RNA–Protein interactions for RNA: ENST00000487188.1

VPS13D-209, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 3,990 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-209ENST00000487188 KMT5BQ4FZB7 885 aa7.39□□□□□ -1.23
VPS13D-209ENST00000487188 NUTM2DQ5VT03 806 aaPredicted RBP7.39□□□□□ -1.23
VPS13D-209ENST00000487188 FERMT3Q86UX7 667 aa7.39□□□□□ -1.23
VPS13D-209ENST00000487188 TXLNBQ8N3L3 684 aa7.39□□□□□ -1.23
VPS13D-209ENST00000487188 NRBP1Q9UHY1 535 aa7.39□□□□□ -1.23
VPS13D-209ENST00000487188 AGLP35573 1532 aa7.39□□□□□ -1.23
VPS13D-209ENST00000487188 ZNF165P49910 485 aa7.38□□□□□ -1.23
VPS13D-209ENST00000487188 BRPF1P55201 1214 aaPredicted RBP7.38□□□□□ -1.23
VPS13D-209ENST00000487188 FBXO38Q6PIJ6 1188 aa7.38□□□□□ -1.23
VPS13D-209ENST00000487188 SUGP2Q8IX01 1082 aaKnown RBP eCLIP7.38□□□□□ -1.23
VPS13D-209ENST00000487188 LRRCC1Q9C099 1032 aa7.38□□□□□ -1.23
VPS13D-209ENST00000487188 RASSF4Q9H2L5 321 aa7.38□□□□□ -1.23
VPS13D-209ENST00000487188 LIMCH1Q9UPQ0 1083 aa7.38□□□□□ -1.23
VPS13D-209ENST00000487188 NEMFO60524 1076 aa7.38□□□□□ -1.23
VPS13D-209ENST00000487188 FAM193AP78312 1265 aa7.38□□□□□ -1.23
VPS13D-209ENST00000487188 MEIS3Q99687 375 aa7.38□□□□□ -1.23
VPS13D-209ENST00000487188 CBX8Q9HC52 389 aa7.38□□□□□ -1.23
VPS13D-209ENST00000487188 ST7Q9NRC1 585 aa7.38□□□□□ -1.23
VPS13D-209ENST00000487188 FER1L4A9Z1Z3 1794 aa7.38□□□□□ -1.23
VPS13D-209ENST00000487188 SKILP12757 684 aa7.38□□□□□ -1.23
VPS13D-209ENST00000487188 GJB2P29033 226 aa7.38□□□□□ -1.23
VPS13D-209ENST00000487188 HNRNPH2P55795 449 aaKnown RBP7.38□□□□□ -1.23
VPS13D-209ENST00000487188 GNL2Q13823 731 aaKnown RBP7.38□□□□□ -1.23
VPS13D-209ENST00000487188 ARHGAP30Q7Z6I6 1101 aaPredicted RBP7.38□□□□□ -1.23
VPS13D-209ENST00000487188 C8orf58Q8NAV2 365 aa7.38□□□□□ -1.23
VPS13D-209ENST00000487188 ADGRB2O60241 1585 aa7.38□□□□□ -1.23
VPS13D-209ENST00000487188 AP5Z1O43299 807 aa7.37□□□□□ -1.23
VPS13D-209ENST00000487188 NOM1Q5C9Z4 860 aaKnown RBP7.37□□□□□ -1.23
VPS13D-209ENST00000487188 AFAP1Q8N556 730 aa7.37□□□□□ -1.23
VPS13D-209ENST00000487188 RIMS1Q86UR5 1692 aaKnown RBP7.37□□□□□ -1.23
VPS13D-209ENST00000487188 PTPRMP28827 1452 aa7.37□□□□□ -1.23
VPS13D-209ENST00000487188 C10orf67Q8IYJ2 551 aa7.37□□□□□ -1.23
VPS13D-209ENST00000487188 UBXN4Q92575 508 aa7.37□□□□□ -1.23
VPS13D-209ENST00000487188 SPATA32Q96LK8 384 aa7.37□□□□□ -1.23
VPS13D-209ENST00000487188 AK7Q96M32 723 aa7.37□□□□□ -1.23
VPS13D-209ENST00000487188 DNAJC25Q9H1X3 360 aa7.37□□□□□ -1.23
VPS13D-209ENST00000487188 RSPH14Q9UHP6 348 aa7.37□□□□□ -1.23
VPS13D-209ENST00000487188 PIK3R4Q99570 1358 aa7.37□□□□□ -1.23
VPS13D-209ENST00000487188 CLTCL1P53675 1640 aa7.37□□□□□ -1.23
VPS13D-209ENST00000487188 CHMLP26374 656 aa7.37□□□□□ -1.23
VPS13D-209ENST00000487188 SLC20A2Q08357 652 aa7.37□□□□□ -1.23
VPS13D-209ENST00000487188 SNW1Q13573 536 aaKnown RBP7.37□□□□□ -1.23
VPS13D-209ENST00000487188 LARP1BQ659C4 914 aaKnown RBP7.37□□□□□ -1.23
VPS13D-209ENST00000487188 NEK11Q8NG66 645 aa7.37□□□□□ -1.23
VPS13D-209ENST00000487188 DDX19AQ9NUU7 478 aaKnown RBP7.37□□□□□ -1.23
VPS13D-209ENST00000487188 DACT1Q9NYF0 836 aa7.37□□□□□ -1.23
VPS13D-209ENST00000487188 MSH6P52701 1360 aa7.37□□□□□ -1.23
VPS13D-209ENST00000487188 ATP7AQ04656 1500 aa7.37□□□□□ -1.23
VPS13D-209ENST00000487188 MAP4K4O95819 1239 aaPredicted RBP7.36□□□□□ -1.23
VPS13D-209ENST00000487188 CASTP20810 708 aaKnown RBP7.36□□□□□ -1.23
VPS13D-209ENST00000487188 GTF2A1P52655 376 aaPredicted RBP7.36□□□□□ -1.23
VPS13D-209ENST00000487188 AK2P54819 239 aa7.36□□□□□ -1.23
VPS13D-209ENST00000487188 FBXW7Q969H0 707 aa7.36□□□□□ -1.23
VPS13D-209ENST00000487188 MINK1Q8N4C8 1332 aaPredicted RBP7.36□□□□□ -1.23
VPS13D-209ENST00000487188 RAD50Q92878 1312 aa7.36□□□□□ -1.23
VPS13D-209ENST00000487188 KRBA2Q6ZNG9 492 aa7.36□□□□□ -1.23
VPS13D-209ENST00000487188 CCDC191Q8NCU4 936 aa7.36□□□□□ -1.23
VPS13D-209ENST00000487188 CACTINQ8WUQ7 758 aaKnown RBP7.36□□□□□ -1.23
VPS13D-209ENST00000487188 TMX1Q9H3N1 280 aa7.36□□□□□ -1.23
VPS13D-209ENST00000487188 LRRFIP2Q9Y608 721 aaKnown RBP7.36□□□□□ -1.23
VPS13D-209ENST00000487188 MRVI1Q9Y6F6 885 aa7.36□□□□□ -1.23
VPS13D-209ENST00000487188 CCDC69A6NI79 296 aa7.36□□□□□ -1.23
VPS13D-209ENST00000487188 DTNBO60941 627 aa7.36□□□□□ -1.23
VPS13D-209ENST00000487188 GNAI2P04899 355 aa7.36□□□□□ -1.23
VPS13D-209ENST00000487188 RAD51AP2Q09MP3 1159 aa7.36□□□□□ -1.23
VPS13D-209ENST00000487188 ARHGAP29Q52LW3 1261 aa7.36□□□□□ -1.23
VPS13D-209ENST00000487188 ZFP91Q96JP5 570 aaPredicted RBP7.36□□□□□ -1.23
VPS13D-209ENST00000487188 KIF24Q5T7B8 1368 aa7.36□□□□□ -1.23
VPS13D-209ENST00000487188 PDCP20941 246 aa7.35□□□□□ -1.23
VPS13D-209ENST00000487188 OS9Q13438 667 aaPredicted RBP7.35□□□□□ -1.23
VPS13D-209ENST00000487188 ZBTB9Q96C00 473 aa7.35□□□□□ -1.23
VPS13D-209ENST00000487188 RPAP1Q9BWH6 1393 aaPredicted RBP7.35□□□□□ -1.23
VPS13D-209ENST00000487188 DCTN1Q14203 1278 aa7.35□□□□□ -1.23
VPS13D-209ENST00000487188 KRT24Q2M2I5 525 aa7.35□□□□□ -1.23
VPS13D-209ENST00000487188 JAKMIP1Q96N16 626 aaKnown RBP7.35□□□□□ -1.23
VPS13D-209ENST00000487188 PDRG1Q9NUG6 133 aa7.35□□□□□ -1.23
VPS13D-209ENST00000487188 CAPN2P17655 700 aa7.35□□□□□ -1.23
VPS13D-209ENST00000487188 ERCC6LQ2NKX8 1250 aa7.35□□□□□ -1.23
VPS13D-209ENST00000487188 LEKR1Q6ZMV7 388 aa7.35□□□□□ -1.23
VPS13D-209ENST00000487188 ZSCAN31Q96LW9 406 aaPredicted RBP7.35□□□□□ -1.23
VPS13D-209ENST00000487188 FEZ2Q9UHY8 353 aaPredicted RBP7.35□□□□□ -1.23
VPS13D-209ENST00000487188 MYOM2P54296 1465 aa7.35□□□□□ -1.23
VPS13D-209ENST00000487188 FAM135BQ49AJ0 1406 aa7.35□□□□□ -1.23
VPS13D-209ENST00000487188 A0A1W2PP64 1363 aa7.35□□□□□ -1.23
VPS13D-209ENST00000487188 RTL1A6NKG5 1358 aa7.35□□□□□ -1.23
VPS13D-209ENST00000487188 LIG1P18858 919 aa7.35□□□□□ -1.23
VPS13D-209ENST00000487188 CYP2C19P33261 490 aa7.35□□□□□ -1.23
VPS13D-209ENST00000487188 SLFNL1Q499Z3 407 aa7.35□□□□□ -1.23
VPS13D-209ENST00000487188 PHACTR3Q96KR7 559 aa7.35□□□□□ -1.23
VPS13D-209ENST00000487188 FUCA2Q9BTY2 467 aa7.35□□□□□ -1.23
VPS13D-209ENST00000487188 STK31Q9BXU1 1019 aa7.35□□□□□ -1.23
VPS13D-209ENST00000487188 SCAND2PQ9GZW5 306 aaPredicted RBP7.35□□□□□ -1.23
VPS13D-209ENST00000487188 CYP46A1Q9Y6A2 500 aa7.35□□□□□ -1.23
VPS13D-209ENST00000487188 SSH2Q76I76 1423 aa7.34□□□□□ -1.23
VPS13D-209ENST00000487188 APPP05067 770 aa7.34□□□□□ -1.23
VPS13D-209ENST00000487188 ZKSCAN1P17029 563 aaPredicted RBP7.34□□□□□ -1.23
VPS13D-209ENST00000487188 AEBP2Q6ZN18 517 aaPredicted RBP7.34□□□□□ -1.23
VPS13D-209ENST00000487188 IL1RAPL2Q9NP60 686 aa7.34□□□□□ -1.23
VPS13D-209ENST00000487188 TFIP11Q9UBB9 837 aaKnown RBP7.34□□□□□ -1.23
VPS13D-209ENST00000487188 KIAA1210Q9ULL0 1709 aa7.34□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms