RNA–Protein interactions for RNA: ENST00000486741.5

HMGN1-216, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 2

Gene HMGN1, Length 4,299 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-216ENST00000486741 FERMT3Q86UX7 667 aa15.87■□□□□ 0.13
HMGN1-216ENST00000486741 KIDINS220Q9ULH0 1771 aa15.87■□□□□ 0.13
HMGN1-216ENST00000486741 NBPF7P0C2Y1 421 aaPredicted RBP15.87■□□□□ 0.13
HMGN1-216ENST00000486741 RNMTO43148 476 aaKnown RBP15.87■□□□□ 0.13
HMGN1-216ENST00000486741 PSMA5P28066 241 aa15.87■□□□□ 0.13
HMGN1-216ENST00000486741 VPS37DQ86XT2 251 aa15.87■□□□□ 0.13
HMGN1-216ENST00000486741 TMOD3Q9NYL9 352 aa15.87■□□□□ 0.13
HMGN1-216ENST00000486741 CEP126Q9P2H0 1117 aa15.87■□□□□ 0.13
HMGN1-216ENST00000486741 CIZ1Q9ULV3 898 aaPredicted RBP15.87■□□□□ 0.13
HMGN1-216ENST00000486741 KIAA2012Q0VF49 1180 aa15.86■□□□□ 0.13
HMGN1-216ENST00000486741 CWC22Q9HCG8 908 aaKnown RBP15.86■□□□□ 0.13
HMGN1-216ENST00000486741 PDRG1Q9NUG6 133 aa15.86■□□□□ 0.13
HMGN1-216ENST00000486741 CCDC83Q8IWF9 413 aa15.86■□□□□ 0.13
HMGN1-216ENST00000486741 TCEANC2Q96MN5 208 aa15.86■□□□□ 0.13
HMGN1-216ENST00000486741 ECHDC1Q9NTX5 307 aa15.86■□□□□ 0.13
HMGN1-216ENST00000486741 PPFIA3O75145 1194 aa15.86■□□□□ 0.13
HMGN1-216ENST00000486741 KIF3AQ9Y496 699 aa15.86■□□□□ 0.13
HMGN1-216ENST00000486741 TRDNQ13061 729 aa15.85■□□□□ 0.13
HMGN1-216ENST00000486741 KLHDC4Q8TBB5 520 aa15.85■□□□□ 0.13
HMGN1-216ENST00000486741 LRRFIP1Q32MZ4 808 aaKnown RBP15.85■□□□□ 0.13
HMGN1-216ENST00000486741 BLOC1S2Q6QNY1 142 aa15.85■□□□□ 0.13
HMGN1-216ENST00000486741 KSR2Q6VAB6 950 aa15.85■□□□□ 0.13
HMGN1-216ENST00000486741 SNRPA1P09661 255 aaKnown RBP15.85■□□□□ 0.13
HMGN1-216ENST00000486741 TTC39AQ5SRH9 613 aa15.85■□□□□ 0.13
HMGN1-216ENST00000486741 RALYLQ86SE5 291 aaKnown RBP15.85■□□□□ 0.13
HMGN1-216ENST00000486741 PHF23Q9BUL5 403 aaPredicted RBP15.85■□□□□ 0.13
HMGN1-216ENST00000486741 SNRKQ9NRH2 765 aa15.85■□□□□ 0.13
HMGN1-216ENST00000486741 FAM135BQ49AJ0 1406 aa15.84■□□□□ 0.13
HMGN1-216ENST00000486741 NPHP3Q7Z494 1330 aa15.84■□□□□ 0.13
HMGN1-216ENST00000486741 GRM8O00222 908 aa15.84■□□□□ 0.13
HMGN1-216ENST00000486741 ABCC4O15439 1325 aa15.84■□□□□ 0.13
HMGN1-216ENST00000486741 TULP4Q9NRJ4 1543 aa15.84■□□□□ 0.13
HMGN1-216ENST00000486741 HIP1O00291 1037 aa15.84■□□□□ 0.13
HMGN1-216ENST00000486741 NCBP3Q53F19 620 aaKnown RBP15.84■□□□□ 0.13
HMGN1-216ENST00000486741 NFXL1Q6ZNB6 911 aa15.84■□□□□ 0.13
HMGN1-216ENST00000486741 GRPEL1Q9HAV7 217 aa15.84■□□□□ 0.13
HMGN1-216ENST00000486741 CCDC158Q5M9N0 1113 aa15.83■□□□□ 0.13
HMGN1-216ENST00000486741 ALKQ9UM73 1620 aa15.83■□□□□ 0.13
HMGN1-216ENST00000486741 PLEKHG1Q9ULL1 1385 aa15.83■□□□□ 0.13
HMGN1-216ENST00000486741 DDX11Q96FC9 970 aa15.83■□□□□ 0.12
HMGN1-216ENST00000486741 ESYT1Q9BSJ8 1104 aa15.83■□□□□ 0.12
HMGN1-216ENST00000486741 LARP1BQ659C4 914 aaKnown RBP15.82■□□□□ 0.12
HMGN1-216ENST00000486741 BICDL1Q6ZP65 573 aa15.82■□□□□ 0.12
HMGN1-216ENST00000486741 SIRT2Q8IXJ6 389 aa15.82■□□□□ 0.12
HMGN1-216ENST00000486741 USP6P35125 1406 aa15.82■□□□□ 0.12
HMGN1-216ENST00000486741 ZGPATQ8N5A5 531 aaKnown RBP15.82■□□□□ 0.12
HMGN1-216ENST00000486741 ZNF853P0CG23 659 aa15.82■□□□□ 0.12
HMGN1-216ENST00000486741 ATP7BP35670 1465 aa15.82■□□□□ 0.12
HMGN1-216ENST00000486741 AATKQ6ZMQ8 1374 aa15.82■□□□□ 0.12
HMGN1-216ENST00000486741 ZCRB1Q8TBF4 217 aaKnown RBP15.82■□□□□ 0.12
HMGN1-216ENST00000486741 GSPT1P15170 499 aaKnown RBP15.81■□□□□ 0.12
HMGN1-216ENST00000486741 RRP12Q5JTH9 1297 aaKnown RBP15.81■□□□□ 0.12
HMGN1-216ENST00000486741 DDX46Q7L014 1031 aaKnown RBP15.81■□□□□ 0.12
HMGN1-216ENST00000486741 TMX3Q96JJ7 454 aa15.81■□□□□ 0.12
HMGN1-216ENST00000486741 QRICH2Q9H0J4 1663 aa15.81■□□□□ 0.12
HMGN1-216ENST00000486741 DIP2CQ9Y2E4 1556 aa15.8■□□□□ 0.12
HMGN1-216ENST00000486741 EIF4A1P60842 406 aaKnown RBP15.8■□□□□ 0.12
HMGN1-216ENST00000486741 LMBR1LQ6UX01 489 aa15.8■□□□□ 0.12
HMGN1-216ENST00000486741 STARD3NLO95772 234 aa15.8■□□□□ 0.12
HMGN1-216ENST00000486741 USP26Q9BXU7 913 aa15.8■□□□□ 0.12
HMGN1-216ENST00000486741 LMTK2Q8IWU2 1503 aa15.8■□□□□ 0.12
HMGN1-216ENST00000486741 WDR33Q9C0J8 1336 aaKnown RBP15.8■□□□□ 0.12
HMGN1-216ENST00000486741 A0A0U1RQG5 324 aaPredicted RBP15.8■□□□□ 0.12
HMGN1-216ENST00000486741 LINS1Q8NG48 757 aa15.8■□□□□ 0.12
HMGN1-216ENST00000486741 USP44Q9H0E7 712 aa15.8■□□□□ 0.12
HMGN1-216ENST00000486741 IDH1O75874 414 aaKnown RBP15.8■□□□□ 0.12
HMGN1-216ENST00000486741 BAG4O95429 457 aaKnown RBP15.8■□□□□ 0.12
HMGN1-216ENST00000486741 CPA1P15085 419 aa15.8■□□□□ 0.12
HMGN1-216ENST00000486741 ZNF790Q6PG37 636 aa15.79■□□□□ 0.12
HMGN1-216ENST00000486741 SYCE3A1L190 88 aa15.79■□□□□ 0.12
HMGN1-216ENST00000486741 PRAMEF22A3QJZ6 481 aa15.79■□□□□ 0.12
HMGN1-216ENST00000486741 GOLIM4O00461 696 aa15.79■□□□□ 0.12
HMGN1-216ENST00000486741 SOS1Q07889 1333 aaPredicted RBP15.79■□□□□ 0.12
HMGN1-216ENST00000486741 BICC1Q9H694 974 aaKnown RBP15.79■□□□□ 0.12
HMGN1-216ENST00000486741 MTMR7Q9Y216 660 aa15.79■□□□□ 0.12
HMGN1-216ENST00000486741 NLRP1Q9C000 1473 aa15.79■□□□□ 0.12
HMGN1-216ENST00000486741 METTL24Q5JXM2 366 aa15.78■□□□□ 0.12
HMGN1-216ENST00000486741 SYNE3Q6ZMZ3 975 aa15.78■□□□□ 0.12
HMGN1-216ENST00000486741 MPHOSPH8Q99549 860 aa15.78■□□□□ 0.12
HMGN1-216ENST00000486741 SETD1BQ9UPS6 1966 aaKnown RBP15.78■□□□□ 0.12
HMGN1-216ENST00000486741 RTL1A6NKG5 1358 aa15.78■□□□□ 0.12
HMGN1-216ENST00000486741 IFIT1P09914 478 aaKnown RBP15.78■□□□□ 0.12
HMGN1-216ENST00000486741 CPLX2Q6PUV4 134 aaKnown RBP15.78■□□□□ 0.12
HMGN1-216ENST00000486741 CREBRFQ8IUR6 639 aa15.78■□□□□ 0.12
HMGN1-216ENST00000486741 MBD3O95983 291 aa15.78■□□□□ 0.12
HMGN1-216ENST00000486741 ATP2B1P20020 1258 aa15.78■□□□□ 0.12
HMGN1-216ENST00000486741 ZNF496Q96IT1 587 aaPredicted RBP15.78■□□□□ 0.12
HMGN1-216ENST00000486741 ARHGEF10O15013 1369 aa15.77■□□□□ 0.12
HMGN1-216ENST00000486741 CHMLP26374 656 aa15.77■□□□□ 0.12
HMGN1-216ENST00000486741 CHMP4CQ96CF2 233 aa15.77■□□□□ 0.12
HMGN1-216ENST00000486741 RBM27Q9P2N5 1060 aaKnown RBP15.77■□□□□ 0.12
HMGN1-216ENST00000486741 BECN2A8MW95 431 aa15.77■□□□□ 0.12
HMGN1-216ENST00000486741 GOLGA6L6A8MZA4 724 aa15.77■□□□□ 0.12
HMGN1-216ENST00000486741 NECAB1Q8N987 351 aa15.77■□□□□ 0.12
HMGN1-216ENST00000486741 MEX3CQ5U5Q3 659 aaKnown RBP15.77■□□□□ 0.11
HMGN1-216ENST00000486741 DDX21Q9NR30 783 aaKnown RBP eCLIP15.77■□□□□ 0.11
HMGN1-216ENST00000486741 TRMT112Q9UI30 125 aaKnown RBP15.77■□□□□ 0.11
HMGN1-216ENST00000486741 TBC1D2BQ9UPU7 963 aa15.77■□□□□ 0.11
HMGN1-216ENST00000486741 NDUFB9Q9Y6M9 179 aa15.77■□□□□ 0.11
HMGN1-216ENST00000486741 IGSF1Q8N6C5 1336 aa15.76■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms