RNA–Protein interactions for RNA: ENST00000484855.2

CTSA-207, Transcript of cathepsin A, humanhuman

TSL 1 (best)

Gene CTSA, Length 2,183 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTSA-207ENST00000484855 SRCIN1Q9C0H9 1055 aa20.91■□□□□ 0.94
CTSA-207ENST00000484855 DDX21Q9NR30 783 aaKnown RBP eCLIP20.91■□□□□ 0.94
CTSA-207ENST00000484855 ADAMTS2O95450 1211 aa20.9■□□□□ 0.94
CTSA-207ENST00000484855 SNRPA1P09661 255 aaKnown RBP20.9■□□□□ 0.94
CTSA-207ENST00000484855 DCTPP1Q9H773 170 aa20.9■□□□□ 0.94
CTSA-207ENST00000484855 NWD2Q9ULI1 1742 aa20.89■□□□□ 0.93
CTSA-207ENST00000484855 NPM2Q86SE8 214 aaKnown RBP20.89■□□□□ 0.93
CTSA-207ENST00000484855 ITGB4P16144 1822 aa20.88■□□□□ 0.93
CTSA-207ENST00000484855 UBAP1LF5GYI3 381 aa20.88■□□□□ 0.93
CTSA-207ENST00000484855 HMMRO75330 724 aa20.88■□□□□ 0.93
CTSA-207ENST00000484855 PDIA6Q15084 440 aa20.87■□□□□ 0.93
CTSA-207ENST00000484855 BEND3Q5T5X7 828 aa20.87■□□□□ 0.93
CTSA-207ENST00000484855 USP44Q9H0E7 712 aa20.87■□□□□ 0.93
CTSA-207ENST00000484855 KCPQ6ZWJ8 1503 aa20.87■□□□□ 0.93
CTSA-207ENST00000484855 UBTFL1P0CB47 393 aaPredicted RBP20.86■□□□□ 0.93
CTSA-207ENST00000484855 KSR2Q6VAB6 950 aa20.86■□□□□ 0.93
CTSA-207ENST00000484855 DDX58O95786 925 aaKnown RBP20.86■□□□□ 0.93
CTSA-207ENST00000484855 MAP3K2Q9Y2U5 619 aa20.86■□□□□ 0.93
CTSA-207ENST00000484855 NUTM2BA6NNL0 878 aaPredicted RBP20.85■□□□□ 0.93
CTSA-207ENST00000484855 NUTM2EB1AL46 878 aaPredicted RBP20.85■□□□□ 0.93
CTSA-207ENST00000484855 NUTM2AQ8IVF1 878 aaPredicted RBP20.85■□□□□ 0.93
CTSA-207ENST00000484855 USP16Q9Y5T5 823 aa20.85■□□□□ 0.93
CTSA-207ENST00000484855 LRRFIP2Q9Y608 721 aaKnown RBP20.85■□□□□ 0.93
CTSA-207ENST00000484855 MYL6BP14649 208 aa20.84■□□□□ 0.93
CTSA-207ENST00000484855 LRP6O75581 1613 aa20.84■□□□□ 0.93
CTSA-207ENST00000484855 AIMP1Q12904 312 aaKnown RBP20.83■□□□□ 0.93
CTSA-207ENST00000484855 ZBTB47Q9UFB7 747 aaPredicted RBP20.83■□□□□ 0.93
CTSA-207ENST00000484855 TNS2Q63HR2 1409 aa20.83■□□□□ 0.93
CTSA-207ENST00000484855 TMOD3Q9NYL9 352 aa20.83■□□□□ 0.92
CTSA-207ENST00000484855 ARFGEF2Q9Y6D5 1785 aa20.82■□□□□ 0.92
CTSA-207ENST00000484855 ALDH1L1O75891 902 aa20.81■□□□□ 0.92
CTSA-207ENST00000484855 ATP8B2P98198 1209 aa20.81■□□□□ 0.92
CTSA-207ENST00000484855 KAT6BQ8WYB5 2073 aa20.81■□□□□ 0.92
CTSA-207ENST00000484855 XAGE3Q8WTP9 111 aa20.8■□□□□ 0.92
CTSA-207ENST00000484855 AFDNP55196 1824 aaKnown RBP20.8■□□□□ 0.92
CTSA-207ENST00000484855 SLIT2O94813 1529 aa20.8■□□□□ 0.92
CTSA-207ENST00000484855 EXOC5O00471 708 aa20.8■□□□□ 0.92
CTSA-207ENST00000484855 SPATA31A1Q5TZJ5 1347 aa20.8■□□□□ 0.92
CTSA-207ENST00000484855 DOT1LQ8TEK3 1739 aa20.79■□□□□ 0.92
CTSA-207ENST00000484855 PNMA6EA0A0J9YXQ4 647 aa20.79■□□□□ 0.92
CTSA-207ENST00000484855 RIC3Q7Z5B4 369 aa20.79■□□□□ 0.92
CTSA-207ENST00000484855 NBPF7P0C2Y1 421 aaPredicted RBP20.79■□□□□ 0.92
CTSA-207ENST00000484855 COPS6Q7L5N1 327 aa20.79■□□□□ 0.92
CTSA-207ENST00000484855 LRP10Q7Z4F1 713 aa20.79■□□□□ 0.92
CTSA-207ENST00000484855 CDCA7Q9BWT1 371 aaPredicted RBP20.79■□□□□ 0.92
CTSA-207ENST00000484855 THRAP3Q9Y2W1 955 aaKnown RBP20.79■□□□□ 0.92
CTSA-207ENST00000484855 ERBB4Q15303 1308 aa20.79■□□□□ 0.92
CTSA-207ENST00000484855 APBB1O00213 710 aa20.78■□□□□ 0.92
CTSA-207ENST00000484855 PIP4K2AP48426 406 aaPredicted RBP20.78■□□□□ 0.92
CTSA-207ENST00000484855 LINS1Q8NG48 757 aa20.78■□□□□ 0.92
CTSA-207ENST00000484855 IPO9Q96P70 1041 aaKnown RBP20.78■□□□□ 0.92
CTSA-207ENST00000484855 MSH5O43196 834 aa20.78■□□□□ 0.92
CTSA-207ENST00000484855 PTCD1O75127 700 aaKnown RBP20.78■□□□□ 0.92
CTSA-207ENST00000484855 CWF19L2Q2TBE0 894 aaKnown RBP20.77■□□□□ 0.92
CTSA-207ENST00000484855 C9orf78Q9NZ63 289 aaPredicted RBP20.77■□□□□ 0.92
CTSA-207ENST00000484855 JCADQ9P266 1359 aa20.76■□□□□ 0.91
CTSA-207ENST00000484855 SEC24BO95487 1268 aa20.76■□□□□ 0.91
CTSA-207ENST00000484855 BMP2KLQ5H9B9 411 aa20.76■□□□□ 0.91
CTSA-207ENST00000484855 PIGBQ92521 554 aa20.76■□□□□ 0.91
CTSA-207ENST00000484855 SMARCA5O60264 1052 aaPredicted RBP20.75■□□□□ 0.91
CTSA-207ENST00000484855 NEXNQ0ZGT2 675 aa20.75■□□□□ 0.91
CTSA-207ENST00000484855 BCL11AQ9H165 835 aa20.75■□□□□ 0.91
CTSA-207ENST00000484855 EXOC6BQ9Y2D4 811 aa20.75■□□□□ 0.91
CTSA-207ENST00000484855 NUP188Q5SRE5 1749 aa20.75■□□□□ 0.91
CTSA-207ENST00000484855 SPATA31A5Q5VU36 1347 aa20.75■□□□□ 0.91
CTSA-207ENST00000484855 SPATA31A7Q8IWB4 1347 aa20.75■□□□□ 0.91
CTSA-207ENST00000484855 ANKRD13DQ6ZTN6 518 aa20.75■□□□□ 0.91
CTSA-207ENST00000484855 PPP1R42Q7Z4L9 355 aa20.74■□□□□ 0.91
CTSA-207ENST00000484855 PLEKHM2Q8IWE5 1019 aa20.74■□□□□ 0.91
CTSA-207ENST00000484855 SSH3Q8TE77 659 aa20.74■□□□□ 0.91
CTSA-207ENST00000484855 METTL22Q9BUU2 404 aaPredicted RBP20.74■□□□□ 0.91
CTSA-207ENST00000484855 HDAC5Q9UQL6 1122 aa20.73■□□□□ 0.91
CTSA-207ENST00000484855 CCDC9Q9Y3X0 531 aaKnown RBP20.73■□□□□ 0.91
CTSA-207ENST00000484855 BCL9O00512 1426 aa20.73■□□□□ 0.91
CTSA-207ENST00000484855 IBTKQ9P2D0 1353 aaPredicted RBP20.73■□□□□ 0.91
CTSA-207ENST00000484855 C16orf71Q8IYS4 520 aaPredicted RBP20.73■□□□□ 0.91
CTSA-207ENST00000484855 MYD88Q99836 296 aa20.73■□□□□ 0.91
CTSA-207ENST00000484855 ASAP1Q9ULH1 1129 aa20.73■□□□□ 0.91
CTSA-207ENST00000484855 NBPF26B4DH59 902 aa20.72■□□□□ 0.91
CTSA-207ENST00000484855 GRM8O00222 908 aa20.72■□□□□ 0.91
CTSA-207ENST00000484855 IGKV5-2P06315 115 aa20.72■□□□□ 0.91
CTSA-207ENST00000484855 POLA2Q14181 598 aa20.72■□□□□ 0.91
CTSA-207ENST00000484855 DDB1Q16531 1140 aa20.72■□□□□ 0.91
CTSA-207ENST00000484855 NBPF14Q5TI25 921 aa20.72■□□□□ 0.91
CTSA-207ENST00000484855 NBPF10Q6P3W6 841 aaKnown RBP20.72■□□□□ 0.91
CTSA-207ENST00000484855 NBPF15Q8N660 670 aa20.72■□□□□ 0.91
CTSA-207ENST00000484855 SRGAP3O43295 1099 aa20.72■□□□□ 0.91
CTSA-207ENST00000484855 UPF2Q9HAU5 1272 aaKnown RBP20.72■□□□□ 0.91
CTSA-207ENST00000484855 ATG3Q9NT62 314 aa20.72■□□□□ 0.91
CTSA-207ENST00000484855 UTYO14607 1347 aa20.71■□□□□ 0.91
CTSA-207ENST00000484855 AEBP2Q6ZN18 517 aaPredicted RBP20.71■□□□□ 0.91
CTSA-207ENST00000484855 LRRCC1Q9C099 1032 aa20.71■□□□□ 0.91
CTSA-207ENST00000484855 NEURL1BA8MQ27 555 aa20.7■□□□□ 0.91
CTSA-207ENST00000484855 DDRGK1Q96HY6 314 aa20.7■□□□□ 0.91
CTSA-207ENST00000484855 A1BGP04217 495 aa20.7■□□□□ 0.9
CTSA-207ENST00000484855 VSIG10Q8N0Z9 540 aa20.7■□□□□ 0.9
CTSA-207ENST00000484855 PLBD2Q8NHP8 589 aa20.7■□□□□ 0.9
CTSA-207ENST00000484855 OTUD7AQ8TE49 926 aaPredicted RBP20.7■□□□□ 0.9
CTSA-207ENST00000484855 TNKS1BP1Q9C0C2 1729 aaKnown RBP20.7■□□□□ 0.9
CTSA-207ENST00000484855 BARGINQ6ZT62 677 aa20.69■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms