RNA–Protein interactions for RNA: ENST00000474828.1

SCAF11-206, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 2

Gene SCAF11, Length 757 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-206ENST00000474828 AK7Q96M32 723 aa22.16■■□□□ 1.14
SCAF11-206ENST00000474828 ZNF521Q96K83 1311 aa22.15■■□□□ 1.14
SCAF11-206ENST00000474828 GIGYF1O75420 1035 aaPredicted RBP22.15■■□□□ 1.14
SCAF11-206ENST00000474828 STARD3NLO95772 234 aa22.15■■□□□ 1.14
SCAF11-206ENST00000474828 COL23A1Q86Y22 540 aaPredicted RBP22.15■■□□□ 1.14
SCAF11-206ENST00000474828 TSPYL4Q9UJ04 414 aa22.15■■□□□ 1.14
SCAF11-206ENST00000474828 WDR63Q8IWG1 891 aa22.14■■□□□ 1.13
SCAF11-206ENST00000474828 CCDC87Q9NVE4 849 aa22.14■■□□□ 1.13
SCAF11-206ENST00000474828 GNPATO15228 680 aa22.13■■□□□ 1.13
SCAF11-206ENST00000474828 GNAI1P63096 354 aa22.13■■□□□ 1.13
SCAF11-206ENST00000474828 SOS1Q07889 1333 aaPredicted RBP22.12■■□□□ 1.13
SCAF11-206ENST00000474828 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP22.12■■□□□ 1.13
SCAF11-206ENST00000474828 RTCBQ9Y3I0 505 aaKnown RBP22.12■■□□□ 1.13
SCAF11-206ENST00000474828 USP16Q9Y5T5 823 aa22.12■■□□□ 1.13
SCAF11-206ENST00000474828 LAMB4A4D0S4 1761 aa22.12■■□□□ 1.13
SCAF11-206ENST00000474828 PRAMEF22A3QJZ6 481 aa22.11■■□□□ 1.13
SCAF11-206ENST00000474828 SGIP1Q9BQI5 828 aa22.11■■□□□ 1.13
SCAF11-206ENST00000474828 MTFR1LQ9H019 292 aa22.11■■□□□ 1.13
SCAF11-206ENST00000474828 HOXB7P09629 217 aa22.1■■□□□ 1.13
SCAF11-206ENST00000474828 EIF5P55010 431 aaKnown RBP22.1■■□□□ 1.13
SCAF11-206ENST00000474828 MBIPQ9NS73 344 aa22.1■■□□□ 1.13
SCAF11-206ENST00000474828 ZBTB1Q9Y2K1 713 aa22.1■■□□□ 1.13
SCAF11-206ENST00000474828 IL6STP40189 918 aaPredicted RBP22.08■■□□□ 1.13
SCAF11-206ENST00000474828 TRAPPC3LQ5T215 181 aa22.08■■□□□ 1.13
SCAF11-206ENST00000474828 ARHGEF1Q92888 912 aaKnown RBP22.08■■□□□ 1.13
SCAF11-206ENST00000474828 C4AP0C0L4 1744 aa22.07■■□□□ 1.12
SCAF11-206ENST00000474828 PTGER2P43116 358 aa22.07■■□□□ 1.12
SCAF11-206ENST00000474828 ERBB4Q15303 1308 aa22.06■■□□□ 1.12
SCAF11-206ENST00000474828 A1BGP04217 495 aa22.06■■□□□ 1.12
SCAF11-206ENST00000474828 SMIM5Q71RC9 77 aa22.06■■□□□ 1.12
SCAF11-206ENST00000474828 NBPF26B4DH59 902 aa22.05■■□□□ 1.12
SCAF11-206ENST00000474828 NBPF10Q6P3W6 841 aaKnown RBP22.05■■□□□ 1.12
SCAF11-206ENST00000474828 NBPF15Q8N660 670 aa22.05■■□□□ 1.12
SCAF11-206ENST00000474828 SPON1Q9HCB6 807 aa22.05■■□□□ 1.12
SCAF11-206ENST00000474828 COL15A1P39059 1388 aa22.04■■□□□ 1.12
SCAF11-206ENST00000474828 PIAS4Q8N2W9 510 aaPredicted RBP22.04■■□□□ 1.12
SCAF11-206ENST00000474828 USP42Q9H9J4 1324 aaKnown RBP22.04■■□□□ 1.12
SCAF11-206ENST00000474828 RGL2O15211 777 aa22.03■■□□□ 1.12
SCAF11-206ENST00000474828 PHF14O94880 888 aa22.03■■□□□ 1.12
SCAF11-206ENST00000474828 ZBTB7AO95365 584 aa22.03■■□□□ 1.12
SCAF11-206ENST00000474828 LRP10Q7Z4F1 713 aa22.03■■□□□ 1.12
SCAF11-206ENST00000474828 LAS1LQ9Y4W2 734 aaKnown RBP22.03■■□□□ 1.12
SCAF11-206ENST00000474828 KRT24Q2M2I5 525 aa22.02■■□□□ 1.12
SCAF11-206ENST00000474828 SPINK5Q9NQ38 1064 aaPredicted RBP22.02■■□□□ 1.12
SCAF11-206ENST00000474828 NARFQ9UHQ1 456 aa22.02■■□□□ 1.12
SCAF11-206ENST00000474828 SENP3-EIF4A1A0A087X0R7 540 aa22.01■■□□□ 1.11
SCAF11-206ENST00000474828 GYS1P13807 737 aa22.01■■□□□ 1.11
SCAF11-206ENST00000474828 CANXP27824 592 aaKnown RBP22.01■■□□□ 1.11
SCAF11-206ENST00000474828 PDIA6Q15084 440 aa22.01■■□□□ 1.11
SCAF11-206ENST00000474828 A0A087WZG4 1122 aa22■■□□□ 1.11
SCAF11-206ENST00000474828 RFC4P35249 363 aa22■■□□□ 1.11
SCAF11-206ENST00000474828 DUSP27Q5VZP5 1158 aa21.99■■□□□ 1.11
SCAF11-206ENST00000474828 NLGN1Q8N2Q7 840 aa21.99■■□□□ 1.11
SCAF11-206ENST00000474828 C8orf58Q8NAV2 365 aa21.99■■□□□ 1.11
SCAF11-206ENST00000474828 SALL2Q9Y467 1007 aaPredicted RBP21.99■■□□□ 1.11
SCAF11-206ENST00000474828 FANCIQ9NVI1 1328 aa21.99■■□□□ 1.11
SCAF11-206ENST00000474828 TSR2Q969E8 191 aaKnown RBP21.98■■□□□ 1.11
SCAF11-206ENST00000474828 BCL2L12Q9HB09 334 aa21.98■■□□□ 1.11
SCAF11-206ENST00000474828 ATF5Q9Y2D1 282 aaPredicted RBP21.98■■□□□ 1.11
SCAF11-206ENST00000474828 TRMT2AQ8IZ69 625 aaKnown RBP21.97■■□□□ 1.11
SCAF11-206ENST00000474828 SCN7AQ01118 1682 aa21.97■■□□□ 1.11
SCAF11-206ENST00000474828 SRP68Q9UHB9 627 aaKnown RBP21.96■■□□□ 1.11
SCAF11-206ENST00000474828 MSH5O43196 834 aa21.95■■□□□ 1.1
SCAF11-206ENST00000474828 CAMTA2O94983 1202 aa21.95■■□□□ 1.1
SCAF11-206ENST00000474828 TM4SF1P30408 202 aa21.95■■□□□ 1.1
SCAF11-206ENST00000474828 GOLGA2Q08379 1002 aa21.95■■□□□ 1.1
SCAF11-206ENST00000474828 CHMP4AQ9BY43 222 aa21.95■■□□□ 1.1
SCAF11-206ENST00000474828 MYH16Q9H6N6 1097 aa21.95■■□□□ 1.1
SCAF11-206ENST00000474828 DDX21Q9NR30 783 aaKnown RBP eCLIP21.95■■□□□ 1.1
SCAF11-206ENST00000474828 PPP1R1BQ9UD71 204 aaPredicted RBP21.95■■□□□ 1.1
SCAF11-206ENST00000474828 BCORQ6W2J9 1755 aa21.94■■□□□ 1.1
SCAF11-206ENST00000474828 SLFN5Q08AF3 891 aa21.94■■□□□ 1.1
SCAF11-206ENST00000474828 TSPYL6Q8N831 410 aa21.94■■□□□ 1.1
SCAF11-206ENST00000474828 E9PSI1 815 aa21.93■■□□□ 1.1
SCAF11-206ENST00000474828 ZPR1O75312 459 aa21.93■■□□□ 1.1
SCAF11-206ENST00000474828 PIP4K2AP48426 406 aaPredicted RBP21.93■■□□□ 1.1
SCAF11-206ENST00000474828 FKBP8Q14318 412 aa21.93■■□□□ 1.1
SCAF11-206ENST00000474828 HDGFL1Q5TGJ6 251 aa21.93■■□□□ 1.1
SCAF11-206ENST00000474828 USPL1Q5W0Q7 1092 aa21.93■■□□□ 1.1
SCAF11-206ENST00000474828 CLEC4GQ6UXB4 293 aa21.93■■□□□ 1.1
SCAF11-206ENST00000474828 EIF2S2P20042 333 aaKnown RBP21.92■■□□□ 1.1
SCAF11-206ENST00000474828 POLD1P28340 1107 aa21.92■■□□□ 1.1
SCAF11-206ENST00000474828 PROSER3Q2NL68 480 aa21.92■■□□□ 1.1
SCAF11-206ENST00000474828 DZIP3Q86Y13 1208 aaKnown RBP21.92■■□□□ 1.1
SCAF11-206ENST00000474828 DBF4Q9UBU7 674 aaPredicted RBP21.92■■□□□ 1.1
SCAF11-206ENST00000474828 ERVV-1B6SEH8 477 aa21.91■■□□□ 1.1
SCAF11-206ENST00000474828 MSL1Q68DK7 614 aa21.91■■□□□ 1.1
SCAF11-206ENST00000474828 ARXQ96QS3 562 aa21.91■■□□□ 1.1
SCAF11-206ENST00000474828 TBC1D2BQ9UPU7 963 aa21.91■■□□□ 1.1
SCAF11-206ENST00000474828 VAMP4O75379 141 aa21.9■■□□□ 1.1
SCAF11-206ENST00000474828 TWISTNBQ3B726 338 aaPredicted RBP21.9■■□□□ 1.1
SCAF11-206ENST00000474828 EXOSC9Q06265 439 aaKnown RBP21.89■■□□□ 1.09
SCAF11-206ENST00000474828 CHPF2Q9P2E5 772 aa21.89■■□□□ 1.09
SCAF11-206ENST00000474828 ELL2O00472 640 aaPredicted RBP21.88■■□□□ 1.09
SCAF11-206ENST00000474828 MMP10P09238 476 aa21.88■■□□□ 1.09
SCAF11-206ENST00000474828 HYPKQ9NX55 129 aa21.88■■□□□ 1.09
SCAF11-206ENST00000474828 NRXN2Q9P2S2 1712 aa21.88■■□□□ 1.09
SCAF11-206ENST00000474828 MAP3K15Q6ZN16 1313 aa21.87■■□□□ 1.09
SCAF11-206ENST00000474828 MYL6BP14649 208 aa21.87■■□□□ 1.09
SCAF11-206ENST00000474828 DDR1Q08345 913 aa21.87■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 56.1 ms