RNA–Protein interactions for RNA: ENST00000471947.1

CCDC88A-211, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 3,713 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-211ENST00000471947 PKP1Q13835 747 aa16.73■□□□□ 0.27
CCDC88A-211ENST00000471947 STK11IPQ8N1F8 1099 aa16.73■□□□□ 0.27
CCDC88A-211ENST00000471947 FSD1Q9BTV5 496 aa16.73■□□□□ 0.27
CCDC88A-211ENST00000471947 SOS1Q07889 1333 aaPredicted RBP16.73■□□□□ 0.27
CCDC88A-211ENST00000471947 ATP8B2P98198 1209 aa16.73■□□□□ 0.27
CCDC88A-211ENST00000471947 STK3Q13188 491 aa16.73■□□□□ 0.27
CCDC88A-211ENST00000471947 GBP4Q96PP9 640 aa16.73■□□□□ 0.27
CCDC88A-211ENST00000471947 A0A087WZG4 1122 aa16.72■□□□□ 0.27
CCDC88A-211ENST00000471947 AGLP35573 1532 aa16.72■□□□□ 0.27
CCDC88A-211ENST00000471947 ZNF335Q9H4Z2 1342 aaPredicted RBP16.72■□□□□ 0.27
CCDC88A-211ENST00000471947 GOLGA6L3A6NEY3 463 aa16.72■□□□□ 0.27
CCDC88A-211ENST00000471947 AMOTQ4VCS5 1084 aa16.72■□□□□ 0.27
CCDC88A-211ENST00000471947 PRPF40AO75400 957 aaKnown RBP16.71■□□□□ 0.27
CCDC88A-211ENST00000471947 SNRKQ9NRH2 765 aa16.71■□□□□ 0.27
CCDC88A-211ENST00000471947 CADPS2Q86UW7 1296 aa16.71■□□□□ 0.27
CCDC88A-211ENST00000471947 ACSBG1Q96GR2 724 aa16.71■□□□□ 0.27
CCDC88A-211ENST00000471947 ZNF790Q6PG37 636 aa16.7■□□□□ 0.26
CCDC88A-211ENST00000471947 BICC1Q9H694 974 aaKnown RBP16.7■□□□□ 0.26
CCDC88A-211ENST00000471947 PALD1Q9ULE6 856 aa16.7■□□□□ 0.26
CCDC88A-211ENST00000471947 IFNL2Q8IZJ0 200 aa16.7■□□□□ 0.26
CCDC88A-211ENST00000471947 PANK2Q9BZ23 570 aa16.7■□□□□ 0.26
CCDC88A-211ENST00000471947 CEP170BQ9Y4F5 1589 aaPredicted RBP16.7■□□□□ 0.26
CCDC88A-211ENST00000471947 ARHGEF10O15013 1369 aa16.7■□□□□ 0.26
CCDC88A-211ENST00000471947 OVOS2A0A0J9YW53 1432 aa16.7■□□□□ 0.26
CCDC88A-211ENST00000471947 OVOS2Q6IE36 1432 aa16.7■□□□□ 0.26
CCDC88A-211ENST00000471947 RNF214Q8ND24 703 aa16.7■□□□□ 0.26
CCDC88A-211ENST00000471947 GIGYF1O75420 1035 aaPredicted RBP16.69■□□□□ 0.26
CCDC88A-211ENST00000471947 CAVIN1Q6NZI2 390 aaKnown RBP16.69■□□□□ 0.26
CCDC88A-211ENST00000471947 DLC1Q96QB1 1528 aa16.69■□□□□ 0.26
CCDC88A-211ENST00000471947 NPHP1O15259 732 aa16.69■□□□□ 0.26
CCDC88A-211ENST00000471947 PRPF40BQ6NWY9 871 aaKnown RBP16.68■□□□□ 0.26
CCDC88A-211ENST00000471947 SUCLG2Q96I99 432 aa16.68■□□□□ 0.26
CCDC88A-211ENST00000471947 ANKRD13DQ6ZTN6 518 aa16.68■□□□□ 0.26
CCDC88A-211ENST00000471947 KIAA0232Q92628 1395 aa16.68■□□□□ 0.26
CCDC88A-211ENST00000471947 VPS37CA5D8V6 355 aaPredicted RBP16.68■□□□□ 0.26
CCDC88A-211ENST00000471947 HSP90AB3PQ58FF7 597 aa16.68■□□□□ 0.26
CCDC88A-211ENST00000471947 ZNF594Q96JF6 807 aaPredicted RBP16.67■□□□□ 0.26
CCDC88A-211ENST00000471947 NPHP4O75161 1426 aaPredicted RBP16.67■□□□□ 0.26
CCDC88A-211ENST00000471947 CHMP4CQ96CF2 233 aa16.67■□□□□ 0.26
CCDC88A-211ENST00000471947 KIF1BPQ96EK5 621 aa16.67■□□□□ 0.26
CCDC88A-211ENST00000471947 GPATCH3Q96I76 525 aa16.67■□□□□ 0.26
CCDC88A-211ENST00000471947 HSP90B1P14625 803 aaKnown RBP16.67■□□□□ 0.26
CCDC88A-211ENST00000471947 USP26Q9BXU7 913 aa16.67■□□□□ 0.26
CCDC88A-211ENST00000471947 LARP1Q6PKG0 1096 aaKnown RBP16.66■□□□□ 0.26
CCDC88A-211ENST00000471947 CNTROBQ8N137 903 aa16.66■□□□□ 0.26
CCDC88A-211ENST00000471947 CDC42BPGQ6DT37 1551 aa16.66■□□□□ 0.26
CCDC88A-211ENST00000471947 KCNQ4P56696 695 aa16.66■□□□□ 0.26
CCDC88A-211ENST00000471947 RABEP1Q15276 862 aa16.66■□□□□ 0.26
CCDC88A-211ENST00000471947 KSR2Q6VAB6 950 aa16.66■□□□□ 0.26
CCDC88A-211ENST00000471947 NPHP3Q7Z494 1330 aa16.66■□□□□ 0.26
CCDC88A-211ENST00000471947 CHGBP05060 677 aa16.66■□□□□ 0.26
CCDC88A-211ENST00000471947 FERMT3Q86UX7 667 aa16.66■□□□□ 0.26
CCDC88A-211ENST00000471947 LRRC2Q9BYS8 371 aa16.66■□□□□ 0.26
CCDC88A-211ENST00000471947 GRM8O00222 908 aa16.65■□□□□ 0.26
CCDC88A-211ENST00000471947 FKBP4Q02790 459 aaKnown RBP eCLIP16.65■□□□□ 0.26
CCDC88A-211ENST00000471947 DDX46Q7L014 1031 aaKnown RBP16.65■□□□□ 0.26
CCDC88A-211ENST00000471947 TLR7Q9NYK1 1049 aaKnown RBP16.65■□□□□ 0.26
CCDC88A-211ENST00000471947 CRB1P82279 1406 aa16.65■□□□□ 0.26
CCDC88A-211ENST00000471947 SLFNL1Q499Z3 407 aa16.65■□□□□ 0.26
CCDC88A-211ENST00000471947 TTLL7Q6ZT98 887 aa16.65■□□□□ 0.26
CCDC88A-211ENST00000471947 LMBR1LQ6UX01 489 aa16.65■□□□□ 0.26
CCDC88A-211ENST00000471947 TRIM44Q96DX7 344 aaPredicted RBP16.65■□□□□ 0.26
CCDC88A-211ENST00000471947 BTG4Q9NY30 223 aa16.65■□□□□ 0.26
CCDC88A-211ENST00000471947 RBM27Q9P2N5 1060 aaKnown RBP16.65■□□□□ 0.26
CCDC88A-211ENST00000471947 ERBB3P21860 1342 aa16.64■□□□□ 0.25
CCDC88A-211ENST00000471947 JAKMIP1Q96N16 626 aaKnown RBP16.64■□□□□ 0.25
CCDC88A-211ENST00000471947 CYP27B1O15528 508 aa16.64■□□□□ 0.25
CCDC88A-211ENST00000471947 CASTP20810 708 aaKnown RBP16.64■□□□□ 0.25
CCDC88A-211ENST00000471947 ZCRB1Q8TBF4 217 aaKnown RBP16.64■□□□□ 0.25
CCDC88A-211ENST00000471947 ANP32BQ92688 251 aaKnown RBP16.64■□□□□ 0.25
CCDC88A-211ENST00000471947 NEURL4Q96JN8 1562 aa16.64■□□□□ 0.25
CCDC88A-211ENST00000471947 BEND3Q5T5X7 828 aa16.63■□□□□ 0.25
CCDC88A-211ENST00000471947 BICDL1Q6ZP65 573 aa16.63■□□□□ 0.25
CCDC88A-211ENST00000471947 RAB11FIP4Q86YS3 637 aa16.63■□□□□ 0.25
CCDC88A-211ENST00000471947 ESYT1Q9BSJ8 1104 aa16.63■□□□□ 0.25
CCDC88A-211ENST00000471947 SLAIN2Q9P270 581 aa16.63■□□□□ 0.25
CCDC88A-211ENST00000471947 MED14O60244 1454 aa16.63■□□□□ 0.25
CCDC88A-211ENST00000471947 TIMM10P62072 90 aa16.63■□□□□ 0.25
CCDC88A-211ENST00000471947 NECAB1Q8N987 351 aa16.63■□□□□ 0.25
CCDC88A-211ENST00000471947 FMNL2Q96PY5 1086 aa16.63■□□□□ 0.25
CCDC88A-211ENST00000471947 IL25Q9H293 177 aa16.63■□□□□ 0.25
CCDC88A-211ENST00000471947 CHMLP26374 656 aa16.62■□□□□ 0.25
CCDC88A-211ENST00000471947 TBC1D2BQ9UPU7 963 aa16.62■□□□□ 0.25
CCDC88A-211ENST00000471947 FAM227BQ96M60 508 aa16.62■□□□□ 0.25
CCDC88A-211ENST00000471947 SIPA1L2Q9P2F8 1722 aaPredicted RBP16.62■□□□□ 0.25
CCDC88A-211ENST00000471947 USP31Q70CQ4 1352 aa16.62■□□□□ 0.25
CCDC88A-211ENST00000471947 HTATSF1O43719 755 aaKnown RBP16.62■□□□□ 0.25
CCDC88A-211ENST00000471947 HYPKQ9NX55 129 aa16.62■□□□□ 0.25
CCDC88A-211ENST00000471947 SNRPA1P09661 255 aaKnown RBP16.61■□□□□ 0.25
CCDC88A-211ENST00000471947 PHKG2P15735 406 aa16.61■□□□□ 0.25
CCDC88A-211ENST00000471947 CCDC129Q6ZRS4 1044 aa16.61■□□□□ 0.25
CCDC88A-211ENST00000471947 SLC52A2Q9HAB3 445 aa16.61■□□□□ 0.25
CCDC88A-211ENST00000471947 FIBPO43427 364 aa16.61■□□□□ 0.25
CCDC88A-211ENST00000471947 WASHC4Q2M389 1173 aa16.61■□□□□ 0.25
CCDC88A-211ENST00000471947 CCDC83Q8IWF9 413 aa16.61■□□□□ 0.25
CCDC88A-211ENST00000471947 CEBPZQ03701 1054 aaKnown RBP16.61■□□□□ 0.25
CCDC88A-211ENST00000471947 NCBP3Q53F19 620 aaKnown RBP16.61■□□□□ 0.25
CCDC88A-211ENST00000471947 EPHA10Q5JZY3 1008 aa16.61■□□□□ 0.25
CCDC88A-211ENST00000471947 FAM182BQ5T319 152 aa16.61■□□□□ 0.25
CCDC88A-211ENST00000471947 FAM89AQ96GI7 184 aa16.61■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms