RNA–Protein interactions for RNA: ENST00000478214.1

HMGA1-206, Transcript of high mobility group AT-hook 1, humanhuman

TSL 1 (best)

Gene HMGA1, Length 716 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-206ENST00000478214 NEUROD2Q15784 382 aa20.54■□□□□ 0.88
HMGA1-206ENST00000478214 SYT17Q9BSW7 474 aa20.54■□□□□ 0.88
HMGA1-206ENST00000478214 TEX13AQ9BXU3 409 aaPredicted RBP20.53■□□□□ 0.88
HMGA1-206ENST00000478214 SOS1Q07889 1333 aaPredicted RBP20.53■□□□□ 0.88
HMGA1-206ENST00000478214 KLHL34Q8N239 644 aa20.52■□□□□ 0.88
HMGA1-206ENST00000478214 SRP68Q9UHB9 627 aaKnown RBP20.52■□□□□ 0.88
HMGA1-206ENST00000478214 PRAMEF22A3QJZ6 481 aa20.51■□□□□ 0.87
HMGA1-206ENST00000478214 GYS1P13807 737 aa20.51■□□□□ 0.87
HMGA1-206ENST00000478214 CANXP27824 592 aaKnown RBP20.51■□□□□ 0.87
HMGA1-206ENST00000478214 LMOD3Q0VAK6 560 aa20.51■□□□□ 0.87
HMGA1-206ENST00000478214 PNISRQ8TF01 805 aaKnown RBP20.51■□□□□ 0.87
HMGA1-206ENST00000478214 MRS2Q9HD23 443 aa20.5■□□□□ 0.87
HMGA1-206ENST00000478214 USP16Q9Y5T5 823 aa20.5■□□□□ 0.87
HMGA1-206ENST00000478214 SNRPA1P09661 255 aaKnown RBP20.49■□□□□ 0.87
HMGA1-206ENST00000478214 NLGN1Q8N2Q7 840 aa20.49■□□□□ 0.87
HMGA1-206ENST00000478214 TRIM35Q9UPQ4 493 aa20.49■□□□□ 0.87
HMGA1-206ENST00000478214 USP42Q9H9J4 1324 aaKnown RBP20.49■□□□□ 0.87
HMGA1-206ENST00000478214 A1BGP04217 495 aa20.48■□□□□ 0.87
HMGA1-206ENST00000478214 MMP10P09238 476 aa20.48■□□□□ 0.87
HMGA1-206ENST00000478214 COL15A1P39059 1388 aa20.47■□□□□ 0.87
HMGA1-206ENST00000478214 APAF1O14727 1248 aa20.47■□□□□ 0.87
HMGA1-206ENST00000478214 EIF5P55010 431 aaKnown RBP20.46■□□□□ 0.87
HMGA1-206ENST00000478214 EIF4A1P60842 406 aaKnown RBP20.46■□□□□ 0.87
HMGA1-206ENST00000478214 FKBP8Q14318 412 aa20.46■□□□□ 0.87
HMGA1-206ENST00000478214 TSPYL4Q9UJ04 414 aa20.46■□□□□ 0.87
HMGA1-206ENST00000478214 C4AP0C0L4 1744 aa20.46■□□□□ 0.87
HMGA1-206ENST00000478214 ZPR1O75312 459 aa20.45■□□□□ 0.86
HMGA1-206ENST00000478214 USPL1Q5W0Q7 1092 aa20.45■□□□□ 0.86
HMGA1-206ENST00000478214 NLGN2Q8NFZ4 835 aa20.45■□□□□ 0.86
HMGA1-206ENST00000478214 ZNF330Q9Y3S2 320 aaPredicted RBP20.45■□□□□ 0.86
HMGA1-206ENST00000478214 IL6STP40189 918 aaPredicted RBP20.44■□□□□ 0.86
HMGA1-206ENST00000478214 PIP4K2AP48426 406 aaPredicted RBP20.44■□□□□ 0.86
HMGA1-206ENST00000478214 NARFQ9UHQ1 456 aa20.44■□□□□ 0.86
HMGA1-206ENST00000478214 GIGYF1O75420 1035 aaPredicted RBP20.43■□□□□ 0.86
HMGA1-206ENST00000478214 KDM3BQ7LBC6 1761 aa20.43■□□□□ 0.86
HMGA1-206ENST00000478214 A0A087WZG4 1122 aa20.42■□□□□ 0.86
HMGA1-206ENST00000478214 BCL2L12Q9HB09 334 aa20.42■□□□□ 0.86
HMGA1-206ENST00000478214 BABAM1Q9NWV8 329 aa20.42■□□□□ 0.86
HMGA1-206ENST00000478214 CD2APQ9Y5K6 639 aa20.42■□□□□ 0.86
HMGA1-206ENST00000478214 TBC1D2BQ9UPU7 963 aa20.41■□□□□ 0.86
HMGA1-206ENST00000478214 LAS1LQ9Y4W2 734 aaKnown RBP20.41■□□□□ 0.86
HMGA1-206ENST00000478214 SENP3-EIF4A1A0A087X0R7 540 aa20.4■□□□□ 0.86
HMGA1-206ENST00000478214 DCAF8L1A6NGE4 600 aa20.4■□□□□ 0.86
HMGA1-206ENST00000478214 NBPF26B4DH59 902 aa20.4■□□□□ 0.86
HMGA1-206ENST00000478214 CHL1O00533 1208 aa20.4■□□□□ 0.86
HMGA1-206ENST00000478214 DDR1Q08345 913 aa20.4■□□□□ 0.86
HMGA1-206ENST00000478214 NBPF10Q6P3W6 841 aaKnown RBP20.4■□□□□ 0.86
HMGA1-206ENST00000478214 NBPF15Q8N660 670 aa20.4■□□□□ 0.86
HMGA1-206ENST00000478214 PARP3Q9Y6F1 533 aa20.4■□□□□ 0.86
HMGA1-206ENST00000478214 TM4SF1P30408 202 aa20.39■□□□□ 0.85
HMGA1-206ENST00000478214 NPM2Q86SE8 214 aaKnown RBP20.39■□□□□ 0.85
HMGA1-206ENST00000478214 NFIXQ14938 502 aa20.37■□□□□ 0.85
HMGA1-206ENST00000478214 POLRMTO00411 1230 aaKnown RBP20.36■□□□□ 0.85
HMGA1-206ENST00000478214 CAMTA2O94983 1202 aa20.36■□□□□ 0.85
HMGA1-206ENST00000478214 DZIP3Q86Y13 1208 aaKnown RBP20.36■□□□□ 0.85
HMGA1-206ENST00000478214 KRT24Q2M2I5 525 aa20.35■□□□□ 0.85
HMGA1-206ENST00000478214 PELP1Q8IZL8 1130 aaKnown RBP20.35■□□□□ 0.85
HMGA1-206ENST00000478214 CFAP44Q96MT7 982 aa20.35■□□□□ 0.85
HMGA1-206ENST00000478214 UTRNP46939 3433 aa20.34■□□□□ 0.85
HMGA1-206ENST00000478214 GPR162Q16538 588 aa20.34■□□□□ 0.85
HMGA1-206ENST00000478214 BICDL1Q6ZP65 573 aa20.34■□□□□ 0.85
HMGA1-206ENST00000478214 FAM9BQ8IZU0 186 aa20.34■□□□□ 0.85
HMGA1-206ENST00000478214 C10orf71Q711Q0 1435 aa20.34■□□□□ 0.85
HMGA1-206ENST00000478214 ZNF853P0CG23 659 aa20.33■□□□□ 0.85
HMGA1-206ENST00000478214 EIF2S2P20042 333 aaKnown RBP20.33■□□□□ 0.85
HMGA1-206ENST00000478214 CALD1Q05682 793 aaKnown RBP20.33■□□□□ 0.85
HMGA1-206ENST00000478214 TBC1D9BQ66K14 1250 aa20.33■□□□□ 0.85
HMGA1-206ENST00000478214 NGEFQ8N5V2 710 aa20.33■□□□□ 0.85
HMGA1-206ENST00000478214 MBIPQ9NS73 344 aa20.33■□□□□ 0.85
HMGA1-206ENST00000478214 LAMB4A4D0S4 1761 aa20.33■□□□□ 0.84
HMGA1-206ENST00000478214 GOLGB1Q14789 3259 aaKnown RBP20.33■□□□□ 0.84
HMGA1-206ENST00000478214 MYL6BP14649 208 aa20.32■□□□□ 0.84
HMGA1-206ENST00000478214 IFT57Q9NWB7 429 aa20.32■□□□□ 0.84
HMGA1-206ENST00000478214 SERPINB2P05120 415 aa20.31■□□□□ 0.84
HMGA1-206ENST00000478214 WWC3Q9ULE0 1092 aa20.31■□□□□ 0.84
HMGA1-206ENST00000478214 YBX3P16989 372 aaKnown RBP eCLIP20.3■□□□□ 0.845e-37■■□□□ 14
HMGA1-206ENST00000478214 GNAI1P63096 354 aa20.3■□□□□ 0.84
HMGA1-206ENST00000478214 CCDC27Q2M243 656 aa20.3■□□□□ 0.84
HMGA1-206ENST00000478214 NECTIN2Q92692 538 aa20.3■□□□□ 0.84
HMGA1-206ENST00000478214 ERBB4Q15303 1308 aa20.29■□□□□ 0.84
HMGA1-206ENST00000478214 SCN7AQ01118 1682 aa20.29■□□□□ 0.84
HMGA1-206ENST00000478214 A0A0G2JLW4 131 aa20.29■□□□□ 0.84
HMGA1-206ENST00000478214 TGFB2P61812 414 aa20.29■□□□□ 0.84
HMGA1-206ENST00000478214 PDIA6Q15084 440 aa20.29■□□□□ 0.84
HMGA1-206ENST00000478214 WWC1Q8IX03 1113 aa20.29■□□□□ 0.84
HMGA1-206ENST00000478214 SALL2Q9Y467 1007 aaPredicted RBP20.29■□□□□ 0.84
HMGA1-206ENST00000478214 PXDNLA1KZ92 1463 aa20.29■□□□□ 0.84
HMGA1-206ENST00000478214 ANXA1P04083 346 aa20.28■□□□□ 0.84
HMGA1-206ENST00000478214 DPEP1P16444 411 aa20.28■□□□□ 0.84
HMGA1-206ENST00000478214 PROSER3Q2NL68 480 aa20.28■□□□□ 0.84
HMGA1-206ENST00000478214 TTLL7Q6ZT98 887 aa20.28■□□□□ 0.84
HMGA1-206ENST00000478214 HLFQ16534 295 aa20.27■□□□□ 0.84
HMGA1-206ENST00000478214 NCBP3Q53F19 620 aaKnown RBP20.27■□□□□ 0.84
HMGA1-206ENST00000478214 CLEC4GQ6UXB4 293 aa20.27■□□□□ 0.84
HMGA1-206ENST00000478214 LRP10Q7Z4F1 713 aa20.27■□□□□ 0.84
HMGA1-206ENST00000478214 SETDB2Q96T68 719 aa20.27■□□□□ 0.84
HMGA1-206ENST00000478214 ZNF652Q9Y2D9 606 aa20.27■□□□□ 0.84
HMGA1-206ENST00000478214 KIF13BQ9NQT8 1826 aa20.26■□□□□ 0.83
HMGA1-206ENST00000478214 DUSP27Q5VZP5 1158 aa20.26■□□□□ 0.83
HMGA1-206ENST00000478214 CARMIL3Q8ND23 1372 aa20.25■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 63.4 ms