RNA–Protein interactions for RNA: ENST00000490099.5

TMEM39A-210, Transcript of transmembrane protein 39A, humanhuman

TSL 3

Gene TMEM39A, Length 868 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-210ENST00000490099 TGFB2P61812 414 aa13.04□□□□□ -0.32
TMEM39A-210ENST00000490099 TM4SF1P30408 202 aa13.03□□□□□ -0.32
TMEM39A-210ENST00000490099 FKBP8Q14318 412 aa13.03□□□□□ -0.32
TMEM39A-210ENST00000490099 ZNF790Q6PG37 636 aa13.03□□□□□ -0.32
TMEM39A-210ENST00000490099 SRP68Q9UHB9 627 aaKnown RBP13.03□□□□□ -0.32
TMEM39A-210ENST00000490099 KIF13BQ9NQT8 1826 aa13.02□□□□□ -0.32
TMEM39A-210ENST00000490099 U2AF1L5P0DN76 240 aaPredicted RBP13.02□□□□□ -0.33
TMEM39A-210ENST00000490099 U2AF1Q01081 240 aaKnown RBP eCLIP13.02□□□□□ -0.33
TMEM39A-210ENST00000490099 ZNF496Q96IT1 587 aaPredicted RBP13.02□□□□□ -0.33
TMEM39A-210ENST00000490099 C10orf71Q711Q0 1435 aa13.02□□□□□ -0.33
TMEM39A-210ENST00000490099 UBR2Q8IWV8 1755 aa13.02□□□□□ -0.33
TMEM39A-210ENST00000490099 HTATSF1O43719 755 aaKnown RBP13.01□□□□□ -0.33
TMEM39A-210ENST00000490099 EIF5P55010 431 aaKnown RBP13.01□□□□□ -0.33
TMEM39A-210ENST00000490099 DDR1Q08345 913 aa13.01□□□□□ -0.33
TMEM39A-210ENST00000490099 TEFQ10587 303 aa13.01□□□□□ -0.33
TMEM39A-210ENST00000490099 PELP1Q8IZL8 1130 aaKnown RBP13.01□□□□□ -0.33
TMEM39A-210ENST00000490099 TEX13AQ9BXU3 409 aaPredicted RBP13.01□□□□□ -0.33
TMEM39A-210ENST00000490099 BCL2L12Q9HB09 334 aa13.01□□□□□ -0.33
TMEM39A-210ENST00000490099 NARFQ9UHQ1 456 aa13.01□□□□□ -0.33
TMEM39A-210ENST00000490099 ZBTB1Q9Y2K1 713 aa13.01□□□□□ -0.33
TMEM39A-210ENST00000490099 PXDNLA1KZ92 1463 aa13.01□□□□□ -0.33
TMEM39A-210ENST00000490099 C4AP0C0L4 1744 aa13.01□□□□□ -0.33
TMEM39A-210ENST00000490099 VIRMAQ69YN4 1812 aaKnown RBP13.01□□□□□ -0.33
TMEM39A-210ENST00000490099 SIPA1L3O60292 1781 aaPredicted RBP13□□□□□ -0.33
TMEM39A-210ENST00000490099 HEG1Q9ULI3 1381 aa13□□□□□ -0.33
TMEM39A-210ENST00000490099 STARD3NLO95772 234 aa13□□□□□ -0.33
TMEM39A-210ENST00000490099 KCNA3P22001 575 aa13□□□□□ -0.33
TMEM39A-210ENST00000490099 PARP3Q9Y6F1 533 aa13□□□□□ -0.33
TMEM39A-210ENST00000490099 GOLGB1Q14789 3259 aaKnown RBP13□□□□□ -0.33
TMEM39A-210ENST00000490099 KIAA1551Q9HCM1 1747 aa12.99□□□□□ -0.33
TMEM39A-210ENST00000490099 POLRMTO00411 1230 aaKnown RBP12.99□□□□□ -0.33
TMEM39A-210ENST00000490099 PLEKHF1Q96S99 279 aa12.99□□□□□ -0.33
TMEM39A-210ENST00000490099 A0A0G2JLW4 131 aa12.98□□□□□ -0.33
TMEM39A-210ENST00000490099 KCNQ3O43525 872 aa12.98□□□□□ -0.33
TMEM39A-210ENST00000490099 DPEP1P16444 411 aa12.98□□□□□ -0.33
TMEM39A-210ENST00000490099 USPL1Q5W0Q7 1092 aa12.98□□□□□ -0.33
TMEM39A-210ENST00000490099 TTC5Q8N0Z6 440 aa12.98□□□□□ -0.33
TMEM39A-210ENST00000490099 FMNL2Q96PY5 1086 aa12.98□□□□□ -0.33
TMEM39A-210ENST00000490099 ADCY9O60503 1353 aa12.97□□□□□ -0.33
TMEM39A-210ENST00000490099 BTBD11A6QL63 1104 aa12.97□□□□□ -0.33
TMEM39A-210ENST00000490099 ZPR1O75312 459 aa12.97□□□□□ -0.33
TMEM39A-210ENST00000490099 NFIXQ14938 502 aa12.97□□□□□ -0.33
TMEM39A-210ENST00000490099 COL15A1P39059 1388 aa12.96□□□□□ -0.33
TMEM39A-210ENST00000490099 IL6STP40189 918 aaPredicted RBP12.96□□□□□ -0.33
TMEM39A-210ENST00000490099 RALBP1Q15311 655 aa12.96□□□□□ -0.33
TMEM39A-210ENST00000490099 MCM10Q7L590 875 aa12.96□□□□□ -0.33
TMEM39A-210ENST00000490099 A0A087WZG4 1122 aa12.95□□□□□ -0.34
TMEM39A-210ENST00000490099 CANXP27824 592 aaKnown RBP12.95□□□□□ -0.34
TMEM39A-210ENST00000490099 TAF7Q15545 349 aaPredicted RBP12.95□□□□□ -0.34
TMEM39A-210ENST00000490099 RTF1Q92541 710 aaKnown RBP12.95□□□□□ -0.34
TMEM39A-210ENST00000490099 USP16Q9Y5T5 823 aa12.95□□□□□ -0.34
TMEM39A-210ENST00000490099 A1BGP04217 495 aa12.94□□□□□ -0.34
TMEM39A-210ENST00000490099 SNRPA1P09661 255 aaKnown RBP12.93□□□□□ -0.34
TMEM39A-210ENST00000490099 C1QTNF8P60827 252 aa12.93□□□□□ -0.34
TMEM39A-210ENST00000490099 DCTN1Q14203 1278 aa12.93□□□□□ -0.34
TMEM39A-210ENST00000490099 PIM2Q9P1W9 311 aa12.93□□□□□ -0.34
TMEM39A-210ENST00000490099 BRCA1P38398 1863 aaKnown RBP12.93□□□□□ -0.34
TMEM39A-210ENST00000490099 RGL2O15211 777 aa12.92□□□□□ -0.34
TMEM39A-210ENST00000490099 SERPINB2P05120 415 aa12.92□□□□□ -0.34
TMEM39A-210ENST00000490099 MKRN4PQ13434 485 aaPredicted RBP12.92□□□□□ -0.34
TMEM39A-210ENST00000490099 NFE2L2Q16236 605 aa12.92□□□□□ -0.34
TMEM39A-210ENST00000490099 ATP10DQ9P241 1426 aa12.92□□□□□ -0.34
TMEM39A-210ENST00000490099 NRXN2Q9P2S2 1712 aa12.92□□□□□ -0.34
TMEM39A-210ENST00000490099 WWC3Q9ULE0 1092 aa12.92□□□□□ -0.34
TMEM39A-210ENST00000490099 BCS1LQ9Y276 419 aa12.92□□□□□ -0.34
TMEM39A-210ENST00000490099 N4BP2Q86UW6 1770 aaPredicted RBP12.92□□□□□ -0.34
TMEM39A-210ENST00000490099 PRAMEF22A3QJZ6 481 aa12.91□□□□□ -0.34
TMEM39A-210ENST00000490099 CAMTA2O94983 1202 aa12.91□□□□□ -0.34
TMEM39A-210ENST00000490099 DDX10Q13206 875 aaKnown RBP12.91□□□□□ -0.34
TMEM39A-210ENST00000490099 PNNQ9H307 717 aaKnown RBP12.91□□□□□ -0.34
TMEM39A-210ENST00000490099 ZBTB12Q9Y330 459 aaPredicted RBP12.91□□□□□ -0.34
TMEM39A-210ENST00000490099 NBPF26B4DH59 902 aa12.9□□□□□ -0.34
TMEM39A-210ENST00000490099 CHRNA5P30532 468 aa12.9□□□□□ -0.34
TMEM39A-210ENST00000490099 DALRD3Q5D0E6 543 aaKnown RBP12.9□□□□□ -0.34
TMEM39A-210ENST00000490099 TBC1D9BQ66K14 1250 aa12.9□□□□□ -0.34
TMEM39A-210ENST00000490099 NBPF10Q6P3W6 841 aaKnown RBP12.9□□□□□ -0.34
TMEM39A-210ENST00000490099 NBPF15Q8N660 670 aa12.9□□□□□ -0.34
TMEM39A-210ENST00000490099 TBC1D2BQ9UPU7 963 aa12.9□□□□□ -0.34
TMEM39A-210ENST00000490099 CLEC4GQ6UXB4 293 aa12.89□□□□□ -0.35
TMEM39A-210ENST00000490099 PNISRQ8TF01 805 aaKnown RBP12.89□□□□□ -0.35
TMEM39A-210ENST00000490099 AFDNP55196 1824 aaKnown RBP12.88□□□□□ -0.35
TMEM39A-210ENST00000490099 GIGYF1O75420 1035 aaPredicted RBP12.88□□□□□ -0.35
TMEM39A-210ENST00000490099 NEFMP07197 916 aa12.88□□□□□ -0.35
TMEM39A-210ENST00000490099 EIF4A1P60842 406 aaKnown RBP12.88□□□□□ -0.35
TMEM39A-210ENST00000490099 ARHGAP27Q6ZUM4 889 aa12.88□□□□□ -0.35
TMEM39A-210ENST00000490099 BRIP1Q9BX63 1249 aa12.88□□□□□ -0.35
TMEM39A-210ENST00000490099 MIS18AQ9NYP9 233 aa12.88□□□□□ -0.35
TMEM39A-210ENST00000490099 ARFGEF1Q9Y6D6 1849 aa12.88□□□□□ -0.35
TMEM39A-210ENST00000490099 MYBBP1AQ9BQG0 1328 aaKnown RBP12.88□□□□□ -0.35
TMEM39A-210ENST00000490099 DZIP3Q86Y13 1208 aaKnown RBP12.87□□□□□ -0.35
TMEM39A-210ENST00000490099 PDZRN3Q9UPQ7 1066 aa12.87□□□□□ -0.35
TMEM39A-210ENST00000490099 CARMIL3Q8ND23 1372 aa12.86□□□□□ -0.35
TMEM39A-210ENST00000490099 PRR5LQ6MZQ0 368 aa12.86□□□□□ -0.35
TMEM39A-210ENST00000490099 SETDB2Q96T68 719 aa12.86□□□□□ -0.35
TMEM39A-210ENST00000490099 THUMPD2Q9BTF0 503 aaKnown RBP12.86□□□□□ -0.35
TMEM39A-210ENST00000490099 GPBP1L1Q9HC44 474 aaPredicted RBP12.86□□□□□ -0.35
TMEM39A-210ENST00000490099 BABAM1Q9NWV8 329 aa12.86□□□□□ -0.35
TMEM39A-210ENST00000490099 DLG5Q8TDM6 1919 aa12.86□□□□□ -0.35
TMEM39A-210ENST00000490099 KLRG2A4D1S0 409 aaPredicted RBP12.85□□□□□ -0.35
TMEM39A-210ENST00000490099 TMPOP42166 694 aaKnown RBP12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 60.2 ms