RNA–Protein interactions for RNA: ENST00000476391.5

HDAC1-206, Transcript of histone deacetylase 1, humanhuman

TSL 1 (best)

Gene HDAC1, Length 2,409 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC1-206ENST00000476391 ZNF622Q969S3 477 aaKnown RBP eCLIP16.38■□□□□ 0.212e-7■□□□□ 8.9
HDAC1-206ENST00000476391 CHMP4CQ96CF2 233 aa16.38■□□□□ 0.21
HDAC1-206ENST00000476391 ESYT1Q9BSJ8 1104 aa16.38■□□□□ 0.21
HDAC1-206ENST00000476391 ARGLU1Q9NWB6 273 aaPredicted RBP16.38■□□□□ 0.21
HDAC1-206ENST00000476391 PALD1Q9ULE6 856 aa16.38■□□□□ 0.21
HDAC1-206ENST00000476391 COL3A1P02461 1466 aaPredicted RBP16.38■□□□□ 0.21
HDAC1-206ENST00000476391 EPB41L2O43491 1005 aaKnown RBP16.38■□□□□ 0.21
HDAC1-206ENST00000476391 CFAP70Q5T0N1 1121 aa16.38■□□□□ 0.21
HDAC1-206ENST00000476391 SRLQ86TD4 932 aa16.38■□□□□ 0.21
HDAC1-206ENST00000476391 CCDC191Q8NCU4 936 aa16.38■□□□□ 0.21
HDAC1-206ENST00000476391 CBX8Q9HC52 389 aa16.38■□□□□ 0.21
HDAC1-206ENST00000476391 AATKQ6ZMQ8 1374 aa16.38■□□□□ 0.21
HDAC1-206ENST00000476391 ATP10DQ9P241 1426 aa16.38■□□□□ 0.21
HDAC1-206ENST00000476391 TRIM66O15016 1216 aa16.37■□□□□ 0.21
HDAC1-206ENST00000476391 SLC52A1Q9NWF4 448 aa16.37■□□□□ 0.21
HDAC1-206ENST00000476391 ZC3H13Q5T200 1668 aaKnown RBP16.37■□□□□ 0.21
HDAC1-206ENST00000476391 SYT1P21579 422 aa16.37■□□□□ 0.21
HDAC1-206ENST00000476391 GOLGA5Q8TBA6 731 aa16.37■□□□□ 0.21
HDAC1-206ENST00000476391 UBXN6Q9BZV1 441 aa16.37■□□□□ 0.21
HDAC1-206ENST00000476391 FILIP1Q7Z7B0 1213 aa16.36■□□□□ 0.21
HDAC1-206ENST00000476391 FBXO18Q8NFZ0 1043 aa16.36■□□□□ 0.21
HDAC1-206ENST00000476391 NUP62CLQ9H1M0 184 aa16.36■□□□□ 0.21
HDAC1-206ENST00000476391 USP27XA6NNY8 438 aa16.36■□□□□ 0.21
HDAC1-206ENST00000476391 ERCC6LQ2NKX8 1250 aa16.36■□□□□ 0.21
HDAC1-206ENST00000476391 TPRNQ4KMQ1 711 aa16.36■□□□□ 0.21
HDAC1-206ENST00000476391 NOM1Q5C9Z4 860 aaKnown RBP16.36■□□□□ 0.21
HDAC1-206ENST00000476391 TMCO3Q6UWJ1 677 aa16.36■□□□□ 0.21
HDAC1-206ENST00000476391 CCDC144BQ3MJ40 725 aa16.35■□□□□ 0.21
HDAC1-206ENST00000476391 CCDC144CPQ8IYA2 1237 aa16.35■□□□□ 0.21
HDAC1-206ENST00000476391 IQUBQ8NA54 791 aa16.35■□□□□ 0.21
HDAC1-206ENST00000476391 SMARCE1Q969G3 411 aa16.35■□□□□ 0.21
HDAC1-206ENST00000476391 A0A1B0GUL7 405 aa16.35■□□□□ 0.21
HDAC1-206ENST00000476391 CAVIN2O95810 425 aa16.35■□□□□ 0.21
HDAC1-206ENST00000476391 TMX1Q9H3N1 280 aa16.35■□□□□ 0.21
HDAC1-206ENST00000476391 PSD3Q9NYI0 1048 aa16.35■□□□□ 0.21
HDAC1-206ENST00000476391 LCMT1Q9UIC8 334 aa16.35■□□□□ 0.21
HDAC1-206ENST00000476391 CARMIL2Q6F5E8 1435 aa16.34■□□□□ 0.21
HDAC1-206ENST00000476391 ANO6Q4KMQ2 910 aa16.34■□□□□ 0.21
HDAC1-206ENST00000476391 CCAR2Q8N163 923 aaKnown RBP16.34■□□□□ 0.21
HDAC1-206ENST00000476391 JRKLQ9Y4A0 524 aa16.34■□□□□ 0.21
HDAC1-206ENST00000476391 TUBGCP6Q96RT7 1819 aa16.34■□□□□ 0.21
HDAC1-206ENST00000476391 POLR3GO15318 223 aaPredicted RBP16.34■□□□□ 0.21
HDAC1-206ENST00000476391 TUBB4AP04350 444 aa16.34■□□□□ 0.21
HDAC1-206ENST00000476391 SKILP12757 684 aa16.34■□□□□ 0.21
HDAC1-206ENST00000476391 GYS2P54840 703 aa16.34■□□□□ 0.21
HDAC1-206ENST00000476391 AK7Q96M32 723 aa16.34■□□□□ 0.21
HDAC1-206ENST00000476391 UPF3BQ9BZI7 483 aaKnown RBP16.34■□□□□ 0.21
HDAC1-206ENST00000476391 RRP15Q9Y3B9 282 aaKnown RBP16.34■□□□□ 0.21
HDAC1-206ENST00000476391 PDE1AP54750 535 aa16.33■□□□□ 0.2
HDAC1-206ENST00000476391 ST5P78524 1137 aa16.33■□□□□ 0.2
HDAC1-206ENST00000476391 CCDC93Q567U6 631 aa16.33■□□□□ 0.2
HDAC1-206ENST00000476391 CEP85Q6P2H3 762 aa16.33■□□□□ 0.2
HDAC1-206ENST00000476391 SARM1Q6SZW1 724 aa16.33■□□□□ 0.2
HDAC1-206ENST00000476391 MRFAP1L1Q96HT8 127 aa16.33■□□□□ 0.2
HDAC1-206ENST00000476391 ARHGEF40Q8TER5 1519 aa16.33■□□□□ 0.2
HDAC1-206ENST00000476391 PLEKHG2Q9H7P9 1386 aa16.33■□□□□ 0.2
HDAC1-206ENST00000476391 DNM1Q05193 864 aaKnown RBP16.33■□□□□ 0.2
HDAC1-206ENST00000476391 LMOD3Q0VAK6 560 aa16.33■□□□□ 0.2
HDAC1-206ENST00000476391 RBM43Q6ZSC3 357 aaKnown RBP16.33■□□□□ 0.2
HDAC1-206ENST00000476391 SETBP1Q9Y6X0 1596 aa16.32■□□□□ 0.2
HDAC1-206ENST00000476391 QRICH2Q9H0J4 1663 aa16.32■□□□□ 0.2
HDAC1-206ENST00000476391 ARHGAP29Q52LW3 1261 aa16.32■□□□□ 0.2
HDAC1-206ENST00000476391 ANO2Q9NQ90 1003 aa16.32■□□□□ 0.2
HDAC1-206ENST00000476391 NPHP1O15259 732 aa16.31■□□□□ 0.2
HDAC1-206ENST00000476391 EXOC4Q96A65 974 aa16.31■□□□□ 0.2
HDAC1-206ENST00000476391 PUS7Q96PZ0 661 aaKnown RBP16.31■□□□□ 0.2
HDAC1-206ENST00000476391 TNMDQ9H2S6 317 aa16.31■□□□□ 0.2
HDAC1-206ENST00000476391 SMC3Q9UQE7 1217 aa16.31■□□□□ 0.2
HDAC1-206ENST00000476391 FANCAO15360 1455 aa16.31■□□□□ 0.2
HDAC1-206ENST00000476391 ZNF165P49910 485 aa16.3■□□□□ 0.2
HDAC1-206ENST00000476391 TTC31Q49AM3 519 aaPredicted RBP16.3■□□□□ 0.2
HDAC1-206ENST00000476391 ABCF1Q8NE71 845 aaKnown RBP eCLIP16.3■□□□□ 0.2
HDAC1-206ENST00000476391 MAGEA9P43362 315 aa16.3■□□□□ 0.2
HDAC1-206ENST00000476391 CCZ1BP86790 482 aa16.3■□□□□ 0.2
HDAC1-206ENST00000476391 CCZ1P86791 482 aaPredicted RBP16.3■□□□□ 0.2
HDAC1-206ENST00000476391 MLECQ14165 292 aa16.3■□□□□ 0.2
HDAC1-206ENST00000476391 DDX19AQ9NUU7 478 aaKnown RBP16.3■□□□□ 0.2
HDAC1-206ENST00000476391 BCCIPQ9P287 314 aaKnown RBP eCLIP16.3■□□□□ 0.2
HDAC1-206ENST00000476391 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP16.3■□□□□ 0.21e-8■■■□□ 16.9
HDAC1-206ENST00000476391 IFT172Q9UG01 1749 aa16.29■□□□□ 0.2
HDAC1-206ENST00000476391 IVLP07476 585 aa16.29■□□□□ 0.2
HDAC1-206ENST00000476391 TPM1P09493 284 aa16.29■□□□□ 0.2
HDAC1-206ENST00000476391 GNAI1P63096 354 aa16.29■□□□□ 0.2
HDAC1-206ENST00000476391 TSPYL6Q8N831 410 aa16.29■□□□□ 0.2
HDAC1-206ENST00000476391 EXOC6BQ9Y2D4 811 aa16.29■□□□□ 0.2
HDAC1-206ENST00000476391 MYCNP04198 464 aaPredicted RBP16.29■□□□□ 0.2
HDAC1-206ENST00000476391 OAS2P29728 719 aaKnown RBP16.29■□□□□ 0.2
HDAC1-206ENST00000476391 HSPA4P34932 840 aa16.29■□□□□ 0.2
HDAC1-206ENST00000476391 SNW1Q13573 536 aaKnown RBP16.29■□□□□ 0.2
HDAC1-206ENST00000476391 CHMP7Q8WUX9 453 aaPredicted RBP16.29■□□□□ 0.2
HDAC1-206ENST00000476391 ORC3Q9UBD5 711 aaPredicted RBP16.29■□□□□ 0.2
HDAC1-206ENST00000476391 MTMR6Q9Y217 621 aa16.29■□□□□ 0.2
HDAC1-206ENST00000476391 NRXN1Q9ULB1 1477 aa16.28■□□□□ 0.2
HDAC1-206ENST00000476391 CCDC69A6NI79 296 aa16.28■□□□□ 0.2
HDAC1-206ENST00000476391 ATP2B1P20020 1258 aa16.28■□□□□ 0.2
HDAC1-206ENST00000476391 CASTP20810 708 aaKnown RBP16.28■□□□□ 0.2
HDAC1-206ENST00000476391 CHMLP26374 656 aa16.28■□□□□ 0.2
HDAC1-206ENST00000476391 UBXN4Q92575 508 aa16.28■□□□□ 0.2
HDAC1-206ENST00000476391 DEF6Q9H4E7 631 aa16.28■□□□□ 0.2
HDAC1-206ENST00000476391 TRMT1Q9NXH9 659 aaKnown RBP16.28■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms