RNA–Protein interactions for RNA: ENST00000474047.5

VAMP4-203, Transcript of vesicle associated membrane protein 4, humanhuman

TSL 1 (best)

Gene VAMP4, Length 1,738 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP4-203ENST00000474047 MIS18AQ9NYP9 233 aa18.69■□□□□ 0.58
VAMP4-203ENST00000474047 MYH14Q7Z406 1995 aaKnown RBP18.69■□□□□ 0.58
VAMP4-203ENST00000474047 UBR2Q8IWV8 1755 aa18.69■□□□□ 0.58
VAMP4-203ENST00000474047 CANXP27824 592 aaKnown RBP18.69■□□□□ 0.58
VAMP4-203ENST00000474047 NPM2Q86SE8 214 aaKnown RBP18.69■□□□□ 0.58
VAMP4-203ENST00000474047 NLGN1Q8N2Q7 840 aa18.68■□□□□ 0.58
VAMP4-203ENST00000474047 CICQ96RK0 1608 aaPredicted RBP18.67■□□□□ 0.58
VAMP4-203ENST00000474047 ZPR1O75312 459 aa18.67■□□□□ 0.58
VAMP4-203ENST00000474047 MRS2Q9HD23 443 aa18.67■□□□□ 0.58
VAMP4-203ENST00000474047 SNRPA1P09661 255 aaKnown RBP18.66■□□□□ 0.58
VAMP4-203ENST00000474047 ZBTB1Q9Y2K1 713 aa18.66■□□□□ 0.58
VAMP4-203ENST00000474047 ZNF330Q9Y3S2 320 aaPredicted RBP18.66■□□□□ 0.58
VAMP4-203ENST00000474047 SOS1Q07889 1333 aaPredicted RBP18.65■□□□□ 0.58
VAMP4-203ENST00000474047 COL24A1Q17RW2 1714 aa18.65■□□□□ 0.58
VAMP4-203ENST00000474047 MMP10P09238 476 aa18.64■□□□□ 0.57
VAMP4-203ENST00000474047 CCDC184Q52MB2 194 aa18.64■□□□□ 0.57
VAMP4-203ENST00000474047 SRP68Q9UHB9 627 aaKnown RBP18.64■□□□□ 0.57
VAMP4-203ENST00000474047 A0A087WZG4 1122 aa18.63■□□□□ 0.57
VAMP4-203ENST00000474047 GYS1P13807 737 aa18.63■□□□□ 0.57
VAMP4-203ENST00000474047 TSPYL4Q9UJ04 414 aa18.63■□□□□ 0.57
VAMP4-203ENST00000474047 COL15A1P39059 1388 aa18.63■□□□□ 0.57
VAMP4-203ENST00000474047 USP16Q9Y5T5 823 aa18.63■□□□□ 0.57
VAMP4-203ENST00000474047 USP42Q9H9J4 1324 aaKnown RBP18.62■□□□□ 0.57
VAMP4-203ENST00000474047 A1BGP04217 495 aa18.62■□□□□ 0.57
VAMP4-203ENST00000474047 LAS1LQ9Y4W2 734 aaKnown RBP18.62■□□□□ 0.57
VAMP4-203ENST00000474047 PARP3Q9Y6F1 533 aa18.62■□□□□ 0.57
VAMP4-203ENST00000474047 APAF1O14727 1248 aa18.61■□□□□ 0.57
VAMP4-203ENST00000474047 USPL1Q5W0Q7 1092 aa18.61■□□□□ 0.57
VAMP4-203ENST00000474047 PRAMEF22A3QJZ6 481 aa18.6■□□□□ 0.57
VAMP4-203ENST00000474047 NARFQ9UHQ1 456 aa18.6■□□□□ 0.57
VAMP4-203ENST00000474047 C4AP0C0L4 1744 aa18.6■□□□□ 0.57
VAMP4-203ENST00000474047 IL6STP40189 918 aaPredicted RBP18.6■□□□□ 0.57
VAMP4-203ENST00000474047 EIF5P55010 431 aaKnown RBP18.6■□□□□ 0.57
VAMP4-203ENST00000474047 FKBP8Q14318 412 aa18.6■□□□□ 0.57
VAMP4-203ENST00000474047 PELP1Q8IZL8 1130 aaKnown RBP18.6■□□□□ 0.57
VAMP4-203ENST00000474047 CD2APQ9Y5K6 639 aa18.6■□□□□ 0.57
VAMP4-203ENST00000474047 EIF4A1P60842 406 aaKnown RBP18.59■□□□□ 0.57
VAMP4-203ENST00000474047 BABAM1Q9NWV8 329 aa18.59■□□□□ 0.57
VAMP4-203ENST00000474047 TRIM35Q9UPQ4 493 aa18.59■□□□□ 0.57
VAMP4-203ENST00000474047 GPR162Q16538 588 aa18.58■□□□□ 0.57
VAMP4-203ENST00000474047 NLGN2Q8NFZ4 835 aa18.58■□□□□ 0.57
VAMP4-203ENST00000474047 PIP4K2AP48426 406 aaPredicted RBP18.57■□□□□ 0.56
VAMP4-203ENST00000474047 TBC1D2BQ9UPU7 963 aa18.57■□□□□ 0.56
VAMP4-203ENST00000474047 GIGYF1O75420 1035 aaPredicted RBP18.57■□□□□ 0.56
VAMP4-203ENST00000474047 KDM3BQ7LBC6 1761 aa18.57■□□□□ 0.56
VAMP4-203ENST00000474047 CALD1Q05682 793 aaKnown RBP18.56■□□□□ 0.56
VAMP4-203ENST00000474047 DZIP3Q86Y13 1208 aaKnown RBP18.54■□□□□ 0.56
VAMP4-203ENST00000474047 BICDL1Q6ZP65 573 aa18.54■□□□□ 0.56
VAMP4-203ENST00000474047 FAM9BQ8IZU0 186 aa18.54■□□□□ 0.56
VAMP4-203ENST00000474047 CHL1O00533 1208 aa18.53■□□□□ 0.56
VAMP4-203ENST00000474047 NGEFQ8N5V2 710 aa18.53■□□□□ 0.56
VAMP4-203ENST00000474047 SENP3-EIF4A1A0A087X0R7 540 aa18.52■□□□□ 0.56
VAMP4-203ENST00000474047 EIF2S2P20042 333 aaKnown RBP18.52■□□□□ 0.56
VAMP4-203ENST00000474047 TM4SF1P30408 202 aa18.52■□□□□ 0.56
VAMP4-203ENST00000474047 NBPF26B4DH59 902 aa18.52■□□□□ 0.55
VAMP4-203ENST00000474047 DDR1Q08345 913 aa18.52■□□□□ 0.55
VAMP4-203ENST00000474047 NFIXQ14938 502 aa18.52■□□□□ 0.55
VAMP4-203ENST00000474047 NBPF10Q6P3W6 841 aaKnown RBP18.52■□□□□ 0.55
VAMP4-203ENST00000474047 NBPF15Q8N660 670 aa18.52■□□□□ 0.55
VAMP4-203ENST00000474047 CFAP44Q96MT7 982 aa18.52■□□□□ 0.55
VAMP4-203ENST00000474047 MYL6BP14649 208 aa18.51■□□□□ 0.55
VAMP4-203ENST00000474047 BCL2L12Q9HB09 334 aa18.51■□□□□ 0.55
VAMP4-203ENST00000474047 POLRMTO00411 1230 aaKnown RBP18.5■□□□□ 0.55
VAMP4-203ENST00000474047 NPHP1O15259 732 aa18.5■□□□□ 0.55
VAMP4-203ENST00000474047 GNAI1P63096 354 aa18.5■□□□□ 0.55
VAMP4-203ENST00000474047 ZNF652Q9Y2D9 606 aa18.5■□□□□ 0.55
VAMP4-203ENST00000474047 LAMB4A4D0S4 1761 aa18.5■□□□□ 0.55
VAMP4-203ENST00000474047 SERPINB2P05120 415 aa18.49■□□□□ 0.55
VAMP4-203ENST00000474047 TGFB2P61812 414 aa18.49■□□□□ 0.55
VAMP4-203ENST00000474047 CAMTA2O94983 1202 aa18.49■□□□□ 0.55
VAMP4-203ENST00000474047 TBC1D9BQ66K14 1250 aa18.49■□□□□ 0.55
VAMP4-203ENST00000474047 SETDB2Q96T68 719 aa18.49■□□□□ 0.55
VAMP4-203ENST00000474047 WWC3Q9ULE0 1092 aa18.49■□□□□ 0.55
VAMP4-203ENST00000474047 NECTIN2Q92692 538 aa18.48■□□□□ 0.55
VAMP4-203ENST00000474047 IFT57Q9NWB7 429 aa18.48■□□□□ 0.55
VAMP4-203ENST00000474047 SALL2Q9Y467 1007 aaPredicted RBP18.48■□□□□ 0.55
VAMP4-203ENST00000474047 A0A0G2JLW4 131 aa18.47■□□□□ 0.55
VAMP4-203ENST00000474047 ERBB4Q15303 1308 aa18.47■□□□□ 0.55
VAMP4-203ENST00000474047 KIF6Q6ZMV9 814 aa18.47■□□□□ 0.55
VAMP4-203ENST00000474047 MBIPQ9NS73 344 aa18.47■□□□□ 0.55
VAMP4-203ENST00000474047 GRIN3BO60391 1043 aa18.46■□□□□ 0.55
VAMP4-203ENST00000474047 CLEC4GQ6UXB4 293 aa18.46■□□□□ 0.55
VAMP4-203ENST00000474047 C10orf71Q711Q0 1435 aa18.46■□□□□ 0.55
VAMP4-203ENST00000474047 KRT24Q2M2I5 525 aa18.46■□□□□ 0.55
VAMP4-203ENST00000474047 DPEP1P16444 411 aa18.45■□□□□ 0.54
VAMP4-203ENST00000474047 CCDC27Q2M243 656 aa18.45■□□□□ 0.54
VAMP4-203ENST00000474047 WWC1Q8IX03 1113 aa18.45■□□□□ 0.54
VAMP4-203ENST00000474047 SCN7AQ01118 1682 aa18.44■□□□□ 0.54
VAMP4-203ENST00000474047 ZNF853P0CG23 659 aa18.44■□□□□ 0.54
VAMP4-203ENST00000474047 YBX3P16989 372 aaKnown RBP eCLIP18.44■□□□□ 0.54
VAMP4-203ENST00000474047 YY1P25490 414 aa18.44■□□□□ 0.54
VAMP4-203ENST00000474047 CARMIL3Q8ND23 1372 aa18.44■□□□□ 0.54
VAMP4-203ENST00000474047 HDGFL1Q5TGJ6 251 aa18.43■□□□□ 0.54
VAMP4-203ENST00000474047 DUSP27Q5VZP5 1158 aa18.43■□□□□ 0.54
VAMP4-203ENST00000474047 HOXB7P09629 217 aa18.43■□□□□ 0.54
VAMP4-203ENST00000474047 NIP7Q9Y221 180 aaKnown RBP eCLIP18.43■□□□□ 0.54
VAMP4-203ENST00000474047 KIF13BQ9NQT8 1826 aa18.42■□□□□ 0.54
VAMP4-203ENST00000474047 MAP3K15Q6ZN16 1313 aa18.42■□□□□ 0.54
VAMP4-203ENST00000474047 PXDNLA1KZ92 1463 aa18.42■□□□□ 0.54
VAMP4-203ENST00000474047 ERVV-1B6SEH8 477 aa18.42■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms