 PTPN5P54829 565 aa6.96□□□□□ -1.3
VPS13A-212ENST00000493341 ENOX2Q16206 610 aaKnown RBP6.96□□□□□ -1.3
VPS13A-212ENST00000493341 ALG1LQ6GMV1 187 aa6.96□□□□□ -1.3
VPS13A-212ENST00000493341 CYP2U1Q7Z449 544 aa6.96□□□□□ -1.3
VPS13A-212ENST00000493341 STAG2Q8N3U4 1231 aa6.96□□□□□ -1.3
VPS13A-212ENST00000493341 EHBP1Q8NDI1 1231 aa6.96□□□□□ -1.3
VPS13A-212ENST00000493341 SKOR1P84550 965 aa6.95□□□□□ -1.3
VPS13A-212ENST00000493341 GNL2Q13823 731 aaKnown RBP6.95□□□□□ -1.3
VPS13A-212ENST00000493341 EMILIN1Q9Y6C2 1016 aa6.95□□□□□ -1.3
VPS13A-212ENST00000493341 GNA15P30679 374 aa6.94□□□□□ -1.3
VPS13A-212ENST00000493341 DNAJA1P31689 397 aaKnown RBP6.94□□□□□ -1.3
VPS13A-212ENST00000493341 MYT1Q01538 1121 aa6.94□□□□□ -1.3
VPS13A-212ENST00000493341 ARHGEF10LQ9HCE6 1279 aa6.94□□□□□ -1.3
VPS13A-212ENST00000493341 ZNF232Q9UNY5 417 aa6.94□□□□□ -1.3
VPS13A-212ENST00000493341 IQSEC3Q9UPP2 1182 aaPredicted RBP6.94□□□□□ -1.3
VPS13A-212ENST00000493341 CADPSQ9ULU8 1353 aa6.94□□□□□ -1.3
VPS13A-212ENST00000493341 GRM5P41594 1212 aa6.94□□□□□ -1.3
VPS13A-212ENST00000493341 USP5P45974 858 aa6.94□□□□□ -1.3
VPS13A-212ENST00000493341 MTFR1Q15390 333 aa6.94□□□□□ -1.3
VPS13A-212ENST00000493341 EDEM1Q92611 657 aa6.94□□□□□ -1.3
VPS13A-212ENST00000493341 EPB41L3Q9Y2J2 1087 aaPredicted RBP6.94□□□□□ -1.3
VPS13A-212ENST00000493341 MZF1P28698 734 aaPredicted RBP6.93□□□□□ -1.3
VPS13A-212ENST00000493341 ETFBKMTQ8IXQ9 262 aa6.93□□□□□ -1.3
VPS13A-212ENST00000493341 GJD3Q8N144 294 aa6.93□□□□□ -1.3
VPS13A-212ENST00000493341 MYO19Q96H55 970 aa6.93□□□□□ -1.3
VPS13A-212ENST00000493341 LNPKQ9C0E8 428 aa6.93□□□□□ -1.3
VPS13A-212ENST00000493341 USP3Q9Y6I4 520 aa6.93□□□□□ -1.3
VPS13A-212ENST00000493341 LILRA1O75019 489 aa6.93□□□□□ -1.3
VPS13A-212ENST00000493341 ZAP70P43403 619 aa6.93□□□□□ -1.3
VPS13A-212ENST00000493341 WNT7BP56706 349 aa6.93□□□□□ -1.3
VPS13A-212ENST00000493341 DGKZQ13574 1117 aa6.93□□□□□ -1.3
VPS13A-212ENST00000493341 TLR1Q15399 786 aa6.93□□□□□ -1.3
VPS13A-212ENST00000493341 PPP1R26Q5T8A7 1209 aaPredicted RBP6.93□□□□□ -1.3
VPS13A-212ENST00000493341 SLC43A3Q8NBI5 491 aa6.93□□□□□ -1.3
VPS13A-212ENST00000493341 HCN4Q9Y3Q4 1203 aa6.93□□□□□ -1.3
VPS13A-212ENST00000493341 SERTM1A2A2V5 107 aa6.92□□□□□ -1.3
VPS13A-212ENST00000493341 ADD1P35611 737 aaKnown RBP6.92□□□□□ -1.3
VPS13A-212ENST00000493341 SH3PXD2AQ5TCZ1 1133 aa6.92□□□□□ -1.3
VPS13A-212ENST00000493341 CCDC116Q8IYX3 515 aa6.92□□□□□ -1.3
VPS13A-212ENST00000493341 ALDH16A1Q8IZ83 802 aa6.92□□□□□ -1.3
VPS13A-212ENST00000493341 CNKSR1Q969H4 720 aa6.92□□□□□ -1.3
VPS13A-212ENST00000493341 CDK15Q96Q40 435 aa6.92□□□□□ -1.3
VPS13A-212ENST00000493341 NLRP2Q9NX02 1062 aa6.92□□□□□ -1.3
VPS13A-212ENST00000493341 KLK14Q9P0G3 267 aa6.92□□□□□ -1.3
VPS13A-212ENST00000493341 PDGFAP04085 211 aa6.91□□□□□ -1.3
VPS13A-212ENST00000493341 NCLP19338 710 aaKnown RBP6.91□□□□□ -1.3
VPS13A-212ENST00000493341 ORC1Q13415 861 aa6.91□□□□□ -1.3
VPS13A-212ENST00000493341 C8orf34Q49A92 452 aa6.91□□□□□ -1.3
VPS13A-212ENST00000493341 ZNF394Q53GI3 561 aa6.91□□□□□ -1.3
VPS13A-212ENST00000493341 INPP5FQ9Y2H2 1132 aa6.91□□□□□ -1.3
VPS13A-212ENST00000493341 PCDHGB7Q9Y5F8 929 aa6.91□□□□□ -1.3
VPS13A-212ENST00000493341 PARP3Q9Y6F1 533 aa6.91□□□□□ -1.3
VPS13A-212ENST00000493341 TLL2Q9Y6L7 1015 aa6.91□□□□□ -1.3
VPS13A-212ENST00000493341 CDK2AP1O14519 115 aa6.91□□□□□ -1.3
VPS13A-212ENST00000493341 IL2RAP01589 272 aa6.91□□□□□ -1.3
VPS13A-212ENST00000493341 C11orf91Q3C1V1 193 aa6.91□□□□□ -1.3
VPS13A-212ENST00000493341 TTC16Q8NEE8 873 aa6.91□□□□□ -1.3
VPS13A-212ENST00000493341 IFT43Q96FT9 208 aa6.91□□□□□ -1.3
VPS13A-212ENST00000493341 CRELD1Q96HD1 420 aa6.91□□□□□ -1.3
VPS13A-212ENST00000493341 CSRNP1Q96S65 589 aa6.91□□□□□ -1.3
VPS13A-212ENST00000493341 AK5Q9Y6K8 562 aa6.91□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 50.1 ms