RNA–Protein interactions for RNA: ENST00000481335.5

SQSTM1-207, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 562 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-207ENST00000481335 CNGB1Q14028 1251 aaPredicted RBP16.22■□□□□ 0.19
SQSTM1-207ENST00000481335 IL17REQ8NFR9 667 aa16.22■□□□□ 0.19
SQSTM1-207ENST00000481335 NARFQ9UHQ1 456 aa16.22■□□□□ 0.19
SQSTM1-207ENST00000481335 C1QTNF8P60827 252 aa16.21■□□□□ 0.19
SQSTM1-207ENST00000481335 FKBP8Q14318 412 aa16.21■□□□□ 0.19
SQSTM1-207ENST00000481335 SRP68Q9UHB9 627 aaKnown RBP16.21■□□□□ 0.19
SQSTM1-207ENST00000481335 ZBTB1Q9Y2K1 713 aa16.21■□□□□ 0.19
SQSTM1-207ENST00000481335 DLEC1Q9Y238 1755 aa16.21■□□□□ 0.18
SQSTM1-207ENST00000481335 A0A087WZG4 1122 aa16.2■□□□□ 0.18
SQSTM1-207ENST00000481335 U2AF1L5P0DN76 240 aaPredicted RBP16.2■□□□□ 0.18
SQSTM1-207ENST00000481335 TM4SF1P30408 202 aa16.2■□□□□ 0.18
SQSTM1-207ENST00000481335 U2AF1Q01081 240 aaKnown RBP eCLIP16.2■□□□□ 0.183e-6■□□□□ 8.7
SQSTM1-207ENST00000481335 FMNL2Q96PY5 1086 aa16.2■□□□□ 0.18
SQSTM1-207ENST00000481335 POLRMTO00411 1230 aaKnown RBP16.19■□□□□ 0.18
SQSTM1-207ENST00000481335 HTATSF1O43719 755 aaKnown RBP16.19■□□□□ 0.18
SQSTM1-207ENST00000481335 DDR1Q08345 913 aa16.19■□□□□ 0.18
SQSTM1-207ENST00000481335 USPL1Q5W0Q7 1092 aa16.19■□□□□ 0.18
SQSTM1-207ENST00000481335 PHACTR3Q96KR7 559 aa16.19■□□□□ 0.18
SQSTM1-207ENST00000481335 DLG5Q8TDM6 1919 aa16.18■□□□□ 0.18
SQSTM1-207ENST00000481335 EIF5P55010 431 aaKnown RBP16.18■□□□□ 0.18
SQSTM1-207ENST00000481335 RTF1Q92541 710 aaKnown RBP16.18■□□□□ 0.18
SQSTM1-207ENST00000481335 ZNF496Q96IT1 587 aaPredicted RBP16.18■□□□□ 0.18
SQSTM1-207ENST00000481335 BCORQ6W2J9 1755 aa16.18■□□□□ 0.18
SQSTM1-207ENST00000481335 A0A0G2JLW4 131 aa16.17■□□□□ 0.18
SQSTM1-207ENST00000481335 DPEP1P16444 411 aa16.17■□□□□ 0.18
SQSTM1-207ENST00000481335 IL6STP40189 918 aaPredicted RBP16.17■□□□□ 0.18
SQSTM1-207ENST00000481335 PIM2Q9P1W9 311 aa16.17■□□□□ 0.18
SQSTM1-207ENST00000481335 BCS1LQ9Y276 419 aa16.17■□□□□ 0.18
SQSTM1-207ENST00000481335 BTBD11A6QL63 1104 aa16.16■□□□□ 0.18
SQSTM1-207ENST00000481335 NEFMP07197 916 aa16.16■□□□□ 0.18
SQSTM1-207ENST00000481335 GPBP1L1Q9HC44 474 aaPredicted RBP16.16■□□□□ 0.18
SQSTM1-207ENST00000481335 LAMB4A4D0S4 1761 aa16.15■□□□□ 0.18
SQSTM1-207ENST00000481335 KCNA3P22001 575 aa16.15■□□□□ 0.18
SQSTM1-207ENST00000481335 CANXP27824 592 aaKnown RBP16.15■□□□□ 0.18
SQSTM1-207ENST00000481335 NFIXQ14938 502 aa16.15■□□□□ 0.18
SQSTM1-207ENST00000481335 NPM2Q86SE8 214 aaKnown RBP16.14■□□□□ 0.17
SQSTM1-207ENST00000481335 PNNQ9H307 717 aaKnown RBP16.14■□□□□ 0.17
SQSTM1-207ENST00000481335 BCL2L12Q9HB09 334 aa16.14■□□□□ 0.17
SQSTM1-207ENST00000481335 WWC3Q9ULE0 1092 aa16.14■□□□□ 0.17
SQSTM1-207ENST00000481335 DALRD3Q5D0E6 543 aaKnown RBP16.13■□□□□ 0.17
SQSTM1-207ENST00000481335 PDZRN3Q9UPQ7 1066 aa16.13■□□□□ 0.17
SQSTM1-207ENST00000481335 SBF1O95248 1867 aa16.13■□□□□ 0.17
SQSTM1-207ENST00000481335 KDM3BQ7LBC6 1761 aa16.13■□□□□ 0.17
SQSTM1-207ENST00000481335 RGL2O15211 777 aa16.12■□□□□ 0.17
SQSTM1-207ENST00000481335 CARMIL3Q8ND23 1372 aa16.12■□□□□ 0.17
SQSTM1-207ENST00000481335 SERPINB2P05120 415 aa16.11■□□□□ 0.17
SQSTM1-207ENST00000481335 SNRPA1P09661 255 aaKnown RBP16.11■□□□□ 0.17
SQSTM1-207ENST00000481335 RALBP1Q15311 655 aa16.11■□□□□ 0.17
SQSTM1-207ENST00000481335 ANKRD31Q8N7Z5 1873 aa16.11■□□□□ 0.17
SQSTM1-207ENST00000481335 SENP3-EIF4A1A0A087X0R7 540 aa16.1■□□□□ 0.17
SQSTM1-207ENST00000481335 ARHGAP27Q6ZUM4 889 aa16.1■□□□□ 0.17
SQSTM1-207ENST00000481335 MCM10Q7L590 875 aa16.1■□□□□ 0.17
SQSTM1-207ENST00000481335 PNISRQ8TF01 805 aaKnown RBP16.1■□□□□ 0.17
SQSTM1-207ENST00000481335 TAF7Q15545 349 aaPredicted RBP16.09■□□□□ 0.17
SQSTM1-207ENST00000481335 CHRNA5P30532 468 aa16.08■□□□□ 0.16
SQSTM1-207ENST00000481335 CLEC4GQ6UXB4 293 aa16.08■□□□□ 0.16
SQSTM1-207ENST00000481335 PLEKHF1Q96S99 279 aa16.08■□□□□ 0.16
SQSTM1-207ENST00000481335 ZC3H4Q9UPT8 1303 aaKnown RBP16.08■□□□□ 0.16
SQSTM1-207ENST00000481335 ARFGEF2Q9Y6D5 1785 aa16.08■□□□□ 0.16
SQSTM1-207ENST00000481335 KCNQ3O43525 872 aa16.07■□□□□ 0.16
SQSTM1-207ENST00000481335 CAMTA2O94983 1202 aa16.07■□□□□ 0.16
SQSTM1-207ENST00000481335 A1BGP04217 495 aa16.07■□□□□ 0.16
SQSTM1-207ENST00000481335 IFFO2Q5TF58 517 aa16.07■□□□□ 0.16
SQSTM1-207ENST00000481335 ZNF652Q9Y2D9 606 aa16.07■□□□□ 0.16
SQSTM1-207ENST00000481335 MAPK8IP3Q9UPT6 1336 aa16.07■□□□□ 0.16
SQSTM1-207ENST00000481335 TNRC6CQ9HCJ0 1690 aaKnown RBP16.07■□□□□ 0.16
SQSTM1-207ENST00000481335 CEP350Q5VT06 3117 aa16.06■□□□□ 0.16
SQSTM1-207ENST00000481335 COL11A2P13942 1736 aaPredicted RBP16.06■□□□□ 0.16
SQSTM1-207ENST00000481335 H0YIN7 160 aa16.06■□□□□ 0.16
SQSTM1-207ENST00000481335 PDE6BP35913 854 aa16.06■□□□□ 0.16
SQSTM1-207ENST00000481335 NFE2L2Q16236 605 aa16.06■□□□□ 0.16
SQSTM1-207ENST00000481335 TBC1D9BQ66K14 1250 aa16.06■□□□□ 0.16
SQSTM1-207ENST00000481335 DZIP3Q86Y13 1208 aaKnown RBP16.06■□□□□ 0.16
SQSTM1-207ENST00000481335 BRIP1Q9BX63 1249 aa16.06■□□□□ 0.16
SQSTM1-207ENST00000481335 TBC1D2BQ9UPU7 963 aa16.06■□□□□ 0.16
SQSTM1-207ENST00000481335 ZNF330Q9Y3S2 320 aaPredicted RBP16.06■□□□□ 0.16
SQSTM1-207ENST00000481335 USP16Q9Y5T5 823 aa16.06■□□□□ 0.16
SQSTM1-207ENST00000481335 DCTN1Q14203 1278 aa16.05■□□□□ 0.16
SQSTM1-207ENST00000481335 TTLL6Q8N841 843 aa16.05■□□□□ 0.16
SQSTM1-207ENST00000481335 ZNF526Q8TF50 670 aaPredicted RBP16.05■□□□□ 0.16
SQSTM1-207ENST00000481335 SETDB2Q96T68 719 aa16.05■□□□□ 0.16
SQSTM1-207ENST00000481335 KIF3CO14782 793 aa16.04■□□□□ 0.16
SQSTM1-207ENST00000481335 C9orf131Q5VYM1 1079 aa16.04■□□□□ 0.16
SQSTM1-207ENST00000481335 BICDL1Q6ZP65 573 aa16.04■□□□□ 0.16
SQSTM1-207ENST00000481335 DICER1Q9UPY3 1922 aaKnown RBP16.04■□□□□ 0.16
SQSTM1-207ENST00000481335 FER1L6Q2WGJ9 1857 aa16.03■□□□□ 0.16
SQSTM1-207ENST00000481335 CCDC88AQ3V6T2 1871 aa16.03■□□□□ 0.16
SQSTM1-207ENST00000481335 ST5P78524 1137 aa16.03■□□□□ 0.16
SQSTM1-207ENST00000481335 PRR5LQ6MZQ0 368 aa16.03■□□□□ 0.16
SQSTM1-207ENST00000481335 C2CD5Q86YS7 1000 aa16.03■□□□□ 0.16
SQSTM1-207ENST00000481335 CNBD1Q8NA66 436 aa16.03■□□□□ 0.16
SQSTM1-207ENST00000481335 TIAM2Q8IVF5 1701 aa16.02■□□□□ 0.16
SQSTM1-207ENST00000481335 KDM2BQ8NHM5 1336 aa16.02■□□□□ 0.16
SQSTM1-207ENST00000481335 MYBBP1AQ9BQG0 1328 aaKnown RBP16.02■□□□□ 0.16
SQSTM1-207ENST00000481335 CACNA1SQ13698 1873 aa16.01■□□□□ 0.15
SQSTM1-207ENST00000481335 NUP98P52948 1817 aa16.01■□□□□ 0.15
SQSTM1-207ENST00000481335 PRAMEF22A3QJZ6 481 aa16.01■□□□□ 0.15
SQSTM1-207ENST00000481335 TOMM70O94826 608 aa16.01■□□□□ 0.15
SQSTM1-207ENST00000481335 LMOD3Q0VAK6 560 aa16.01■□□□□ 0.15
SQSTM1-207ENST00000481335 BABAM1Q9NWV8 329 aa16.01■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms