RNA–Protein interactions for RNA: ENST00000473373.1

CPNE1-222, Transcript of copine 1, humanhuman

TSL 2

Gene CPNE1, Length 821 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-222ENST00000473373 DCTN1Q14203 1278 aa15.23■□□□□ 0.03
CPNE1-222ENST00000473373 ZNF790Q6PG37 636 aa15.23■□□□□ 0.03
CPNE1-222ENST00000473373 FMNL2Q96PY5 1086 aa15.23■□□□□ 0.03
CPNE1-222ENST00000473373 MMP10P09238 476 aa15.22■□□□□ 0.03
CPNE1-222ENST00000473373 CANXP27824 592 aaKnown RBP15.22■□□□□ 0.03
CPNE1-222ENST00000473373 NLGN1Q8N2Q7 840 aa15.22■□□□□ 0.03
CPNE1-222ENST00000473373 PARP3Q9Y6F1 533 aa15.22■□□□□ 0.03
CPNE1-222ENST00000473373 VSIG10Q8N0Z9 540 aa15.21■□□□□ 0.03
CPNE1-222ENST00000473373 TEX13AQ9BXU3 409 aaPredicted RBP15.21■□□□□ 0.03
CPNE1-222ENST00000473373 HEG1Q9ULI3 1381 aa15.21■□□□□ 0.02
CPNE1-222ENST00000473373 N4BP2Q86UW6 1770 aaPredicted RBP15.21■□□□□ 0.02
CPNE1-222ENST00000473373 CEP350Q5VT06 3117 aa15.2■□□□□ 0.02
CPNE1-222ENST00000473373 HTATSF1O43719 755 aaKnown RBP15.2■□□□□ 0.02
CPNE1-222ENST00000473373 CYP19A1P11511 503 aaPredicted RBP15.2■□□□□ 0.02
CPNE1-222ENST00000473373 ZNF496Q96IT1 587 aaPredicted RBP15.2■□□□□ 0.02
CPNE1-222ENST00000473373 COL15A1P39059 1388 aa15.2■□□□□ 0.02
CPNE1-222ENST00000473373 CEMIPQ8WUJ3 1361 aa15.2■□□□□ 0.02
CPNE1-222ENST00000473373 NFE2L2Q16236 605 aa15.19■□□□□ 0.02
CPNE1-222ENST00000473373 INTS5Q6P9B9 1019 aaKnown RBP15.19■□□□□ 0.02
CPNE1-222ENST00000473373 SRP68Q9UHB9 627 aaKnown RBP15.19■□□□□ 0.02
CPNE1-222ENST00000473373 ZBTB1Q9Y2K1 713 aa15.19■□□□□ 0.02
CPNE1-222ENST00000473373 ZNF316A6NFI3 1004 aaPredicted RBP15.18■□□□□ 0.02
CPNE1-222ENST00000473373 GYS1P13807 737 aa15.18■□□□□ 0.02
CPNE1-222ENST00000473373 HSPA6P17066 643 aa15.18■□□□□ 0.02
CPNE1-222ENST00000473373 NEUROD2Q15784 382 aa15.18■□□□□ 0.02
CPNE1-222ENST00000473373 LAMB4A4D0S4 1761 aa15.18■□□□□ 0.02
CPNE1-222ENST00000473373 USP42Q9H9J4 1324 aaKnown RBP15.17■□□□□ 0.02
CPNE1-222ENST00000473373 KDM3BQ7LBC6 1761 aa15.17■□□□□ 0.02
CPNE1-222ENST00000473373 ADCY9O60503 1353 aa15.17■□□□□ 0.02
CPNE1-222ENST00000473373 TAF7Q15545 349 aaPredicted RBP15.17■□□□□ 0.02
CPNE1-222ENST00000473373 CCDC146Q8IYE0 955 aa15.17■□□□□ 0.02
CPNE1-222ENST00000473373 PRKRIP1Q9H875 184 aaPredicted RBP15.17■□□□□ 0.02
CPNE1-222ENST00000473373 KIF13BQ9NQT8 1826 aa15.17■□□□□ 0.02
CPNE1-222ENST00000473373 SOS1Q07889 1333 aaPredicted RBP15.17■□□□□ 0.02
CPNE1-222ENST00000473373 AFDNP55196 1824 aaKnown RBP15.16■□□□□ 0.02
CPNE1-222ENST00000473373 A0A087WZG4 1122 aa15.16■□□□□ 0.02
CPNE1-222ENST00000473373 NPHP1O15259 732 aa15.16■□□□□ 0.02
CPNE1-222ENST00000473373 KCNQ3O43525 872 aa15.16■□□□□ 0.02
CPNE1-222ENST00000473373 RIPK4P57078 832 aa15.16■□□□□ 0.02
CPNE1-222ENST00000473373 LMOD3Q0VAK6 560 aa15.16■□□□□ 0.02
CPNE1-222ENST00000473373 USPL1Q5W0Q7 1092 aa15.16■□□□□ 0.02
CPNE1-222ENST00000473373 PNISRQ8TF01 805 aaKnown RBP15.16■□□□□ 0.02
CPNE1-222ENST00000473373 PLEKHF1Q96S99 279 aa15.16■□□□□ 0.02
CPNE1-222ENST00000473373 SNRPA1P09661 255 aaKnown RBP15.15■□□□□ 0.02
CPNE1-222ENST00000473373 MIS18AQ9NYP9 233 aa15.15■□□□□ 0.02
CPNE1-222ENST00000473373 FKBP8Q14318 412 aa15.14■□□□□ 0.01
CPNE1-222ENST00000473373 THUMPD2Q9BTF0 503 aaKnown RBP15.14■□□□□ 0.01
CPNE1-222ENST00000473373 RRP7AQ9Y3A4 280 aaKnown RBP15.14■□□□□ 0.01
CPNE1-222ENST00000473373 SCN7AQ01118 1682 aa15.13■□□□□ 0.01
CPNE1-222ENST00000473373 ANP32CO43423 234 aa15.13■□□□□ 0.01
CPNE1-222ENST00000473373 A1BGP04217 495 aa15.13■□□□□ 0.01
CPNE1-222ENST00000473373 BICDL1Q6ZP65 573 aa15.13■□□□□ 0.01
CPNE1-222ENST00000473373 NARFQ9UHQ1 456 aa15.13■□□□□ 0.01
CPNE1-222ENST00000473373 KIF3CO14782 793 aa15.12■□□□□ 0.01
CPNE1-222ENST00000473373 RUNDC1Q96C34 613 aa15.12■□□□□ 0.01
CPNE1-222ENST00000473373 TSPYL4Q9UJ04 414 aa15.12■□□□□ 0.01
CPNE1-222ENST00000473373 LAS1LQ9Y4W2 734 aaKnown RBP15.12■□□□□ 0.01
CPNE1-222ENST00000473373 BCORQ6W2J9 1755 aa15.11■□□□□ 0.01
CPNE1-222ENST00000473373 IL6STP40189 918 aaPredicted RBP15.11■□□□□ 0.01
CPNE1-222ENST00000473373 TMPOP42166 694 aaKnown RBP15.11■□□□□ 0.01
CPNE1-222ENST00000473373 PIP4K2AP48426 406 aaPredicted RBP15.11■□□□□ 0.01
CPNE1-222ENST00000473373 TBC1D2BQ9UPU7 963 aa15.11■□□□□ 0.01
CPNE1-222ENST00000473373 USP16Q9Y5T5 823 aa15.11■□□□□ 0.01
CPNE1-222ENST00000473373 CACNA1SQ13698 1873 aa15.11■□□□□ 0.01
CPNE1-222ENST00000473373 DZIP3Q86Y13 1208 aaKnown RBP15.1■□□□□ 0.01
CPNE1-222ENST00000473373 ADAMTS8Q9UP79 889 aa15.1■□□□□ 0.01
CPNE1-222ENST00000473373 BCS1LQ9Y276 419 aa15.1■□□□□ 0.01
CPNE1-222ENST00000473373 C10orf71Q711Q0 1435 aa15.09■□□□□ 0.01
CPNE1-222ENST00000473373 A0A0G2JLW4 131 aa15.09■□□□□ 0.01
CPNE1-222ENST00000473373 PRAMEF22A3QJZ6 481 aa15.09■□□□□ 0.01
CPNE1-222ENST00000473373 EIF5P55010 431 aaKnown RBP15.09■□□□□ 0.01
CPNE1-222ENST00000473373 TGFB2P61812 414 aa15.09■□□□□ 0.01
CPNE1-222ENST00000473373 NGEFQ8N5V2 710 aa15.09■□□□□ 0.01
CPNE1-222ENST00000473373 BRCA1P38398 1863 aaKnown RBP15.09■□□□□ 0.01
CPNE1-222ENST00000473373 DDR1Q08345 913 aa15.08■□□□□ 0
CPNE1-222ENST00000473373 NFIXQ14938 502 aa15.08■□□□□ 0
CPNE1-222ENST00000473373 ZNF652Q9Y2D9 606 aa15.08■□□□□ 0
CPNE1-222ENST00000473373 KIAA1551Q9HCM1 1747 aa15.08■□□□□ 0
CPNE1-222ENST00000473373 ARFGEF1Q9Y6D6 1849 aa15.08■□□□□ 0
CPNE1-222ENST00000473373 POLRMTO00411 1230 aaKnown RBP15.07■□□□□ 0
CPNE1-222ENST00000473373 SERPINB2P05120 415 aa15.07■□□□□ 0
CPNE1-222ENST00000473373 ARHGAP27Q6ZUM4 889 aa15.07■□□□□ 0
CPNE1-222ENST00000473373 NUP98P52948 1817 aa15.07■□□□□ 0
CPNE1-222ENST00000473373 PXDNLA1KZ92 1463 aa15.07■□□□□ 0
CPNE1-222ENST00000473373 DPEP1P16444 411 aa15.06■□□□□ 0
CPNE1-222ENST00000473373 SETDB2Q96T68 719 aa15.06■□□□□ 0
CPNE1-222ENST00000473373 MYL6BP14649 208 aa15.05■□□□□ -0
CPNE1-222ENST00000473373 EIF2S2P20042 333 aaKnown RBP15.05■□□□□ -0
CPNE1-222ENST00000473373 TM4SF1P30408 202 aa15.05■□□□□ -0
CPNE1-222ENST00000473373 EIF4A1P60842 406 aaKnown RBP15.05■□□□□ -0
CPNE1-222ENST00000473373 TBC1D9BQ66K14 1250 aa15.05■□□□□ -0
CPNE1-222ENST00000473373 KIF6Q6ZMV9 814 aa15.05■□□□□ -0
CPNE1-222ENST00000473373 MRS2Q9HD23 443 aa15.05■□□□□ -0
CPNE1-222ENST00000473373 PIM2Q9P1W9 311 aa15.05■□□□□ -0
CPNE1-222ENST00000473373 NRXN2Q9P2S2 1712 aa15.05■□□□□ -0
CPNE1-222ENST00000473373 DLEC1Q9Y238 1755 aa15.04■□□□□ -0
CPNE1-222ENST00000473373 CARMIL3Q8ND23 1372 aa15.04■□□□□ -0
CPNE1-222ENST00000473373 TOMM70O94826 608 aa15.04■□□□□ -0
CPNE1-222ENST00000473373 APLP1P51693 650 aa15.04■□□□□ -0
CPNE1-222ENST00000473373 NMRK2Q9NPI5 230 aa15.04■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms