RNA–Protein interactions for RNA: ENST00000478095.1

HDAC6-222, Transcript of histone deacetylase 6, human

TSL 4

Gene HDAC6, Length 620 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HDAC6-222	ENST00000478095	C5	P01031	1676 aa		13.47	□□□□□ -0.25
HDAC6-222	ENST00000478095	RPL17-C18orf32	A0A0A6YYL6	228 aa	Known RBP	13.47	□□□□□ -0.25
HDAC6-222	ENST00000478095	CRKL	P46109	303 aa	Known RBP	13.47	□□□□□ -0.25
HDAC6-222	ENST00000478095	COL23A1	Q86Y22	540 aa	Predicted RBP	13.47	□□□□□ -0.25
HDAC6-222	ENST00000478095	MIER1	Q8N108	512 aa		13.47	□□□□□ -0.25
HDAC6-222	ENST00000478095	C4B	P0C0L5	1744 aa		13.47	□□□□□ -0.25
HDAC6-222	ENST00000478095	CNTNAP4	Q9C0A0	1308 aa		13.46	□□□□□ -0.25
HDAC6-222	ENST00000478095	PRAMEF22	A3QJZ6	481 aa		13.46	□□□□□ -0.25
HDAC6-222	ENST00000478095	HMGB2	P26583	209 aa	Known RBP	13.46	□□□□□ -0.25
HDAC6-222	ENST00000478095	VSIG10	Q8N0Z9	540 aa		13.46	□□□□□ -0.25
HDAC6-222	ENST00000478095	TSPYL4	Q9UJ04	414 aa		13.46	□□□□□ -0.25
HDAC6-222	ENST00000478095	SALL2	Q9Y467	1007 aa	Predicted RBP	13.46	□□□□□ -0.25
HDAC6-222	ENST00000478095	LAS1L	Q9Y4W2	734 aa	Known RBP	13.46	□□□□□ -0.25
HDAC6-222	ENST00000478095	SRCAP	Q6ZRS2	3230 aa		13.46	□□□□□ -0.26
HDAC6-222	ENST00000478095	CCER2	I3L3R5	266 aa		13.45	□□□□□ -0.26
HDAC6-222	ENST00000478095	CYP19A1	P11511	503 aa	Predicted RBP	13.45	□□□□□ -0.26
HDAC6-222	ENST00000478095	INTS5	Q6P9B9	1019 aa	Known RBP	13.45	□□□□□ -0.26
HDAC6-222	ENST00000478095	POTEH	Q6S545	545 aa		13.45	□□□□□ -0.26
HDAC6-222	ENST00000478095	SSFA2	P28290	1259 aa		13.44	□□□□□ -0.26
HDAC6-222	ENST00000478095	RC3H1	Q5TC82	1133 aa	Known RBP	13.44	□□□□□ -0.26
HDAC6-222	ENST00000478095	MSL1	Q68DK7	614 aa		13.44	□□□□□ -0.26
HDAC6-222	ENST00000478095	SPON1	Q9HCB6	807 aa		13.44	□□□□□ -0.26
HDAC6-222	ENST00000478095	CCDC87	Q9NVE4	849 aa		13.44	□□□□□ -0.26
HDAC6-222	ENST00000478095	ZBTB1	Q9Y2K1	713 aa		13.44	□□□□□ -0.26
HDAC6-222	ENST00000478095	RTCB	Q9Y3I0	505 aa	Known RBP	13.44	□□□□□ -0.26
HDAC6-222	ENST00000478095	SIPA1L3	O60292	1781 aa	Predicted RBP	13.44	□□□□□ -0.26
HDAC6-222	ENST00000478095	RPS6KA4	O75676	772 aa		13.43	□□□□□ -0.26
HDAC6-222	ENST00000478095	STARD3NL	O95772	234 aa		13.43	□□□□□ -0.26
HDAC6-222	ENST00000478095	SNRPA1	P09661	255 aa	Known RBP	13.43	□□□□□ -0.26
HDAC6-222	ENST00000478095	CANX	P27824	592 aa	Known RBP	13.43	□□□□□ -0.26
HDAC6-222	ENST00000478095	EIF4A1	P60842	406 aa	Known RBP	13.43	□□□□□ -0.26
HDAC6-222	ENST00000478095	TJP1	Q07157	1748 aa		13.43	□□□□□ -0.26
HDAC6-222	ENST00000478095	FLAD1	Q8NFF5	587 aa		13.43	□□□□□ -0.26
HDAC6-222	ENST00000478095	MTFR1L	Q9H019	292 aa		13.43	□□□□□ -0.26
HDAC6-222	ENST00000478095	DLG5	Q8TDM6	1919 aa		13.43	□□□□□ -0.26
HDAC6-222	ENST00000478095	CASZ1	Q86V15	1759 aa		13.43	□□□□□ -0.26
HDAC6-222	ENST00000478095	PIP4K2A	P48426	406 aa	Predicted RBP	13.42	□□□□□ -0.26
HDAC6-222	ENST00000478095	ARHGEF1	Q92888	912 aa	Known RBP	13.42	□□□□□ -0.26
HDAC6-222	ENST00000478095	USP16	Q9Y5T5	823 aa		13.42	□□□□□ -0.26
HDAC6-222	ENST00000478095	UBR2	Q8IWV8	1755 aa		13.42	□□□□□ -0.26
HDAC6-222	ENST00000478095	VIRMA	Q69YN4	1812 aa	Known RBP	13.41	□□□□□ -0.26
HDAC6-222	ENST00000478095	TAF1L	Q8IZX4	1826 aa		13.41	□□□□□ -0.26
HDAC6-222	ENST00000478095	ZNF831	Q5JPB2	1677 aa		13.41	□□□□□ -0.26
HDAC6-222	ENST00000478095	A1BG	P04217	495 aa		13.41	□□□□□ -0.26
HDAC6-222	ENST00000478095	TRAPPC3L	Q5T215	181 aa		13.41	□□□□□ -0.26
HDAC6-222	ENST00000478095	TEX13A	Q9BXU3	409 aa	Predicted RBP	13.41	□□□□□ -0.26
HDAC6-222	ENST00000478095	ZNF330	Q9Y3S2	320 aa	Predicted RBP	13.41	□□□□□ -0.26
HDAC6-222	ENST00000478095	SOS1	Q07889	1333 aa	Predicted RBP	13.4	□□□□□ -0.26
HDAC6-222	ENST00000478095	CHL1	O00533	1208 aa		13.4	□□□□□ -0.26
HDAC6-222	ENST00000478095	PTGER2	P43116	358 aa		13.4	□□□□□ -0.26
HDAC6-222	ENST00000478095	KRT24	Q2M2I5	525 aa		13.4	□□□□□ -0.26
HDAC6-222	ENST00000478095	WWC1	Q8IX03	1113 aa		13.4	□□□□□ -0.26
HDAC6-222	ENST00000478095	SLC16A10	Q8TF71	515 aa		13.4	□□□□□ -0.26
HDAC6-222	ENST00000478095	BABAM1	Q9NWV8	329 aa		13.4	□□□□□ -0.26
HDAC6-222	ENST00000478095	TUBGCP6	Q96RT7	1819 aa		13.4	□□□□□ -0.26
HDAC6-222	ENST00000478095	CIC	Q96RK0	1608 aa	Predicted RBP	13.39	□□□□□ -0.27
HDAC6-222	ENST00000478095	COL5A3	P25940	1745 aa	Predicted RBP	13.39	□□□□□ -0.27
HDAC6-222	ENST00000478095	GIGYF1	O75420	1035 aa	Predicted RBP	13.39	□□□□□ -0.27
HDAC6-222	ENST00000478095	RFC4	P35249	363 aa		13.39	□□□□□ -0.27
HDAC6-222	ENST00000478095	CALD1	Q05682	793 aa	Known RBP	13.39	□□□□□ -0.27
HDAC6-222	ENST00000478095	CCDC27	Q2M243	656 aa		13.39	□□□□□ -0.27
HDAC6-222	ENST00000478095	CFAP44	Q96MT7	982 aa		13.39	□□□□□ -0.27
HDAC6-222	ENST00000478095	MBIP	Q9NS73	344 aa		13.39	□□□□□ -0.27
HDAC6-222	ENST00000478095	PPP1R1B	Q9UD71	204 aa	Predicted RBP	13.39	□□□□□ -0.27
HDAC6-222	ENST00000478095	SRP68	Q9UHB9	627 aa	Known RBP	13.39	□□□□□ -0.27
HDAC6-222	ENST00000478095	COL15A1	P39059	1388 aa		13.38	□□□□□ -0.27
HDAC6-222	ENST00000478095	SGIP1	Q9BQI5	828 aa		13.38	□□□□□ -0.27
HDAC6-222	ENST00000478095	IFT57	Q9NWB7	429 aa		13.38	□□□□□ -0.27
HDAC6-222	ENST00000478095	ZNF853	P0CG23	659 aa		13.37	□□□□□ -0.27
HDAC6-222	ENST00000478095	POLD1	P28340	1107 aa		13.37	□□□□□ -0.27
HDAC6-222	ENST00000478095	GNAI1	P63096	354 aa		13.37	□□□□□ -0.27
HDAC6-222	ENST00000478095	TSR2	Q969E8	191 aa	Known RBP	13.37	□□□□□ -0.27
HDAC6-222	ENST00000478095	LRP5	O75197	1615 aa		13.37	□□□□□ -0.27
HDAC6-222	ENST00000478095	UBR3	Q6ZT12	1888 aa		13.37	□□□□□ -0.27
HDAC6-222	ENST00000478095	KDM3B	Q7LBC6	1761 aa		13.37	□□□□□ -0.27
HDAC6-222	ENST00000478095	USP42	Q9H9J4	1324 aa	Known RBP	13.37	□□□□□ -0.27
HDAC6-222	ENST00000478095	NBPF26	B4DH59	902 aa		13.36	□□□□□ -0.27
HDAC6-222	ENST00000478095	GYS1	P13807	737 aa		13.36	□□□□□ -0.27
HDAC6-222	ENST00000478095	EIF2S2	P20042	333 aa	Known RBP	13.36	□□□□□ -0.27
HDAC6-222	ENST00000478095	EIF5	P55010	431 aa	Known RBP	13.36	□□□□□ -0.27
HDAC6-222	ENST00000478095	USPL1	Q5W0Q7	1092 aa		13.36	□□□□□ -0.27
HDAC6-222	ENST00000478095	NBPF10	Q6P3W6	841 aa	Known RBP	13.36	□□□□□ -0.27
HDAC6-222	ENST00000478095	NBPF15	Q8N660	670 aa		13.36	□□□□□ -0.27
HDAC6-222	ENST00000478095	NECTIN2	Q92692	538 aa		13.36	□□□□□ -0.27
HDAC6-222	ENST00000478095	ARX	Q96QS3	562 aa		13.36	□□□□□ -0.27
HDAC6-222	ENST00000478095	QSER1	Q2KHR3	1735 aa		13.36	□□□□□ -0.27
HDAC6-222	ENST00000478095	ZPR1	O75312	459 aa		13.35	□□□□□ -0.27
HDAC6-222	ENST00000478095	IL6ST	P40189	918 aa	Predicted RBP	13.35	□□□□□ -0.27
HDAC6-222	ENST00000478095	NPM2	Q86SE8	214 aa	Known RBP	13.35	□□□□□ -0.27
HDAC6-222	ENST00000478095	KLHL34	Q8N239	644 aa		13.35	□□□□□ -0.27
HDAC6-222	ENST00000478095	TBC1D2B	Q9UPU7	963 aa		13.35	□□□□□ -0.27
HDAC6-222	ENST00000478095	MYH14	Q7Z406	1995 aa	Known RBP	13.34	□□□□□ -0.27
HDAC6-222	ENST00000478095	ELL2	O00472	640 aa	Predicted RBP	13.34	□□□□□ -0.27
HDAC6-222	ENST00000478095	PRR29	P0C7W0	189 aa		13.34	□□□□□ -0.27
HDAC6-222	ENST00000478095	MYL6B	P14649	208 aa		13.34	□□□□□ -0.27
HDAC6-222	ENST00000478095	FKBP8	Q14318	412 aa		13.34	□□□□□ -0.27
HDAC6-222	ENST00000478095	NGEF	Q8N5V2	710 aa		13.34	□□□□□ -0.27
HDAC6-222	ENST00000478095		A0A087WZG4	1122 aa		13.33	□□□□□ -0.28
HDAC6-222	ENST00000478095	ANXA1	P04083	346 aa		13.33	□□□□□ -0.28
HDAC6-222	ENST00000478095	MMP10	P09238	476 aa		13.33	□□□□□ -0.28

Retrieved 100 of 20,778 RNA–protein pairs in 64 ms