RNA–Protein interactions for RNA: ENST00000479532.1

SF3B1-209, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 587 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-209ENST00000479532 TRPM1Q7Z4N2 1603 aa8.72□□□□□ -1.01
SF3B1-209ENST00000479532 KNDC1Q76NI1 1749 aa8.71□□□□□ -1.01
SF3B1-209ENST00000479532 NKTRP30414 1462 aaKnown RBP8.71□□□□□ -1.01
SF3B1-209ENST00000479532 KCNA6P17658 529 aa8.71□□□□□ -1.02
SF3B1-209ENST00000479532 MSS51Q4VC12 460 aa8.71□□□□□ -1.02
SF3B1-209ENST00000479532 TRIM46Q7Z4K8 759 aa8.71□□□□□ -1.02
SF3B1-209ENST00000479532 ROCK2O75116 1388 aaKnown RBP8.71□□□□□ -1.02
SF3B1-209ENST00000479532 RASSF7Q02833 373 aa8.7□□□□□ -1.02
SF3B1-209ENST00000479532 RSPH6AQ9H0K4 717 aa8.7□□□□□ -1.02
SF3B1-209ENST00000479532 AMOTL2Q9Y2J4 779 aa8.7□□□□□ -1.02
SF3B1-209ENST00000479532 XRN1Q8IZH2 1706 aaKnown RBP8.7□□□□□ -1.02
SF3B1-209ENST00000479532 ZNF335Q9H4Z2 1342 aaPredicted RBP8.7□□□□□ -1.02
SF3B1-209ENST00000479532 METP08581 1390 aa8.7□□□□□ -1.02
SF3B1-209ENST00000479532 RALGAPBQ86X10 1494 aa8.7□□□□□ -1.02
SF3B1-209ENST00000479532 CCDC24Q8N4L8 307 aa8.69□□□□□ -1.02
SF3B1-209ENST00000479532 WASF2Q9Y6W5 498 aa8.69□□□□□ -1.02
SF3B1-209ENST00000479532 LRPPRCP42704 1394 aaKnown RBP8.69□□□□□ -1.02
SF3B1-209ENST00000479532 EIF3AQ14152 1382 aaKnown RBP8.69□□□□□ -1.02
SF3B1-209ENST00000479532 YTHDC2Q9H6S0 1430 aaKnown RBP8.69□□□□□ -1.02
SF3B1-209ENST00000479532 STRCP1A6NGW2 1772 aa8.68□□□□□ -1.02
SF3B1-209ENST00000479532 GSK3AP49840 483 aa8.68□□□□□ -1.02
SF3B1-209ENST00000479532 SKIV2LQ15477 1246 aaKnown RBP8.68□□□□□ -1.02
SF3B1-209ENST00000479532 TMEM132EQ6IEE7 984 aa8.68□□□□□ -1.02
SF3B1-209ENST00000479532 PROSER2Q86WR7 435 aaPredicted RBP8.68□□□□□ -1.02
SF3B1-209ENST00000479532 STK26Q9P289 416 aa8.68□□□□□ -1.02
SF3B1-209ENST00000479532 PTCH1Q13635 1447 aa8.68□□□□□ -1.02
SF3B1-209ENST00000479532 ASXL1Q8IXJ9 1541 aa8.68□□□□□ -1.02
SF3B1-209ENST00000479532 ADGRB1O14514 1584 aa8.68□□□□□ -1.02
SF3B1-209ENST00000479532 DDX11L8A8MPP1 907 aa8.67□□□□□ -1.02
SF3B1-209ENST00000479532 GRIPAP1Q4V328 841 aa8.67□□□□□ -1.02
SF3B1-209ENST00000479532 LTBP4Q8N2S1 1624 aa8.67□□□□□ -1.02
SF3B1-209ENST00000479532 PTPRUQ92729 1446 aa8.67□□□□□ -1.02
SF3B1-209ENST00000479532 ABCC11Q96J66 1382 aa8.67□□□□□ -1.02
SF3B1-209ENST00000479532 DLC1Q96QB1 1528 aa8.67□□□□□ -1.02
SF3B1-209ENST00000479532 CARD11Q9BXL7 1154 aa8.67□□□□□ -1.02
SF3B1-209ENST00000479532 ZMYND15Q9H091 742 aa8.67□□□□□ -1.02
SF3B1-209ENST00000479532 POGKQ9P215 609 aa8.67□□□□□ -1.02
SF3B1-209ENST00000479532 IQSEC2Q5JU85 1478 aa8.66□□□□□ -1.02
SF3B1-209ENST00000479532 TECPR2O15040 1411 aa8.66□□□□□ -1.02
SF3B1-209ENST00000479532 NCOA3Q9Y6Q9 1424 aa8.66□□□□□ -1.02
SF3B1-209ENST00000479532 WNT7BP56706 349 aa8.66□□□□□ -1.02
SF3B1-209ENST00000479532 NBPF8Q3BBV2 869 aa8.66□□□□□ -1.02
SF3B1-209ENST00000479532 RNF19BQ6ZMZ0 732 aa8.66□□□□□ -1.02
SF3B1-209ENST00000479532 SIRT1Q96EB6 747 aa8.66□□□□□ -1.02
SF3B1-209ENST00000479532 ZFP42Q96MM3 310 aa8.66□□□□□ -1.02
SF3B1-209ENST00000479532 POLR3EQ9NVU0 708 aa8.66□□□□□ -1.02
SF3B1-209ENST00000479532 TRAK1Q9UPV9 953 aa8.66□□□□□ -1.02
SF3B1-209ENST00000479532 ARHGEF28Q8N1W1 1705 aaKnown RBP8.66□□□□□ -1.02
SF3B1-209ENST00000479532 LRRC7Q96NW7 1537 aa8.65□□□□□ -1.02
SF3B1-209ENST00000479532 FAM135BQ49AJ0 1406 aa8.65□□□□□ -1.02
SF3B1-209ENST00000479532 GPRASP1Q5JY77 1395 aa8.65□□□□□ -1.02
SF3B1-209ENST00000479532 RNF225M0QZC1 329 aaPredicted RBP8.65□□□□□ -1.02
SF3B1-209ENST00000479532 FLIIQ13045 1269 aa8.65□□□□□ -1.02
SF3B1-209ENST00000479532 NBPF1Q3BBV0 1214 aa8.65□□□□□ -1.02
SF3B1-209ENST00000479532 MYSM1Q5VVJ2 828 aa8.65□□□□□ -1.02
SF3B1-209ENST00000479532 MSH6P52701 1360 aa8.64□□□□□ -1.03
SF3B1-209ENST00000479532 TMEM94Q12767 1356 aa8.64□□□□□ -1.03
SF3B1-209ENST00000479532 GCGRP47871 477 aa8.64□□□□□ -1.03
SF3B1-209ENST00000479532 Q3C1V9 767 aa8.64□□□□□ -1.03
SF3B1-209ENST00000479532 PROCA1Q8NCQ7 364 aaPredicted RBP8.64□□□□□ -1.03
SF3B1-209ENST00000479532 TBC1D2Q9BYX2 928 aa8.64□□□□□ -1.03
SF3B1-209ENST00000479532 ROBO2Q9HCK4 1378 aa8.63□□□□□ -1.03
SF3B1-209ENST00000479532 QRICH2Q9H0J4 1663 aa8.63□□□□□ -1.03
SF3B1-209ENST00000479532 MMP16P51512 607 aa8.63□□□□□ -1.03
SF3B1-209ENST00000479532 SKOR1P84550 965 aa8.63□□□□□ -1.03
SF3B1-209ENST00000479532 GPAT2Q6NUI2 795 aa8.63□□□□□ -1.03
SF3B1-209ENST00000479532 PRAM1Q96QH2 718 aa8.63□□□□□ -1.03
SF3B1-209ENST00000479532 XIRP1Q702N8 1843 aaKnown RBP8.63□□□□□ -1.03
SF3B1-209ENST00000479532 CENPJQ9HC77 1338 aaPredicted RBP8.62□□□□□ -1.03
SF3B1-209ENST00000479532 CD46P15529 392 aa8.62□□□□□ -1.03
SF3B1-209ENST00000479532 ATF3P18847 181 aa8.62□□□□□ -1.03
SF3B1-209ENST00000479532 CLK2P49760 499 aaKnown RBP8.62□□□□□ -1.03
SF3B1-209ENST00000479532 SULF1Q8IWU6 871 aa8.62□□□□□ -1.03
SF3B1-209ENST00000479532 C19orf44Q9H6X5 657 aa8.62□□□□□ -1.03
SF3B1-209ENST00000479532 NALCNQ8IZF0 1738 aa8.62□□□□□ -1.03
SF3B1-209ENST00000479532 DCCP43146 1447 aa8.62□□□□□ -1.03
SF3B1-209ENST00000479532 ADGRL3Q9HAR2 1447 aa8.62□□□□□ -1.03
SF3B1-209ENST00000479532 SIPA1L2Q9P2F8 1722 aaPredicted RBP8.61□□□□□ -1.03
SF3B1-209ENST00000479532 VSIG8P0DPA2 414 aa8.61□□□□□ -1.03
SF3B1-209ENST00000479532 SAFB2Q14151 953 aaKnown RBP eCLIP8.61□□□□□ -1.03
SF3B1-209ENST00000479532 DIXDC1Q155Q3 683 aa8.61□□□□□ -1.03
SF3B1-209ENST00000479532 WAPLQ7Z5K2 1190 aa8.61□□□□□ -1.03
SF3B1-209ENST00000479532 EHBP1Q8NDI1 1231 aa8.61□□□□□ -1.03
SF3B1-209ENST00000479532 ADGRB2O60241 1585 aa8.61□□□□□ -1.03
SF3B1-209ENST00000479532 CDC42BPGQ6DT37 1551 aa8.61□□□□□ -1.03
SF3B1-209ENST00000479532 USP47Q96K76 1375 aa8.61□□□□□ -1.03
SF3B1-209ENST00000479532 TOM1O60784 492 aa8.6□□□□□ -1.03
SF3B1-209ENST00000479532 EIF4G2P78344 907 aaKnown RBP eCLIP8.6□□□□□ -1.03
SF3B1-209ENST00000479532 SCARF1Q14162 830 aa8.6□□□□□ -1.03
SF3B1-209ENST00000479532 XP32Q5T750 250 aa8.6□□□□□ -1.03
SF3B1-209ENST00000479532 SPIRE2Q8WWL2 714 aa8.6□□□□□ -1.03
SF3B1-209ENST00000479532 GNL3Q9BVP2 549 aaKnown RBP eCLIP8.6□□□□□ -1.03
SF3B1-209ENST00000479532 PLEKHH1Q9ULM0 1364 aa8.6□□□□□ -1.03
SF3B1-209ENST00000479532 IGHA1P01876 353 aa8.59□□□□□ -1.03
SF3B1-209ENST00000479532 ARXQ96QS3 562 aa8.59□□□□□ -1.03
SF3B1-209ENST00000479532 USB1Q9BQ65 265 aaKnown RBP8.59□□□□□ -1.03
SF3B1-209ENST00000479532 EVC2Q86UK5 1308 aa8.58□□□□□ -1.04
SF3B1-209ENST00000479532 FMN2Q9NZ56 1722 aa8.58□□□□□ -1.04
SF3B1-209ENST00000479532 UBAP1LF5GYI3 381 aa8.58□□□□□ -1.04
SF3B1-209ENST00000479532 MCM6Q14566 821 aa8.58□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 63.7 ms