RNA–Protein interactions for RNA: ENST00000489979.1

VARS-227, Transcript of valyl-tRNA synthetase, humanhuman

TSL 3

Gene VARS, Length 658 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-227ENST00000489979 LGR6Q9HBX8 967 aa19.08■□□□□ 0.64
VARS-227ENST00000489979 PCNTO95613 3336 aa19.08■□□□□ 0.64
VARS-227ENST00000489979 HSPA5P11021 654 aaKnown RBP19.07■□□□□ 0.64
VARS-227ENST00000489979 CYP19A1P11511 503 aaPredicted RBP19.07■□□□□ 0.64
VARS-227ENST00000489979 EIF4G2P78344 907 aaKnown RBP eCLIP19.07■□□□□ 0.64
VARS-227ENST00000489979 SLC39A6Q13433 755 aa19.07■□□□□ 0.64
VARS-227ENST00000489979 NFIXQ14938 502 aa19.07■□□□□ 0.64
VARS-227ENST00000489979 SMC1BQ8NDV3 1235 aa19.07■□□□□ 0.64
VARS-227ENST00000489979 VIRMAQ69YN4 1812 aaKnown RBP19.07■□□□□ 0.64
VARS-227ENST00000489979 NARFQ9UHQ1 456 aa19.06■□□□□ 0.64
VARS-227ENST00000489979 ZC3H4Q9UPT8 1303 aaKnown RBP19.05■□□□□ 0.64
VARS-227ENST00000489979 PRELPP51888 382 aa19.05■□□□□ 0.64
VARS-227ENST00000489979 ZBTB1Q9Y2K1 713 aa19.05■□□□□ 0.64
VARS-227ENST00000489979 NRXN2Q9P2S2 1712 aa19.05■□□□□ 0.64
VARS-227ENST00000489979 CCDC88AQ3V6T2 1871 aa19.05■□□□□ 0.64
VARS-227ENST00000489979 COL15A1P39059 1388 aa19.05■□□□□ 0.64
VARS-227ENST00000489979 RNMTO43148 476 aaKnown RBP19.04■□□□□ 0.64
VARS-227ENST00000489979 LMNB1P20700 586 aa19.04■□□□□ 0.64
VARS-227ENST00000489979 BCL2L12Q9HB09 334 aa19.04■□□□□ 0.64
VARS-227ENST00000489979 DLEC1Q9Y238 1755 aa19.04■□□□□ 0.64
VARS-227ENST00000489979 MRC1P22897 1456 aa19.03■□□□□ 0.64
VARS-227ENST00000489979 GLTPD2A6NH11 291 aa19.03■□□□□ 0.64
VARS-227ENST00000489979 SERPINB2P05120 415 aa19.03■□□□□ 0.64
VARS-227ENST00000489979 TTLL6Q8N841 843 aa19.03■□□□□ 0.64
VARS-227ENST00000489979 KNSTRNQ9Y448 316 aa19.03■□□□□ 0.64
VARS-227ENST00000489979 VEGFAP15692 232 aaPredicted RBP19.02■□□□□ 0.64
VARS-227ENST00000489979 C2CD5Q86YS7 1000 aa19.02■□□□□ 0.64
VARS-227ENST00000489979 HMOX1P09601 288 aa19.01■□□□□ 0.63
VARS-227ENST00000489979 TIAM2Q8IVF5 1701 aa19■□□□□ 0.63
VARS-227ENST00000489979 CAPN15O75808 1086 aa19■□□□□ 0.63
VARS-227ENST00000489979 CARMIL3Q8ND23 1372 aa19■□□□□ 0.63
VARS-227ENST00000489979 CLSPNQ9HAW4 1339 aa19■□□□□ 0.63
VARS-227ENST00000489979 H0YIN7 160 aa18.99■□□□□ 0.63
VARS-227ENST00000489979 CANXP27824 592 aaKnown RBP18.99■□□□□ 0.63
VARS-227ENST00000489979 VSIG10Q8N0Z9 540 aa18.99■□□□□ 0.63
VARS-227ENST00000489979 NFKBIEO00221 500 aa18.98■□□□□ 0.63
VARS-227ENST00000489979 MTHFSDQ2M296 383 aaKnown RBP18.98■□□□□ 0.63
VARS-227ENST00000489979 BICDL1Q6ZP65 573 aa18.98■□□□□ 0.63
VARS-227ENST00000489979 TNS4Q8IZW8 715 aa18.98■□□□□ 0.63
VARS-227ENST00000489979 PCGF6Q9BYE7 350 aa18.98■□□□□ 0.63
VARS-227ENST00000489979 AMER1Q5JTC6 1135 aaPredicted RBP18.97■□□□□ 0.63
VARS-227ENST00000489979 UBR2Q8IWV8 1755 aa18.96■□□□□ 0.63
VARS-227ENST00000489979 ANKRD31Q8N7Z5 1873 aa18.95■□□□□ 0.62
VARS-227ENST00000489979 POTECB2RU33 542 aa18.95■□□□□ 0.62
VARS-227ENST00000489979 STARD3NLO95772 234 aa18.95■□□□□ 0.62
VARS-227ENST00000489979 HSPA1AP0DMV8 641 aaKnown RBP18.95■□□□□ 0.62
VARS-227ENST00000489979 HSPA1BP0DMV9 641 aaKnown RBP18.95■□□□□ 0.62
VARS-227ENST00000489979 EIF5P55010 431 aaKnown RBP18.95■□□□□ 0.62
VARS-227ENST00000489979 ZNF622Q969S3 477 aaKnown RBP eCLIP18.95■□□□□ 0.628e-10■□□□□ 9.5
VARS-227ENST00000489979 A0A087WZG4 1122 aa18.94■□□□□ 0.62
VARS-227ENST00000489979 TBC1D9BQ66K14 1250 aa18.94■□□□□ 0.62
VARS-227ENST00000489979 TTC5Q8N0Z6 440 aa18.94■□□□□ 0.62
VARS-227ENST00000489979 DPY19L2Q6NUT2 758 aa18.93■□□□□ 0.62
VARS-227ENST00000489979 ZNF219Q9P2Y4 722 aaPredicted RBP18.93■□□□□ 0.62
VARS-227ENST00000489979 DICER1Q9UPY3 1922 aaKnown RBP18.93■□□□□ 0.62
VARS-227ENST00000489979 C21orf2O43822 256 aa18.92■□□□□ 0.62
VARS-227ENST00000489979 DIAPH1O60610 1272 aaKnown RBP18.92■□□□□ 0.62
VARS-227ENST00000489979 CCDC24Q8N4L8 307 aa18.92■□□□□ 0.62
VARS-227ENST00000489979 FER1L6Q2WGJ9 1857 aa18.92■□□□□ 0.62
VARS-227ENST00000489979 COL11A2P13942 1736 aaPredicted RBP18.91■□□□□ 0.62
VARS-227ENST00000489979 PDE6BP35913 854 aa18.91■□□□□ 0.62
VARS-227ENST00000489979 ERFEQ4G0M1 354 aa18.91■□□□□ 0.62
VARS-227ENST00000489979 PRR5LQ6MZQ0 368 aa18.91■□□□□ 0.62
VARS-227ENST00000489979 BRIP1Q9BX63 1249 aa18.91■□□□□ 0.62
VARS-227ENST00000489979 PDZRN3Q9UPQ7 1066 aa18.91■□□□□ 0.62
VARS-227ENST00000489979 ZNF330Q9Y3S2 320 aaPredicted RBP18.91■□□□□ 0.62
VARS-227ENST00000489979 SCN7AQ01118 1682 aa18.9■□□□□ 0.62
VARS-227ENST00000489979 ZNF496Q96IT1 587 aaPredicted RBP18.9■□□□□ 0.62
VARS-227ENST00000489979 TBC1D2BQ9UPU7 963 aa18.9■□□□□ 0.62
VARS-227ENST00000489979 HEG1Q9ULI3 1381 aa18.89■□□□□ 0.61
VARS-227ENST00000489979 TEFQ10587 303 aa18.88■□□□□ 0.61
VARS-227ENST00000489979 ZNF790Q6PG37 636 aa18.88■□□□□ 0.61
VARS-227ENST00000489979 IL17REQ8NFR9 667 aa18.88■□□□□ 0.61
VARS-227ENST00000489979 TEX13AQ9BXU3 409 aaPredicted RBP18.88■□□□□ 0.61
VARS-227ENST00000489979 CACNA1SQ13698 1873 aa18.88■□□□□ 0.61
VARS-227ENST00000489979 IL6STP40189 918 aaPredicted RBP18.87■□□□□ 0.61
VARS-227ENST00000489979 CC2D1BQ5T0F9 858 aaKnown RBP18.87■□□□□ 0.61
VARS-227ENST00000489979 SLX4Q8IY92 1834 aa18.87■□□□□ 0.61
VARS-227ENST00000489979 TAOK3Q9H2K8 898 aa18.87■□□□□ 0.61
VARS-227ENST00000489979 SIPA1L3O60292 1781 aaPredicted RBP18.86■□□□□ 0.61
VARS-227ENST00000489979 KIF7Q2M1P5 1343 aa18.86■□□□□ 0.61
VARS-227ENST00000489979 A1BGP04217 495 aa18.86■□□□□ 0.61
VARS-227ENST00000489979 CHADLQ6NUI6 762 aa18.86■□□□□ 0.61
VARS-227ENST00000489979 SETDB2Q96T68 719 aa18.86■□□□□ 0.61
VARS-227ENST00000489979 LTBP3Q9NS15 1303 aa18.85■□□□□ 0.61
VARS-227ENST00000489979 GNAT3A8MTJ3 354 aa18.85■□□□□ 0.61
VARS-227ENST00000489979 NPHP1O15259 732 aa18.85■□□□□ 0.61
VARS-227ENST00000489979 DDNO94850 711 aaPredicted RBP18.85■□□□□ 0.61
VARS-227ENST00000489979 POTEIP0CG38 1075 aa18.85■□□□□ 0.61
VARS-227ENST00000489979 POTEJP0CG39 1038 aa18.85■□□□□ 0.61
VARS-227ENST00000489979 CNBD1Q8NA66 436 aa18.85■□□□□ 0.61
VARS-227ENST00000489979 CNKSR1Q969H4 720 aa18.85■□□□□ 0.61
VARS-227ENST00000489979 PER1O15534 1290 aaPredicted RBP18.84■□□□□ 0.61
VARS-227ENST00000489979 CAMTA2O94983 1202 aa18.84■□□□□ 0.61
VARS-227ENST00000489979 NPM2Q86SE8 214 aaKnown RBP18.84■□□□□ 0.61
VARS-227ENST00000489979 GAS2L2Q8NHY3 880 aa18.84■□□□□ 0.61
VARS-227ENST00000489979 FMNL2Q96PY5 1086 aa18.84■□□□□ 0.61
VARS-227ENST00000489979 CREBZFQ9NS37 354 aa18.84■□□□□ 0.61
VARS-227ENST00000489979 MKRN1Q9UHC7 482 aaKnown RBP18.84■□□□□ 0.61
VARS-227ENST00000489979 U2SURPO15042 1029 aaKnown RBP18.83■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 73.3 ms