RNA–Protein interactions for RNA: ENST00000470241.2

SMC1A-206, Transcript of structural maintenance of chromosomes 1A, humanhuman

TSL 3

Gene SMC1A, Length 838 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1A-206ENST00000470241 HMGB2P26583 209 aaKnown RBP13.68□□□□□ -0.22
SMC1A-206ENST00000470241 CRKLP46109 303 aaKnown RBP13.68□□□□□ -0.22
SMC1A-206ENST00000470241 EXOSC9Q06265 439 aaKnown RBP13.68□□□□□ -0.22
SMC1A-206ENST00000470241 RC3H1Q5TC82 1133 aaKnown RBP13.68□□□□□ -0.22
SMC1A-206ENST00000470241 INTS5Q6P9B9 1019 aaKnown RBP13.68□□□□□ -0.22
SMC1A-206ENST00000470241 C5P01031 1676 aa13.67□□□□□ -0.22
SMC1A-206ENST00000470241 A1BGP04217 495 aa13.67□□□□□ -0.22
SMC1A-206ENST00000470241 SLC15A2Q16348 729 aa13.67□□□□□ -0.22
SMC1A-206ENST00000470241 AMIGO3Q86WK7 504 aa13.67□□□□□ -0.22
SMC1A-206ENST00000470241 CCDC87Q9NVE4 849 aa13.67□□□□□ -0.22
SMC1A-206ENST00000470241 ZBTB1Q9Y2K1 713 aa13.67□□□□□ -0.22
SMC1A-206ENST00000470241 EIF2S2P20042 333 aaKnown RBP13.66□□□□□ -0.22
SMC1A-206ENST00000470241 TWISTNBQ3B726 338 aaPredicted RBP13.66□□□□□ -0.22
SMC1A-206ENST00000470241 NBPF14Q5TI25 921 aa13.66□□□□□ -0.22
SMC1A-206ENST00000470241 AK7Q96M32 723 aa13.66□□□□□ -0.22
SMC1A-206ENST00000470241 STK32BQ9NY57 414 aa13.66□□□□□ -0.22
SMC1A-206ENST00000470241 C4BP0C0L5 1744 aa13.66□□□□□ -0.22
SMC1A-206ENST00000470241 SOS1Q07889 1333 aaPredicted RBP13.65□□□□□ -0.22
SMC1A-206ENST00000470241 COL5A3P25940 1745 aaPredicted RBP13.65□□□□□ -0.22
SMC1A-206ENST00000470241 NBPF26B4DH59 902 aa13.65□□□□□ -0.22
SMC1A-206ENST00000470241 GNPATO15228 680 aa13.65□□□□□ -0.22
SMC1A-206ENST00000470241 VAMP4O75379 141 aa13.65□□□□□ -0.22
SMC1A-206ENST00000470241 NBPF10Q6P3W6 841 aaKnown RBP13.65□□□□□ -0.22
SMC1A-206ENST00000470241 SMIM5Q71RC9 77 aa13.65□□□□□ -0.22
SMC1A-206ENST00000470241 NBPF15Q8N660 670 aa13.65□□□□□ -0.22
SMC1A-206ENST00000470241 RPS6KA4O75676 772 aa13.64□□□□□ -0.23
SMC1A-206ENST00000470241 CANXP27824 592 aaKnown RBP13.64□□□□□ -0.23
SMC1A-206ENST00000470241 PIP4K2AP48426 406 aaPredicted RBP13.64□□□□□ -0.23
SMC1A-206ENST00000470241 HDGFL1Q5TGJ6 251 aa13.64□□□□□ -0.23
SMC1A-206ENST00000470241 NECTIN2Q92692 538 aa13.64□□□□□ -0.23
SMC1A-206ENST00000470241 TFCP2L1Q9NZI6 479 aa13.64□□□□□ -0.23
SMC1A-206ENST00000470241 TAF1LQ8IZX4 1826 aa13.64□□□□□ -0.23
SMC1A-206ENST00000470241 PDIA6Q15084 440 aa13.63□□□□□ -0.23
SMC1A-206ENST00000470241 RTCBQ9Y3I0 505 aaKnown RBP13.63□□□□□ -0.23
SMC1A-206ENST00000470241 ERBB4Q15303 1308 aa13.63□□□□□ -0.23
SMC1A-206ENST00000470241 PNPLA7Q6ZV29 1317 aa13.63□□□□□ -0.23
SMC1A-206ENST00000470241 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.62□□□□□ -0.23
SMC1A-206ENST00000470241 IL6STP40189 918 aaPredicted RBP13.62□□□□□ -0.23
SMC1A-206ENST00000470241 EIF5P55010 431 aaKnown RBP13.62□□□□□ -0.23
SMC1A-206ENST00000470241 R3HDM1Q15032 1099 aaKnown RBP13.62□□□□□ -0.23
SMC1A-206ENST00000470241 PROSER3Q2NL68 480 aa13.62□□□□□ -0.23
SMC1A-206ENST00000470241 LRP10Q7Z4F1 713 aa13.62□□□□□ -0.23
SMC1A-206ENST00000470241 CHPF2Q9P2E5 772 aa13.62□□□□□ -0.23
SMC1A-206ENST00000470241 LAMB4A4D0S4 1761 aa13.61□□□□□ -0.23
SMC1A-206ENST00000470241 PHF14O94880 888 aa13.61□□□□□ -0.23
SMC1A-206ENST00000470241 ANXA1P04083 346 aa13.61□□□□□ -0.23
SMC1A-206ENST00000470241 SSFA2P28290 1259 aa13.61□□□□□ -0.23
SMC1A-206ENST00000470241 COL23A1Q86Y22 540 aaPredicted RBP13.61□□□□□ -0.23
SMC1A-206ENST00000470241 DDX21Q9NR30 783 aaKnown RBP eCLIP13.61□□□□□ -0.23
SMC1A-206ENST00000470241 MYH14Q7Z406 1995 aaKnown RBP13.6□□□□□ -0.23
SMC1A-206ENST00000470241 PSDA5PKW4 1024 aaPredicted RBP13.6□□□□□ -0.23
SMC1A-206ENST00000470241 TCERG1O14776 1098 aaKnown RBP13.6□□□□□ -0.23
SMC1A-206ENST00000470241 MYL6BP14649 208 aa13.6□□□□□ -0.23
SMC1A-206ENST00000470241 ADRA2BP18089 450 aa13.6□□□□□ -0.23
SMC1A-206ENST00000470241 TRAPPC3LQ5T215 181 aa13.6□□□□□ -0.23
SMC1A-206ENST00000470241 CCDC30Q5VVM6 783 aa13.6□□□□□ -0.23
SMC1A-206ENST00000470241 ARHGEF1Q92888 912 aaKnown RBP13.6□□□□□ -0.23
SMC1A-206ENST00000470241 PDGFDQ9GZP0 370 aaPredicted RBP13.6□□□□□ -0.23
SMC1A-206ENST00000470241 COL15A1P39059 1388 aa13.59□□□□□ -0.23
SMC1A-206ENST00000470241 CT47B1P0C2W7 299 aaPredicted RBP13.59□□□□□ -0.23
SMC1A-206ENST00000470241 FLAD1Q8NFF5 587 aa13.59□□□□□ -0.23
SMC1A-206ENST00000470241 CHMP4AQ9BY43 222 aa13.59□□□□□ -0.23
SMC1A-206ENST00000470241 DBF4Q9UBU7 674 aaPredicted RBP13.59□□□□□ -0.23
SMC1A-206ENST00000470241 ZNF330Q9Y3S2 320 aaPredicted RBP13.59□□□□□ -0.23
SMC1A-206ENST00000470241 UBR3Q6ZT12 1888 aa13.57□□□□□ -0.24
SMC1A-206ENST00000470241 A0A087WZG4 1122 aa13.57□□□□□ -0.24
SMC1A-206ENST00000470241 RFC4P35249 363 aa13.57□□□□□ -0.24
SMC1A-206ENST00000470241 TTLL7Q6ZT98 887 aa13.57□□□□□ -0.24
SMC1A-206ENST00000470241 ZNF428Q96B54 188 aa13.57□□□□□ -0.24
SMC1A-206ENST00000470241 HYPKQ9NX55 129 aa13.57□□□□□ -0.24
SMC1A-206ENST00000470241 SRP68Q9UHB9 627 aaKnown RBP13.57□□□□□ -0.24
SMC1A-206ENST00000470241 TUBGCP6Q96RT7 1819 aa13.56□□□□□ -0.24
SMC1A-206ENST00000470241 MSH5O43196 834 aa13.56□□□□□ -0.24
SMC1A-206ENST00000470241 SLC4A2P04920 1241 aa13.56□□□□□ -0.24
SMC1A-206ENST00000470241 COPS6Q7L5N1 327 aa13.56□□□□□ -0.24
SMC1A-206ENST00000470241 G2E3Q7L622 706 aa13.56□□□□□ -0.24
SMC1A-206ENST00000470241 DZIP3Q86Y13 1208 aaKnown RBP13.56□□□□□ -0.24
SMC1A-206ENST00000470241 XAGE3Q8WTP9 111 aa13.56□□□□□ -0.24
SMC1A-206ENST00000470241 SSH1Q8WYL5 1049 aa13.56□□□□□ -0.24
SMC1A-206ENST00000470241 STK31Q9BXU1 1019 aa13.56□□□□□ -0.24
SMC1A-206ENST00000470241 PHAXQ9H814 394 aaKnown RBP13.56□□□□□ -0.24
SMC1A-206ENST00000470241 NARFQ9UHQ1 456 aa13.56□□□□□ -0.24
SMC1A-206ENST00000470241 TBC1D2BQ9UPU7 963 aa13.56□□□□□ -0.24
SMC1A-206ENST00000470241 USP42Q9H9J4 1324 aaKnown RBP13.56□□□□□ -0.24
SMC1A-206ENST00000470241 CAMTA2O94983 1202 aa13.55□□□□□ -0.24
SMC1A-206ENST00000470241 NPM2Q86SE8 214 aaKnown RBP13.55□□□□□ -0.24
SMC1A-206ENST00000470241 MRPL50Q8N5N7 158 aaKnown RBP13.55□□□□□ -0.24
SMC1A-206ENST00000470241 BCL2L12Q9HB09 334 aa13.55□□□□□ -0.24
SMC1A-206ENST00000470241 QSER1Q2KHR3 1735 aa13.55□□□□□ -0.24
SMC1A-206ENST00000470241 RARSP54136 660 aaKnown RBP13.54□□□□□ -0.24
SMC1A-206ENST00000470241 AIMP1Q12904 312 aaKnown RBP13.54□□□□□ -0.24
SMC1A-206ENST00000470241 ALDH1L2Q3SY69 923 aa13.54□□□□□ -0.24
SMC1A-206ENST00000470241 USPL1Q5W0Q7 1092 aa13.54□□□□□ -0.24
SMC1A-206ENST00000470241 ARXQ96QS3 562 aa13.54□□□□□ -0.24
SMC1A-206ENST00000470241 BCL2L13Q9BXK5 485 aa13.54□□□□□ -0.24
SMC1A-206ENST00000470241 CASZ1Q86V15 1759 aa13.53□□□□□ -0.24
SMC1A-206ENST00000470241 ZPR1O75312 459 aa13.53□□□□□ -0.24
SMC1A-206ENST00000470241 GYS1P13807 737 aa13.53□□□□□ -0.24
SMC1A-206ENST00000470241 FKBP8Q14318 412 aa13.53□□□□□ -0.24
SMC1A-206ENST00000470241 KIF6Q6ZMV9 814 aa13.53□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms