RNA–Protein interactions for RNA: ENST00000491659.5

USP39-217, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 648 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-217ENST00000491659 DCTN1Q14203 1278 aa19.98■□□□□ 0.79
USP39-217ENST00000491659 PLEKHF1Q96S99 279 aa19.98■□□□□ 0.79
USP39-217ENST00000491659 KDM3BQ7LBC6 1761 aa19.98■□□□□ 0.79
USP39-217ENST00000491659 ZPR1O75312 459 aa19.97■□□□□ 0.79
USP39-217ENST00000491659 NFE2L2Q16236 605 aa19.97■□□□□ 0.79
USP39-217ENST00000491659 SRP68Q9UHB9 627 aaKnown RBP19.97■□□□□ 0.79
USP39-217ENST00000491659 PARP3Q9Y6F1 533 aa19.97■□□□□ 0.79
USP39-217ENST00000491659 LAMB4A4D0S4 1761 aa19.96■□□□□ 0.79
USP39-217ENST00000491659 SCN7AQ01118 1682 aa19.96■□□□□ 0.79
USP39-217ENST00000491659 KIAA1551Q9HCM1 1747 aa19.96■□□□□ 0.79
USP39-217ENST00000491659 C10orf71Q711Q0 1435 aa19.95■□□□□ 0.78
USP39-217ENST00000491659 CANXP27824 592 aaKnown RBP19.95■□□□□ 0.78
USP39-217ENST00000491659 N4BP2Q86UW6 1770 aaPredicted RBP19.94■□□□□ 0.78
USP39-217ENST00000491659 KCNQ3O43525 872 aa19.94■□□□□ 0.78
USP39-217ENST00000491659 PRKRIP1Q9H875 184 aaPredicted RBP19.94■□□□□ 0.78
USP39-217ENST00000491659 FKBP8Q14318 412 aa19.93■□□□□ 0.78
USP39-217ENST00000491659 WDR43Q15061 677 aaKnown RBP eCLIP19.93■□□□□ 0.78
USP39-217ENST00000491659 TAF7Q15545 349 aaPredicted RBP19.93■□□□□ 0.78
USP39-217ENST00000491659 USPL1Q5W0Q7 1092 aa19.93■□□□□ 0.78
USP39-217ENST00000491659 NARFQ9UHQ1 456 aa19.93■□□□□ 0.78
USP39-217ENST00000491659 A0A087WZG4 1122 aa19.92■□□□□ 0.78
USP39-217ENST00000491659 PXDNLA1KZ92 1463 aa19.92■□□□□ 0.78
USP39-217ENST00000491659 BCORQ6W2J9 1755 aa19.91■□□□□ 0.78
USP39-217ENST00000491659 AFDNP55196 1824 aaKnown RBP19.91■□□□□ 0.78
USP39-217ENST00000491659 GRIN3BO60391 1043 aa19.91■□□□□ 0.78
USP39-217ENST00000491659 YBX3P16989 372 aaKnown RBP eCLIP19.91■□□□□ 0.78
USP39-217ENST00000491659 NPM2Q86SE8 214 aaKnown RBP19.91■□□□□ 0.78
USP39-217ENST00000491659 PNISRQ8TF01 805 aaKnown RBP19.91■□□□□ 0.78
USP39-217ENST00000491659 ZNF330Q9Y3S2 320 aaPredicted RBP19.91■□□□□ 0.78
USP39-217ENST00000491659 SNRPA1P09661 255 aaKnown RBP19.9■□□□□ 0.78
USP39-217ENST00000491659 EIF5P55010 431 aaKnown RBP19.9■□□□□ 0.78
USP39-217ENST00000491659 BRCA1P38398 1863 aaKnown RBP19.89■□□□□ 0.77
USP39-217ENST00000491659 IL6STP40189 918 aaPredicted RBP19.89■□□□□ 0.77
USP39-217ENST00000491659 DDR1Q08345 913 aa19.89■□□□□ 0.77
USP39-217ENST00000491659 NRXN2Q9P2S2 1712 aa19.89■□□□□ 0.77
USP39-217ENST00000491659 RIPK4P57078 832 aa19.88■□□□□ 0.77
USP39-217ENST00000491659 TGFB2P61812 414 aa19.88■□□□□ 0.77
USP39-217ENST00000491659 LMOD3Q0VAK6 560 aa19.88■□□□□ 0.77
USP39-217ENST00000491659 THUMPD2Q9BTF0 503 aaKnown RBP19.88■□□□□ 0.77
USP39-217ENST00000491659 A1BGP04217 495 aa19.87■□□□□ 0.77
USP39-217ENST00000491659 CCDC146Q8IYE0 955 aa19.87■□□□□ 0.77
USP39-217ENST00000491659 MIS18AQ9NYP9 233 aa19.87■□□□□ 0.77
USP39-217ENST00000491659 POLRMTO00411 1230 aaKnown RBP19.86■□□□□ 0.77
USP39-217ENST00000491659 TM4SF1P30408 202 aa19.86■□□□□ 0.77
USP39-217ENST00000491659 TMPOP42166 694 aaKnown RBP19.86■□□□□ 0.77
USP39-217ENST00000491659 WWC3Q9ULE0 1092 aa19.86■□□□□ 0.77
USP39-217ENST00000491659 USP16Q9Y5T5 823 aa19.86■□□□□ 0.77
USP39-217ENST00000491659 PRAMEF22A3QJZ6 481 aa19.85■□□□□ 0.77
USP39-217ENST00000491659 ZNF316A6NFI3 1004 aaPredicted RBP19.85■□□□□ 0.77
USP39-217ENST00000491659 NFIXQ14938 502 aa19.85■□□□□ 0.77
USP39-217ENST00000491659 RUNDC1Q96C34 613 aa19.85■□□□□ 0.77
USP39-217ENST00000491659 BCL2L12Q9HB09 334 aa19.85■□□□□ 0.77
USP39-217ENST00000491659 ADAMTS8Q9UP79 889 aa19.83■□□□□ 0.77
USP39-217ENST00000491659 TBC1D2BQ9UPU7 963 aa19.83■□□□□ 0.77
USP39-217ENST00000491659 ARFGEF1Q9Y6D6 1849 aa19.83■□□□□ 0.76
USP39-217ENST00000491659 A0A0G2JLW4 131 aa19.82■□□□□ 0.76
USP39-217ENST00000491659 DPEP1P16444 411 aa19.82■□□□□ 0.76
USP39-217ENST00000491659 PIP4K2AP48426 406 aaPredicted RBP19.82■□□□□ 0.76
USP39-217ENST00000491659 TSPYL4Q9UJ04 414 aa19.82■□□□□ 0.76
USP39-217ENST00000491659 RRP7AQ9Y3A4 280 aaKnown RBP19.82■□□□□ 0.76
USP39-217ENST00000491659 UTRNP46939 3433 aa19.82■□□□□ 0.76
USP39-217ENST00000491659 DLEC1Q9Y238 1755 aa19.82■□□□□ 0.76
USP39-217ENST00000491659 EIF4A1P60842 406 aaKnown RBP19.81■□□□□ 0.76
USP39-217ENST00000491659 NEUROD2Q15784 382 aa19.81■□□□□ 0.76
USP39-217ENST00000491659 BICDL1Q6ZP65 573 aa19.81■□□□□ 0.76
USP39-217ENST00000491659 DZIP3Q86Y13 1208 aaKnown RBP19.81■□□□□ 0.76
USP39-217ENST00000491659 SERPINB2P05120 415 aa19.8■□□□□ 0.76
USP39-217ENST00000491659 BCS1LQ9Y276 419 aa19.8■□□□□ 0.76
USP39-217ENST00000491659 CARMIL3Q8ND23 1372 aa19.8■□□□□ 0.76
USP39-217ENST00000491659 GOLGB1Q14789 3259 aaKnown RBP19.79■□□□□ 0.76
USP39-217ENST00000491659 GIGYF1O75420 1035 aaPredicted RBP19.79■□□□□ 0.76
USP39-217ENST00000491659 CAMTA2O94983 1202 aa19.79■□□□□ 0.76
USP39-217ENST00000491659 TBC1D9BQ66K14 1250 aa19.79■□□□□ 0.76
USP39-217ENST00000491659 BABAM1Q9NWV8 329 aa19.79■□□□□ 0.76
USP39-217ENST00000491659 ZNF784Q8NCA9 323 aaPredicted RBP19.78■□□□□ 0.76
USP39-217ENST00000491659 ZNF652Q9Y2D9 606 aa19.78■□□□□ 0.76
USP39-217ENST00000491659 ANKRD31Q8N7Z5 1873 aa19.77■□□□□ 0.76
USP39-217ENST00000491659 NBPF26B4DH59 902 aa19.77■□□□□ 0.76
USP39-217ENST00000491659 NBPF10Q6P3W6 841 aaKnown RBP19.77■□□□□ 0.76
USP39-217ENST00000491659 NBPF15Q8N660 670 aa19.77■□□□□ 0.76
USP39-217ENST00000491659 PIM2Q9P1W9 311 aa19.77■□□□□ 0.76
USP39-217ENST00000491659 SETDB2Q96T68 719 aa19.76■□□□□ 0.75
USP39-217ENST00000491659 NPHP1O15259 732 aa19.75■□□□□ 0.75
USP39-217ENST00000491659 ANP32CO43423 234 aa19.75■□□□□ 0.75
USP39-217ENST00000491659 KCNA3P22001 575 aa19.75■□□□□ 0.75
USP39-217ENST00000491659 CHRNA5P30532 468 aa19.75■□□□□ 0.75
USP39-217ENST00000491659 DALRD3Q5D0E6 543 aaKnown RBP19.74■□□□□ 0.75
USP39-217ENST00000491659 CLEC4GQ6UXB4 293 aa19.74■□□□□ 0.75
USP39-217ENST00000491659 TRIM35Q9UPQ4 493 aa19.74■□□□□ 0.75
USP39-217ENST00000491659 NUP98P52948 1817 aa19.74■□□□□ 0.75
USP39-217ENST00000491659 ERBB4Q15303 1308 aa19.74■□□□□ 0.75
USP39-217ENST00000491659 COL11A2P13942 1736 aaPredicted RBP19.73■□□□□ 0.75
USP39-217ENST00000491659 RGL2O15211 777 aa19.73■□□□□ 0.75
USP39-217ENST00000491659 CNBD1Q8NA66 436 aa19.73■□□□□ 0.75
USP39-217ENST00000491659 PRR5LQ6MZQ0 368 aa19.72■□□□□ 0.75
USP39-217ENST00000491659 LAS1LQ9Y4W2 734 aaKnown RBP19.72■□□□□ 0.75
USP39-217ENST00000491659 ATP10DQ9P241 1426 aa19.71■□□□□ 0.75
USP39-217ENST00000491659 ST5P78524 1137 aa19.71■□□□□ 0.75
USP39-217ENST00000491659 KIF6Q6ZMV9 814 aa19.71■□□□□ 0.75
USP39-217ENST00000491659 C2CD5Q86YS7 1000 aa19.71■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 87.1 ms