RNA–Protein interactions for RNA: ENST00000487284.2

CUX1-209, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 1,566 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-209ENST00000487284 ATG3Q9NT62 314 aa18.08■□□□□ 0.48
CUX1-209ENST00000487284 HEG1Q9ULI3 1381 aa18.08■□□□□ 0.48
CUX1-209ENST00000487284 FAM196AQ6ZSG2 479 aa18.07■□□□□ 0.48
CUX1-209ENST00000487284 FMNL2Q96PY5 1086 aa18.06■□□□□ 0.48
CUX1-209ENST00000487284 PTCD1O75127 700 aaKnown RBP18.05■□□□□ 0.48
CUX1-209ENST00000487284 CENPQQ7L2Z9 268 aaPredicted RBP18.05■□□□□ 0.48
CUX1-209ENST00000487284 PRAMEF22A3QJZ6 481 aa18.04■□□□□ 0.48
CUX1-209ENST00000487284 GIGYF1O75420 1035 aaPredicted RBP18.04■□□□□ 0.48
CUX1-209ENST00000487284 DDX19BQ9UMR2 479 aa18.04■□□□□ 0.48
CUX1-209ENST00000487284 ABCC4O15439 1325 aa18.04■□□□□ 0.48
CUX1-209ENST00000487284 LAMB4A4D0S4 1761 aa18.04■□□□□ 0.48
CUX1-209ENST00000487284 TCERG1O14776 1098 aaKnown RBP18.04■□□□□ 0.48
CUX1-209ENST00000487284 TMEM57Q8N5G2 664 aa18.04■□□□□ 0.48
CUX1-209ENST00000487284 HOXB7P09629 217 aa18.03■□□□□ 0.48
CUX1-209ENST00000487284 API5Q9BZZ5 524 aaKnown RBP18.03■□□□□ 0.48
CUX1-209ENST00000487284 RBM42Q9BTD8 480 aaKnown RBP18.02■□□□□ 0.48
CUX1-209ENST00000487284 TSHZ2Q9NRE2 1034 aa18.02■□□□□ 0.48
CUX1-209ENST00000487284 PALLDQ8WX93 1383 aa18.02■□□□□ 0.47
CUX1-209ENST00000487284 TRIM37O94972 964 aa18.01■□□□□ 0.47
CUX1-209ENST00000487284 SNRPA1P09661 255 aaKnown RBP18.01■□□□□ 0.47
CUX1-209ENST00000487284 ITPRIPQ8IWB1 547 aa18.01■□□□□ 0.47
CUX1-209ENST00000487284 NECTIN2Q92692 538 aa18.01■□□□□ 0.47
CUX1-209ENST00000487284 BCL11BQ9C0K0 894 aaPredicted RBP18.01■□□□□ 0.47
CUX1-209ENST00000487284 TJP1Q07157 1748 aa18.01■□□□□ 0.47
CUX1-209ENST00000487284 EIF2S2P20042 333 aaKnown RBP18■□□□□ 0.47
CUX1-209ENST00000487284 HDGFL1Q5TGJ6 251 aa18■□□□□ 0.47
CUX1-209ENST00000487284 SLC4A9Q96Q91 983 aa18■□□□□ 0.47
CUX1-209ENST00000487284 PTPRCP08575 1304 aa18■□□□□ 0.47
CUX1-209ENST00000487284 ILDR2Q71H61 639 aa18■□□□□ 0.47
CUX1-209ENST00000487284 SMARCC1Q92922 1105 aaPredicted RBP18■□□□□ 0.47
CUX1-209ENST00000487284 LY75O60449 1722 aa17.99■□□□□ 0.47
CUX1-209ENST00000487284 USP16Q9Y5T5 823 aa17.99■□□□□ 0.47
CUX1-209ENST00000487284 TNS1Q9HBL0 1735 aaKnown RBP17.99■□□□□ 0.47
CUX1-209ENST00000487284 CICQ96RK0 1608 aaPredicted RBP17.98■□□□□ 0.47
CUX1-209ENST00000487284 CCDC30Q5VVM6 783 aa17.98■□□□□ 0.47
CUX1-209ENST00000487284 VSIG10Q8N0Z9 540 aa17.98■□□□□ 0.47
CUX1-209ENST00000487284 PCDHB15Q9Y5E8 787 aa17.98■□□□□ 0.47
CUX1-209ENST00000487284 DNAJC10Q8IXB1 793 aa17.97■□□□□ 0.47
CUX1-209ENST00000487284 ZBTB40Q9NUA8 1239 aa17.97■□□□□ 0.47
CUX1-209ENST00000487284 ZNF831Q5JPB2 1677 aa17.97■□□□□ 0.47
CUX1-209ENST00000487284 LOC102724428A0A0B4J2F2 783 aa17.96■□□□□ 0.47
CUX1-209ENST00000487284 IGHDP01880 384 aa17.96■□□□□ 0.47
CUX1-209ENST00000487284 SLC4A2P04920 1241 aa17.96■□□□□ 0.47
CUX1-209ENST00000487284 SIK1P57059 783 aa17.96■□□□□ 0.47
CUX1-209ENST00000487284 STK31Q9BXU1 1019 aa17.96■□□□□ 0.47
CUX1-209ENST00000487284 CHMP4BQ9H444 224 aaKnown RBP17.96■□□□□ 0.47
CUX1-209ENST00000487284 CHPF2Q9P2E5 772 aa17.96■□□□□ 0.46
CUX1-209ENST00000487284 COL5A3P25940 1745 aaPredicted RBP17.95■□□□□ 0.46
CUX1-209ENST00000487284 INTS3Q68E01 1043 aaKnown RBP17.95■□□□□ 0.46
CUX1-209ENST00000487284 CHMP4AQ9BY43 222 aa17.95■□□□□ 0.46
CUX1-209ENST00000487284 ANXA1P04083 346 aa17.94■□□□□ 0.46
CUX1-209ENST00000487284 ATP6V1AP38606 617 aa17.94■□□□□ 0.46
CUX1-209ENST00000487284 PXDNLA1KZ92 1463 aa17.93■□□□□ 0.46
CUX1-209ENST00000487284 ZBTB7BO15156 539 aaPredicted RBP17.93■□□□□ 0.46
CUX1-209ENST00000487284 ITPK1Q13572 414 aa17.93■□□□□ 0.46
CUX1-209ENST00000487284 PROSER3Q2NL68 480 aa17.93■□□□□ 0.46
CUX1-209ENST00000487284 G2E3Q7L622 706 aa17.93■□□□□ 0.46
CUX1-209ENST00000487284 TEX13AQ9BXU3 409 aaPredicted RBP17.93■□□□□ 0.46
CUX1-209ENST00000487284 PIP4K2AP48426 406 aaPredicted RBP17.92■□□□□ 0.46
CUX1-209ENST00000487284 KCNQ4P56696 695 aa17.92■□□□□ 0.46
CUX1-209ENST00000487284 DBF4Q9UBU7 674 aaPredicted RBP17.92■□□□□ 0.46
CUX1-209ENST00000487284 TAF1LQ8IZX4 1826 aa17.92■□□□□ 0.46
CUX1-209ENST00000487284 A1BGP04217 495 aa17.91■□□□□ 0.46
CUX1-209ENST00000487284 PDIA6Q15084 440 aa17.91■□□□□ 0.46
CUX1-209ENST00000487284 RWDD1Q9H446 243 aaPredicted RBP17.91■□□□□ 0.46
CUX1-209ENST00000487284 MYH14Q7Z406 1995 aaKnown RBP17.91■□□□□ 0.46
CUX1-209ENST00000487284 STARD3NLO95772 234 aa17.91■□□□□ 0.46
CUX1-209ENST00000487284 CYP19A1P11511 503 aaPredicted RBP17.91■□□□□ 0.46
CUX1-209ENST00000487284 HDAC1Q13547 482 aaPredicted RBP17.91■□□□□ 0.46
CUX1-209ENST00000487284 DDX21Q9NR30 783 aaKnown RBP eCLIP17.91■□□□□ 0.46
CUX1-209ENST00000487284 CCNL1Q9UK58 526 aaPredicted RBP17.91■□□□□ 0.46
CUX1-209ENST00000487284 ERBB4Q15303 1308 aa17.9■□□□□ 0.46
CUX1-209ENST00000487284 NBPF26B4DH59 902 aa17.9■□□□□ 0.46
CUX1-209ENST00000487284 APBA3O96018 575 aa17.9■□□□□ 0.46
CUX1-209ENST00000487284 FLIIQ13045 1269 aa17.9■□□□□ 0.46
CUX1-209ENST00000487284 NBPF14Q5TI25 921 aa17.9■□□□□ 0.46
CUX1-209ENST00000487284 NBPF10Q6P3W6 841 aaKnown RBP17.9■□□□□ 0.46
CUX1-209ENST00000487284 NBPF15Q8N660 670 aa17.9■□□□□ 0.46
CUX1-209ENST00000487284 PHAXQ9H814 394 aaKnown RBP17.9■□□□□ 0.46
CUX1-209ENST00000487284 RREB1Q92766 1687 aa17.89■□□□□ 0.46
CUX1-209ENST00000487284 MYL6BP14649 208 aa17.89■□□□□ 0.45
CUX1-209ENST00000487284 LINC00116Q8NCU8 138 aa17.89■□□□□ 0.45
CUX1-209ENST00000487284 RGPD3A6NKT7 1758 aaPredicted RBP17.88■□□□□ 0.45
CUX1-209ENST00000487284 RGPD4Q7Z3J3 1758 aa17.88■□□□□ 0.45
CUX1-209ENST00000487284 PLSCR1O15162 318 aa17.87■□□□□ 0.45
CUX1-209ENST00000487284 LRP10Q7Z4F1 713 aa17.87■□□□□ 0.45
CUX1-209ENST00000487284 LRRC4BQ9NT99 713 aa17.87■□□□□ 0.45
CUX1-209ENST00000487284 HYPKQ9NX55 129 aa17.87■□□□□ 0.45
CUX1-209ENST00000487284 ZBTB1Q9Y2K1 713 aa17.87■□□□□ 0.45
CUX1-209ENST00000487284 CCT4P50991 539 aaKnown RBP17.87■□□□□ 0.45
CUX1-209ENST00000487284 CRKLP46109 303 aaKnown RBP17.86■□□□□ 0.45
CUX1-209ENST00000487284 FKBP5Q13451 457 aaPredicted RBP17.86■□□□□ 0.45
CUX1-209ENST00000487284 TXNRD1Q16881 649 aa17.86■□□□□ 0.45
CUX1-209ENST00000487284 SKAP1Q86WV1 359 aa17.86■□□□□ 0.45
CUX1-209ENST00000487284 PROM2Q8N271 834 aa17.86■□□□□ 0.45
CUX1-209ENST00000487284 CCDC87Q9NVE4 849 aa17.86■□□□□ 0.45
CUX1-209ENST00000487284 C4BP0C0L5 1744 aa17.85■□□□□ 0.45
CUX1-209ENST00000487284 INTS5Q6P9B9 1019 aaKnown RBP17.85■□□□□ 0.45
CUX1-209ENST00000487284 ATP10DQ9P241 1426 aa17.85■□□□□ 0.45
CUX1-209ENST00000487284 F6X3S4 739 aa17.84■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 75.7 ms