RNA–Protein interactions for RNA: ENST00000477554.5

PTPN7-209, Transcript of protein tyrosine phosphatase, non-receptor type 7, humanhuman

APPRIS ALT2 TSL 2

Gene PTPN7, Length 1,432 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN7-209ENST00000477554 CANXP27824 592 aaKnown RBP23.37■■□□□ 1.33
PTPN7-209ENST00000477554 RFC4P35249 363 aa23.37■■□□□ 1.33
PTPN7-209ENST00000477554 KDM3BQ7LBC6 1761 aa23.37■■□□□ 1.33
PTPN7-209ENST00000477554 HMGB2P26583 209 aaKnown RBP23.36■■□□□ 1.33
PTPN7-209ENST00000477554 FKBP8Q14318 412 aa23.36■■□□□ 1.33
PTPN7-209ENST00000477554 USP16Q9Y5T5 823 aa23.36■■□□□ 1.33
PTPN7-209ENST00000477554 USP42Q9H9J4 1324 aaKnown RBP23.36■■□□□ 1.33
PTPN7-209ENST00000477554 A1BGP04217 495 aa23.35■■□□□ 1.33
PTPN7-209ENST00000477554 ADRA2BP18089 450 aa23.35■■□□□ 1.33
PTPN7-209ENST00000477554 TMPOP42166 694 aaKnown RBP23.35■■□□□ 1.33
PTPN7-209ENST00000477554 FMNL2Q96PY5 1086 aa23.35■■□□□ 1.33
PTPN7-209ENST00000477554 SENP3-EIF4A1A0A087X0R7 540 aa23.34■■□□□ 1.33
PTPN7-209ENST00000477554 RIPK4P57078 832 aa23.34■■□□□ 1.33
PTPN7-209ENST00000477554 NEUROD2Q15784 382 aa23.34■■□□□ 1.33
PTPN7-209ENST00000477554 WWC3Q9ULE0 1092 aa23.34■■□□□ 1.33
PTPN7-209ENST00000477554 COL15A1P39059 1388 aa23.34■■□□□ 1.33
PTPN7-209ENST00000477554 TAF7Q15545 349 aaPredicted RBP23.33■■□□□ 1.33
PTPN7-209ENST00000477554 USPL1Q5W0Q7 1092 aa23.33■■□□□ 1.33
PTPN7-209ENST00000477554 NEFMP07197 916 aa23.33■■□□□ 1.32
PTPN7-209ENST00000477554 WDR43Q15061 677 aaKnown RBP eCLIP23.33■■□□□ 1.32
PTPN7-209ENST00000477554 BCL2L12Q9HB09 334 aa23.33■■□□□ 1.32
PTPN7-209ENST00000477554 DDR1Q08345 913 aa23.32■■□□□ 1.32
PTPN7-209ENST00000477554 KIAA1551Q9HCM1 1747 aa23.31■■□□□ 1.32
PTPN7-209ENST00000477554 TRIM35Q9UPQ4 493 aa23.31■■□□□ 1.32
PTPN7-209ENST00000477554 EIF5P55010 431 aaKnown RBP23.3■■□□□ 1.32
PTPN7-209ENST00000477554 ZNF330Q9Y3S2 320 aaPredicted RBP23.3■■□□□ 1.32
PTPN7-209ENST00000477554 YBX3P16989 372 aaKnown RBP eCLIP23.29■■□□□ 1.323e-8■□□□□ 10.5
PTPN7-209ENST00000477554 RUNDC1Q96C34 613 aa23.29■■□□□ 1.32
PTPN7-209ENST00000477554 PNNQ9H307 717 aaKnown RBP23.29■■□□□ 1.32
PTPN7-209ENST00000477554 STARD3NLO95772 234 aa23.28■■□□□ 1.32
PTPN7-209ENST00000477554 PELP1Q8IZL8 1130 aaKnown RBP23.28■■□□□ 1.32
PTPN7-209ENST00000477554 NLGN1Q8N2Q7 840 aa23.28■■□□□ 1.32
PTPN7-209ENST00000477554 N4BP2Q86UW6 1770 aaPredicted RBP23.28■■□□□ 1.32
PTPN7-209ENST00000477554 NBPF26B4DH59 902 aa23.27■■□□□ 1.32
PTPN7-209ENST00000477554 ANP32CO43423 234 aa23.27■■□□□ 1.32
PTPN7-209ENST00000477554 NBPF10Q6P3W6 841 aaKnown RBP23.27■■□□□ 1.32
PTPN7-209ENST00000477554 NBPF15Q8N660 670 aa23.27■■□□□ 1.32
PTPN7-209ENST00000477554 KIF13BQ9NQT8 1826 aa23.27■■□□□ 1.32
PTPN7-209ENST00000477554 EIF4A1P60842 406 aaKnown RBP23.26■■□□□ 1.31
PTPN7-209ENST00000477554 NARFQ9UHQ1 456 aa23.26■■□□□ 1.31
PTPN7-209ENST00000477554 TBC1D2BQ9UPU7 963 aa23.26■■□□□ 1.31
PTPN7-209ENST00000477554 CD2APQ9Y5K6 639 aa23.26■■□□□ 1.31
PTPN7-209ENST00000477554 LAMB4A4D0S4 1761 aa23.25■■□□□ 1.31
PTPN7-209ENST00000477554 SCN7AQ01118 1682 aa23.25■■□□□ 1.31
PTPN7-209ENST00000477554 C10orf71Q711Q0 1435 aa23.25■■□□□ 1.31
PTPN7-209ENST00000477554 AFDNP55196 1824 aaKnown RBP23.25■■□□□ 1.31
PTPN7-209ENST00000477554 ZPR1O75312 459 aa23.25■■□□□ 1.31
PTPN7-209ENST00000477554 SNRPA1P09661 255 aaKnown RBP23.25■■□□□ 1.31
PTPN7-209ENST00000477554 TM4SF1P30408 202 aa23.25■■□□□ 1.31
PTPN7-209ENST00000477554 POLRMTO00411 1230 aaKnown RBP23.24■■□□□ 1.31
PTPN7-209ENST00000477554 NFIXQ14938 502 aa23.24■■□□□ 1.31
PTPN7-209ENST00000477554 GPR162Q16538 588 aa23.24■■□□□ 1.31
PTPN7-209ENST00000477554 TEX13AQ9BXU3 409 aaPredicted RBP23.24■■□□□ 1.31
PTPN7-209ENST00000477554 PXDNLA1KZ92 1463 aa23.23■■□□□ 1.31
PTPN7-209ENST00000477554 APAF1O14727 1248 aa23.23■■□□□ 1.31
PTPN7-209ENST00000477554 GIGYF1O75420 1035 aaPredicted RBP23.23■■□□□ 1.31
PTPN7-209ENST00000477554 KRT24Q2M2I5 525 aa23.23■■□□□ 1.31
PTPN7-209ENST00000477554 PARP3Q9Y6F1 533 aa23.22■■□□□ 1.31
PTPN7-209ENST00000477554 BCORQ6W2J9 1755 aa23.21■■□□□ 1.31
PTPN7-209ENST00000477554 IL6STP40189 918 aaPredicted RBP23.21■■□□□ 1.31
PTPN7-209ENST00000477554 BICDL1Q6ZP65 573 aa23.21■■□□□ 1.31
PTPN7-209ENST00000477554 TSPYL4Q9UJ04 414 aa23.21■■□□□ 1.31
PTPN7-209ENST00000477554 A0A0G2JLW4 131 aa23.2■■□□□ 1.3
PTPN7-209ENST00000477554 CAMTA2O94983 1202 aa23.2■■□□□ 1.3
PTPN7-209ENST00000477554 TBC1D9BQ66K14 1250 aa23.2■■□□□ 1.3
PTPN7-209ENST00000477554 PNISRQ8TF01 805 aaKnown RBP23.19■■□□□ 1.3
PTPN7-209ENST00000477554 NRXN2Q9P2S2 1712 aa23.19■■□□□ 1.3
PTPN7-209ENST00000477554 LAS1LQ9Y4W2 734 aaKnown RBP23.18■■□□□ 1.3
PTPN7-209ENST00000477554 CARMIL3Q8ND23 1372 aa23.18■■□□□ 1.3
PTPN7-209ENST00000477554 CCDC24Q8N4L8 307 aa23.17■■□□□ 1.3
PTPN7-209ENST00000477554 MRS2Q9HD23 443 aa23.17■■□□□ 1.3
PTPN7-209ENST00000477554 DPEP1P16444 411 aa23.16■■□□□ 1.3
PTPN7-209ENST00000477554 YY1P25490 414 aa23.16■■□□□ 1.3
PTPN7-209ENST00000477554 NGEFQ8N5V2 710 aa23.16■■□□□ 1.3
PTPN7-209ENST00000477554 BRCA1P38398 1863 aaKnown RBP23.16■■□□□ 1.3
PTPN7-209ENST00000477554 DCAF8L1A6NGE4 600 aa23.16■■□□□ 1.3
PTPN7-209ENST00000477554 KCNA3P22001 575 aa23.16■■□□□ 1.3
PTPN7-209ENST00000477554 DZIP3Q86Y13 1208 aaKnown RBP23.16■■□□□ 1.3
PTPN7-209ENST00000477554 CHL1O00533 1208 aa23.15■■□□□ 1.3
PTPN7-209ENST00000477554 ANXA1P04083 346 aa23.15■■□□□ 1.3
PTPN7-209ENST00000477554 LMOD3Q0VAK6 560 aa23.15■■□□□ 1.3
PTPN7-209ENST00000477554 A0A087WZG4 1122 aa23.14■■□□□ 1.29
PTPN7-209ENST00000477554 SERPINB2P05120 415 aa23.14■■□□□ 1.29
PTPN7-209ENST00000477554 CHRNA5P30532 468 aa23.14■■□□□ 1.29
PTPN7-209ENST00000477554 PROSER3Q2NL68 480 aa23.14■■□□□ 1.29
PTPN7-209ENST00000477554 NECTIN2Q92692 538 aa23.14■■□□□ 1.29
PTPN7-209ENST00000477554 CHD4Q14839 1912 aa23.14■■□□□ 1.29
PTPN7-209ENST00000477554 MYL6BP14649 208 aa23.13■■□□□ 1.29
PTPN7-209ENST00000477554 HLFQ16534 295 aa23.13■■□□□ 1.29
PTPN7-209ENST00000477554 ANKRD31Q8N7Z5 1873 aa23.13■■□□□ 1.29
PTPN7-209ENST00000477554 TTLL7Q6ZT98 887 aa23.12■■□□□ 1.29
PTPN7-209ENST00000477554 MIER1Q8N108 512 aa23.12■■□□□ 1.29
PTPN7-209ENST00000477554 EIF2S2P20042 333 aaKnown RBP23.11■■□□□ 1.29
PTPN7-209ENST00000477554 PDIA6Q15084 440 aa23.11■■□□□ 1.29
PTPN7-209ENST00000477554 LRP10Q7Z4F1 713 aa23.11■■□□□ 1.29
PTPN7-209ENST00000477554 MBIPQ9NS73 344 aa23.1■■□□□ 1.29
PTPN7-209ENST00000477554 TGFB2P61812 414 aa23.09■■□□□ 1.29
PTPN7-209ENST00000477554 ZNF853P0CG23 659 aa23.08■■□□□ 1.29
PTPN7-209ENST00000477554 BABAM1Q9NWV8 329 aa23.08■■□□□ 1.28
PTPN7-209ENST00000477554 COL11A2P13942 1736 aaPredicted RBP23.07■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 91.3 ms